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Hire Dr. Krishnendu B.
India
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Research Specialist | Expert in Computational Biology, MD Simulation, Molecular Docking, DFT, QM, cryoEM Image analysis
Profile Summary
Subject Matter Expertise
Services
Work Experience
Research specialist
Masaryk University
April 2022 - Present 
Research Specialist
Central European Institute of Technology
January 2020 - Present
PhD Scholar
Central European Institute of Technology, Masaryk University, Brno, Czech Republic
September 2018 - Present
Research Associate
National Taiwan University, Taipei
September 2017 - May 2018
Project Assistant
Indian Institute of Science Education Research (IISER), Kolkata
July 2016 - December 2016
Education
PhD
Masaryk University, Brno, Czech Republic
September 2018 - Present
M.Sc. (Bioinformatics)
Central University of South Bihar
July 2014 - May 2016
Certifications
- Certification details not provided.
Publications
PREPRINT
Krishnendu Bera, Suchismita Subadini, Devi Prasanna Behera, Jozef Hritz, Harekrushna Sahoo(2023). Polyethylene Glycol as a Crowder: Modulating on Unfolding and Refolding Kinetics of CRABP I Protein . American Chemical Society ({ACS})
JOURNAL ARTICLE
Krishnendu Bera, Alessia Lasorsa, Idir Malki, Elian Dupré, François-Xavier Cantrelle, Hamida Merzougui, Davy Sinnaeve, Xavier Hanoulle, Jozef Hritz, Isabelle Landrieu(2023). Conformation and Affinity Modulations by Multiple Phosphorylation Occurring in the BIN1 SH3 Domain Binding Site of the Tau Protein Proline-Rich Region . Biochemistry. American Chemical Society ({ACS})
krishnendu bera(2022). Computational approach for building QSAR models for inhibition of HIF-1A . Journal of the Indian Chemical Society. p. 100687. Elsevier {BV}
Suchismita Subadini and Ram Sankar Panigrahy and Nishesh Kumar Gupta and Krishnendu Bera and Harekrushna Sahoo(2022). Impact of Chromate and Dichromate on Lysozyme Stability: A Spectroscopic and Molecular Docking Investigation . Luminescence. Wiley
(2021). Binding and inhibitory effect of ravidasvir on 3CLpro of SARS-CoV-2: a molecular docking, molecular dynamics and MM/PBSA approach . Journal of biomolecular structure and dynamics.
Bera, Krishnendu, Reeda, V. S. Jeba, Babila, P. R., Dinesh, Dhurvas Chandrasekaran, Hritz, Jozef, Karthick, T. (2021). An in silico molecular dynamics simulation study on the inhibitors of SARS-CoV-2 proteases (3CL(pro) and PLpro) to combat COVID-19 . Molecular Simulation.
Bera, Krishnendu, Subadini, Suchismita, Hritz, Jozef, Sahoo, Harekrushna (2021). Perturbing the unfolding of CRABP I using polyethylene glycol: An experimental and theoretical study . European Biophysics Journal.
Bera, Krishnendu, Subadini, Suchismita, Hritz, Jozef, Sahoo, Harekrushna (2021). Polyethylene glycol perturbs the unfolding of CRABP I: A correlation between experimental and theoretical approach . Colloids and Surfaces B: Biointerfaces.
bera, krishnendu, Millan, Sabera, Satish, Lakkoji, Sahoo, Harekrushna(2019). Binding and Inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of Lysozyme . New Journal of Chemistry.
Millan, S., Satish, L., Bera, K., Sahoo, H.(2019). Binding and inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of lysozyme . New Journal of Chemistry. 43. (9). p. 3956-3968.
Bera, Krishnendu, Millan, Sabera, Satish, Lakkoji, Sahoo, Harekrushna (2019). Binding and inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of lysozyme . New Journal of Chemistry.
Mahapatra MK, Bera K, Singh DV, Kumar R, Kumar M(2018). In silico modelling and molecular dynamics simulation studies of thiazolidine based PTP1B inhibitors . Journal of biomolecular structure & dynamics.
