Profile Details

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Hire Michał K.

Poland

USD 80 /hr

Chief Bioinformatics Officer at Onebiome. Owner and Lead Bioinformatician at SciOps - https://sciops.pl

Profile Summary

Chief Bioinformatics Officer at Onebiome, Founder of SciOps, Bioinformatician with 6+ years of work experience. Lead backend developer of https://smaft.eu

Subject Matter Expertise

• ★ Computational Biology
• ★ Data Analysis
• ★ Bioinformatics
• ☆ Evolutionary Biology
• ☆ Botany
• ☆ Plant Pathology
• ☆ Cannabis/CBD
• ☆ Medicinal Plants
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Virology
• ☆ Molecular Virology
• ☆ Industrial Microbiology
• ☆ Mathematical Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Metabolomics
• ☆ Genomics
• ☆ Epigenetics
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Mutagenesis
• ☆ Exome Sequencing
• ☆ RNA Sequencing
• ☆ Biotechnology & Bioengineering
• ☆ Microbial Biotechnology
• ☆ Microscopy
• ☆ Light Microscopy
• ☆ Fluorescence Microscopy
• ☆ Plant Biotechnology
• ☆ Image Processing
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Data Collection
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Data Mining
• ☆ Data Cleaning
• ☆ Natural Language Processing
• ☆ Data Architecture
• ☆ Neural Networks
• ☆ Pattern Recognition
• ☆ Deep Learning
• ☆ Computer Vision
• ☆ Statistics
• ☆ Statistical Theory
• ☆ Applied Statistics
• ☆ Comparative Analysis
• ☆ Meta-Analysis
• ☆ Multivariate Analysis
• ☆ Nonlinear Regression
• ☆ Bayesian Statistics
• ☆ Statistical Computing
• ☆ Survey Design
• ☆ Study Design
• ☆ Spatial Statistics
• ☆ Medical Statistics
• ☆ Health Data Analysis
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Structural Bioinformatics
• ☆ Environmental Science
• ☆ Environmental Biotechnology
• ☆ Environmental Statistics
• ☆ Ecology
• ☆ Conservation Genetics
• ☆ Biodiversity
• ☆ Microbial Ecology
• ☆ Food Microbiology
• ☆ Pathogenesis
• ☆ Clinical Microbiology
• ☆ Biomarker Discovery
• ☆ Knowledge Management
• ☆ Taxonomy/Classification
• ☆ Biological Taxonomy/Classification
• ☆ Data Archaeology
• ☆ Phylogenetics
• ☆ Population Genetics
• ☆ Forensic Genetics
• ☆ Library & Information Science
• ☆ Information & Knowledge Management
• ☆ Data Storage
• ☆ Environmental Ethics
• ☆ Logic
• ☆ Epistemology
• ☆ English as a Second Language (ESL)
• ☆ Python
• ☆ SQL
• ☆ Excel
• ☆ Tensorflow
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Oracle
• ☆ Microbiology Testing
• ☆ Biomarker Analysis
• ☆ Infectious Disease
• ☆ Viral Diseases
• ☆ COVID-19
• ☆ Antibiotic Resistance Research
• ☆ Software Development
• ☆ DevOps
• ☆ Hypothesis
• ☆ Peer Review
• ☆ Research Methodology
• ☆ Survey Design & Methodology
• ☆ Qualitative User Research
• ☆ Meta-Research
• ☆ Literature Search
• ☆ Gray Literature Search
• ☆ Instructional Webinars
• ☆ Skills Training
• ☆ Journal Selection
• ☆ Manuscript & Journal Article Writing
• ☆ Instructional Materials
• ☆ Case Studies
• ☆ Science Communication
• ☆ Literature Review
• ☆ Data-Driven Decision Making

Services

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, Copywriting, Newswriting, General Proofreading & Editing, Translation

Research User Research, Meta-Research, Technology Scouting, Fact Checking, Gray Literature Search, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Digital Strategy Consulting, Operations Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Concept Development

Work Experience

Owner - Lead Bioinformatician

Michał Kowalski - SciOps

October 2023 - Present

Chief Bioinformatics Officer

Onebiome Sp. Z o. o.

May 2023 - Present

Scientific research assistant

Jagiellonian University

April 2020 - Present

Doctoral researcher/Research Assistant

Doctoral School of Exact and Natural Sciences at Jagiellonian University

September 2019 - Present

System Administrator

Jagiellonian University

November 2019 - June 2023

Research Assistant

Jagiellonian University

April 2020 - April 2023

Lectuter

Jagiellonian University

January 2020 - December 2022

Lead Data Scientist

Jagiellonian University

March 2021 - May 2022

Biostatistician consultant

Instytut Edukacji I. E. Sp. Z o. o.

January 2019 - November 2019

laboratory intern

BioPhage Pharma S. A.

