Profile Details

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Hire Dr. Jan R.

United Kingdom

USD 100 /hr

Hi I'm Jan and my passion is to use bioinformatic approaches to address new questions in biology.

Profile Summary

I am proficient in fields such as biology, chemistry, biochemistry, biomedcine. My primary coding languages include R, python and BASH, with occasional use of Java or web-dev like html/css. My research projects include: - research and pipeline development for single guide RNA score on-target score optimisation - pipeline development and execution of autosomal sequence analysis for inferring population genetics - abundance analysis and statistical modeling of microbiome 16s RNA data to uncover biomarkers (article in accepted in nature communications) - machine learning pipeline (based on XGBoost) for analysis of CNV/SNV data in response to drugs (PARP inhibitors, Immune Checkpoint Blockade drugs, etc.) - cancer evolution pipeline that fascilitates analysis of results from the REVOLVER software (https://github.com/caravagnalab/revolver) - dNdS analysis for mesothelial research cohorts - survival analysis for mesothelioma cohorts

Subject Matter Expertise

• ★ Genetics
• ★ Data Analysis
• ★ Biomarker Discovery
• ☆ Computational Biology
• ☆ Evolutionary Biology
• ☆ Botany
• ☆ Plant Breeding & Genetics
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Biostatistics
• ☆ Biochemistry
• ☆ Immunoassay
• ☆ Biochemical Assays
• ☆ Structural Biology
• ☆ Apoptosis
• ☆ Oxidative Stress & Mitochondrial Function
• ☆ Antioxidants
• ☆ Enzyme Activity Assays
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Microarrays
• ☆ Molecular Evolution
• ☆ Chromatin
• ☆ Epigenetics
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Synthetic Genomics
• ☆ Protein Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ Recombinant DNA
• ☆ RNA Synthesis
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ DNA Damage & Repair
• ☆ ChIP-Seq
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Cell Signaling Pathways
• ☆ Gene Regulation
• ☆ Neuroscience
• ☆ Neurobiology
• ☆ Biotechnology & Bioengineering
• ☆ Recombinant Protein Expression
• ☆ Computer Simulation/Computational Modeling
• ☆ Algorithm Design
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Data Cleaning
• ☆ Data Architecture
• ☆ Neural Networks
• ☆ Artificial Intelligence
• ☆ Deep Learning
• ☆ Statistics
• ☆ Regression Analysis
• ☆ Multivariate Analysis
• ☆ Nonlinear Regression
• ☆ Bayesian Statistics
• ☆ Correlation Analysis
• ☆ Statistical Computing
• ☆ Medical Statistics
• ☆ Food Engineering
• ☆ Food Additives
• ☆ Nutrition Science
• ☆ Food Microbiology
• ☆ Food Sensory Analysis
• ☆ Food Preservation
• ☆ Food Chemistry
• ☆ Nutritional Analysis
• ☆ Synthetic Biology
• ☆ Biomolecular Engineering
• ☆ Genetic Engineering
• ☆ Gene Editing/CRISPR
• ☆ Blotting
• ☆ Immunohistochemistry
• ☆ Phylogenetics
• ☆ Population Genetics
• ☆ Cell Aging
• ☆ Recipe Formulation
• ☆ Viticulture & Enology/Wine Production

Services

• Writing
• Research
• Data & AI
• Product Development

Writing Technical Writing

Research Scientific and Technical Research

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Cleaning, Data Processing, Data Insights

Product Development Formulation, Recipe Development, Deformulation, Concept Development

Work Experience

Science & Research Officer

PharmaLinea d.o.o.

March 2018 - December 2020

Education

PhD Cancer Studies (LS: Genetics & Genome Biology)

Leicester Cancer Research Centre

January 2022 - Present

MSc Bioinformatics (LS Molecular Biology)

University of Leicester

January 2021 - January 2022

BSc Food Science & Nutrition (Department of Food Science & Nutrition)

University of Ljubljana

October 2011 - October 2015

Certifications

• MSc Bioinformatics

  University of Leicester

  January 2021 - January 2022

• BSc Food Science

  University Of Ljubljana

  October 2011 - October 2015