Mahapatra, M.K., Bera, K., Singh, D.V., Kumar, R., Kumar, M.(2018). In silico modelling and molecular dynamics simulation studies of thiazolidine based PTP1B inhibitors . Journal of Biomolecular Structure and Dynamics. 36. (5). p. 1195-1211.
Bera, Krishnendu, Mahapatra, Manoj Kumar, Singh, Durg Vijay, Kumar, Rajnish, Kumar, Manoj (2018). In silico modelling and molecular dynamics simulation studies of thiazolidine based PTP1B inhibitors . Journal of Biomolecular Structure and Dynamics.
Millan, S., Satish, L., Bera, K., Konar, M., Sahoo, H.(2018). Exploring the effect of 5-Fluorouracil on conformation, stability and activity of lysozyme by combined approach of spectroscopic and theoretical studies . Journal of Photochemistry and Photobiology B: Biology. 179. p. 23-31.
Bera, Krishnendu, Millan, Sabera, Satish, Lakkoji, Konar, Monidipa, Sahoo, Harekrushna (2018). Exploring the effect of 5-Fluorouracil on conformation, stability and activity of lysozyme by combined approach of spectroscopic and theoretical studies . Journal of Photochemistry and Photobiology B: Biology.
Rani, Priyanka, Kishor, Gaurav, Agarwal, Shikha, Kumar, Antresh, Singh, Durg Vijay, Bera, Krishnendu (2018). Structural elucidation of transmembrane domain zero (TMD0) of EcdL: A multidrug resistance-associated protein (MRP) family of ATP-binding cassette transporter protein revealed by atomistic simulation . Journal of Biomolecular Structure and Dynamics.
Bera, K., Rani, P., Kishor, G., Agarwal, S., Kumar, A., Singh, D.V.(2018). Structural elucidation of transmembrane domain zero (TMD0) of EcdL: A multidrug resistance-associated protein (MRP) family of ATP-binding cassette transporter protein revealed by atomistic simulation . Journal of Biomolecular Structure and Dynamics. 36. (11). p. 2938-2950.
Satish, L., Millan, S., Bera, K., Mohapatra, S., Sahoo, H.(2017). A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin . New Journal of Chemistry. 41. (19). p. 10712-10722.
Satish, Lakkoji, Bera, Millan Krishnendu, Mohapatra, Sujata, Sahoo, Harekrushna (2017). A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin . New Journal of Chemistry.
Sabera Millan and Lakkoji Satish and Krishnendu Bera and Monidipa Konar and Harekrushna Sahoo(2017). Exploring the effect of 5-Fluorouracil on conformation, stability and activity of lysozyme by combined approach of spectroscopic and theoretical studies . Journal of Photochemistry and Photobiology B: Biology. p. - .
Satish, Lakkoji and Millan, Sabera and Bera, Krishnendu and Mohapatra, Sujata and Sahoo, Harekrushna(2017). A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin . New J. Chem. p. -. The Royal Society of Chemistry
Bera, Krishnendu, Millan, Sabera, Satish, Lakkoji, Susrisweta, B., Singh, Durg Vijay, Sahoo, Harekrushna (2017). A Spectroscopic and Molecular Simulation Approach toward the Binding Affinity between Lysozyme and Phenazinium Dyes: An Effect on Protein Conformation . The Journal of Physical Chemistry B.
Krishnendu Bera and Priyanka Rani and Gaurav Kishor and Shikha Agarwal and Antresh Kumar and Durg Vijay Singh(2017). Structural elucidation of transmembrane domain zero (TMD0) of EcdL: A multidrug resistance-associated protein (MRP) family of ATP-binding cassette transporter protein revealed by atomistic simulation . Journal of Biomolecular Structure and Dynamics. 0. (0). p. 1-13. Taylor & Francis
Millan, S., Satish, L., Bera, K., Susrisweta, B., Singh, D.V., Sahoo, H.(2017). A Spectroscopic and Molecular Simulation Approach toward the Binding Affinity between Lysozyme and Phenazinium Dyes: An Effect on Protein Conformation . Journal of Physical Chemistry B. 121. (7). p. 1475-1484.
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