September 2016 - June 2017

Education

Doctor of Philosophy (PhD), Computational Biology

Doctoral School of Exact and Natural Sciences at Jagiellonian University

September 2019 - Present

Master of Science (MSc) Molecular Biotechnology

Jagiellonian University Cracow - Poland

September 2017 - June 2019

Bachelor of Science (BSc), Biology

Jagiellonian University Cracow - Poland

September 2014 - June 2017

Certifications

• DeepLearning.AI TensorFlow Developer Specialization

  coursera

  https://www.coursera.org/account/accomplishments/specialization/certificate/4X24FXFRL99F

  August 2019 - Present

• Deep Learning Specialization by DeepLearning.AI

  coursera

  https://www.coursera.org/account/accomplishments/specialization/certificate/Q3TQE7ZCFJAW

  December 2018 - Present

• Machine Learning by Stanford University

  coursera

  https://www.coursera.org/account/accomplishments/certificate/RCFJH64BATAX

  June 2018 - Present

Publications

JOURNAL ARTICLE

Jędrzejczyk, R.J., Gustab, M., Ważny, R., Domka, A., Jodłowski, P.J., Sitarz, M., Bezkosty, P., Kowalski, M., Pawcenis, D., Jarosz, K., et al.(2023). Iron inactivation by Sporobolomyces ruberrimus and its potential role in plant metal stress protection. An in vitro study . Science of the Total Environment. 870.

Domka, A., Jędrzejczyk, R., Ważny, R., Gustab, M., Kowalski, M., Nosek, M., Bizan, J., Puschenreiter, M., Vaculίk, M., Kováč, J., et al.(2023). Endophytic yeast protect plants against metal toxicity by inhibiting plant metal uptake through an ethylene-dependent mechanism . Plant Cell and Environment. 46. (1). p. 268-287.

Natalia Mazur-Panasiuk and Lukasz Rabalski and Tomasz Gromowski and Grzegorz Nowicki and Michal Kowalski and Witold Wydmanski and Piotr Szulc and Maciej Kosinski and Karolina Gackowska and Natalia Drweska-Matelska and Jakub Grabowski and Anna Piotrowska-Mietelska and Boguslaw Szewczyk and Krystyna Bienkowska-Szewczyk and Jakub Swadzba and Pawel Labaj and Maciej Grzybek and Krzysztof Pyrc(2021). Expansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassing ORF7a, ORF7b and ORF8, Poland, July to August 2021 . Eurosurveillance. 26. (39). European Centre for Disease Control and Prevention ({ECDC})

Mazur-Panasiuk, N., Rabalski, L., Gromowski, T., Nowicki, G., Kowalski, M., Wydmanski, W., Szulc, P., Kosinski, M., Gackowska, K., Drweska-Matelska, N., et al.(2021). Expansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassing ORF7a, ORF7b and ORF8, Poland, July to August 2021 . Eurosurveillance. 26. (39).

Agata Jagie{\l}{\l}o and and Anna Wo{\'{z}}niak and B{\l}a{\.{z}}ej Szczerba and Rafa{\l} P{\l}oski and Ma{\l}gorzata Rydzanicz and Agnieszka Pollak and Alina Frolova and Micha{\l} Kowalski and Pawe{\l} {\L}abaj and Andrzej Ossowski and Wojciech Branicki and Kinga Herda and Kamila Marsza{\l}ek and Renata Zbie{\'{c}}-Piekarska and and and and and and and and and and and and and and and(2021). Harnessing the potential of the environmental microbiome in forensic science . Issues of Forensic Science. (312). p. 61--67. Centralne Laboratorium Kryminalistyczne Policji

Michał Kowalski, Katarzyna Pancer, Ron A. M. Fouchier, Aleksandra Milewska, Katarzyna Owczarek, Agnieszka Dabrowska, Paweł P. Łabaj, Wojciech Branicki, Marek Sanak, Krzysztof Pyrc(2020). The SARS-CoV-2 ORF10 is not essential in vitro or in vivo in humans . PLOS Pathogens. 16. (12). p. e1008959. Public Library of Science ({PLoS})

Pancer, K., Milewska, A., Owczarek, K., Dabrowska, A., Kowalski, M., Labaj, P., Branicki, W., Sanak, M., Pyrc, K.(2020). The SARS-CoV-2 ORF10 is not essential in vitro or in vivo in humans . PLoS Pathogens. 16. (12).

PREPRINT

Renan Valieris and Micha{\l} B. Kowalski and Alina Frolova and Witold Wydma{\'{n}}ski and Johnathan Foox and Giovana T. Torrezan and Ewelina Po{\'{s}}piech and Wojciech Branicki and Kasthuri Venkateswaran and Bharath Prithiviraj and Ramasamy Dhamodharan and Klas I. Udekwu and Diana N. Nunes and Dirce M. Carraro and Christopher Mason and Pawe{\l} P. {\L}abaj and Israel Tojal da Silva and Emmanuel Dias-Neto(2020). SARS-CoV-2 genome diversity at the binding sites of oligonucleotides used for COVID-19 diagnosis . medRxiv. Cold Spring Harbor Laboratory

OTHER

Valieris, R., Kowalski, M.B., Frolova, A., Wydmański, W., Foox, J., Torrezan, G.T., Pośpiech, E., Branicki, W., Venkateswaran, K., Prithiviraj, B., et al.(2020). SARS-CoV-2 genome diversity at the binding sites of oligonucleotides used for COVID-19 diagnosis . medRxiv.