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Profile Details
Contact
★★★★★
☆☆☆☆☆
USD 50 /hr
Hire Dr. Krishnendu B.
India
USD 50 /hr

Research Specialist | Expert in Computational Biology, MD Simulation, Molecular Docking, DFT, QM, cryoEM Image analysis

Profile Summary
Subject Matter Expertise
Services
Writing Technical Writing
Research Gray Literature Search, Systematic Literature Review, Secondary Data Collection
Data & AI Statistical Analysis
Work Experience

Research Specialist

Central European Institute of Technology

January 2020 - Present

PhD Scholar

Central European Institute of Technology, Masaryk University, Brno, Czech Republic

September 2018 - Present

Research Associate

National Taiwan University, Taipei

September 2017 - May 2018

Project Assistant

Indian Institute of Science Education Research (IISER), Kolkata

July 2016 - December 2016

Education

PhD

Masaryk University, Brno, Czech Republic

September 2018 - Present

M.Sc. (Bioinformatics)

Central University of South Bihar

July 2014 - May 2016

Certifications
  • Certification details not provided.
Publications
JOURNAL ARTICLE
(2021). Binding and inhibitory effect of ravidasvir on 3CLpro of SARS-CoV-2: a molecular docking, molecular dynamics and MM/PBSA approach . Journal of biomolecular structure and dynamics.
Bera, Krishnendu, Subadini, Suchismita, Hritz, Jozef, Sahoo, Harekrushna (2021). Polyethylene glycol perturbs the unfolding of CRABP I: A correlation between experimental and theoretical approach . Colloids and Surfaces B: Biointerfaces.
Bera, Krishnendu, Subadini, Suchismita, Hritz, Jozef, Sahoo, Harekrushna (2021). Perturbing the unfolding of CRABP I using polyethylene glycol: An experimental and theoretical study . European Biophysics Journal.
Krishnendu Bera, V. S. Jeba Reeda, P. R. Babila, Dhurvas Chandrasekaran Dinesh, Jozef Hritz, T. Karthick (2021). An in silico molecular dynamics simulation study on the inhibitors of SARS-CoV-2 proteases (3CL(pro) and PLpro) to combat COVID-19 . Molecular Simulation.
bera, krishnendu, Millan, Sabera, Satish, Lakkoji, Sahoo, Harekrushna(2019). Binding and Inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of Lysozyme . New Journal of Chemistry.
Millan, S., Satish, L., Bera, K., Sahoo, H.(2019). Binding and inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of lysozyme . New Journal of Chemistry. 43. (9). p. 3956-3968.
Mahapatra MK, Bera K, Singh DV, Kumar R, Kumar M(2018). In silico modelling and molecular dynamics simulation studies of thiazolidine based PTP1B inhibitors . Journal of biomolecular structure & dynamics.
Mahapatra, M.K., Bera, K., Singh, D.V., Kumar, R., Kumar, M.(2018). In silico modelling and molecular dynamics simulation studies of thiazolidine based PTP1B inhibitors . Journal of Biomolecular Structure and Dynamics. 36. (5). p. 1195-1211.
Millan, S., Satish, L., Bera, K., Konar, M., Sahoo, H.(2018). Exploring the effect of 5-Fluorouracil on conformation, stability and activity of lysozyme by combined approach of spectroscopic and theoretical studies . Journal of Photochemistry and Photobiology B: Biology. 179. p. 23-31.
Bera, K., Rani, P., Kishor, G., Agarwal, S., Kumar, A., Singh, D.V.(2018). Structural elucidation of transmembrane domain zero (TMD0) of EcdL: A multidrug resistance-associated protein (MRP) family of ATP-binding cassette transporter protein revealed by atomistic simulation . Journal of Biomolecular Structure and Dynamics. 36. (11). p. 2938-2950.
Millan S, Satish L, Bera K, Susrisweta B, Singh DV, Sahoo H, The journal of physical chemistry. B, 2017, 2017 .
Sabera Millan and Lakkoji Satish and Krishnendu Bera and Monidipa Konar and Harekrushna Sahoo(2017). Exploring the effect of 5-Fluorouracil on conformation, stability and activity of lysozyme by combined approach of spectroscopic and theoretical studies . Journal of Photochemistry and Photobiology B: Biology. p. - .
Satish, L., Millan, S., Bera, K., Mohapatra, S., Sahoo, H.(2017). A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin . New Journal of Chemistry. 41. (19). p. 10712-10722.
Krishnendu Bera and Priyanka Rani and Gaurav Kishor and Shikha Agarwal and Antresh Kumar and Durg Vijay Singh(2017). Structural elucidation of transmembrane domain zero (TMD0) of EcdL: A multidrug resistance-associated protein (MRP) family of ATP-binding cassette transporter protein revealed by atomistic simulation . Journal of Biomolecular Structure and Dynamics. 0. (0). p. 1-13. Taylor & Francis
Millan, S., Satish, L., Bera, K., Susrisweta, B., Singh, D.V., Sahoo, H.(2017). A Spectroscopic and Molecular Simulation Approach toward the Binding Affinity between Lysozyme and Phenazinium Dyes: An Effect on Protein Conformation . Journal of Physical Chemistry B. 121. (7). p. 1475-1484.
Satish, Lakkoji and Millan, Sabera and Bera, Krishnendu and Mohapatra, Sujata and Sahoo, Harekrushna(2017). A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin . New J. Chem. p. -. The Royal Society of Chemistry