Profile Details

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Hire Dr. Fabio G.

Netherlands

USD 110 /hr

AI solutions for life science and manufacturing | analytics R&D for industry & academia

Profile Summary

Coming from an entrepreneurial family, a mathematician turned to data science, quantitative research and bioinformatics. A versatile analytical mind with strong attention to details, and more than 15 years of experience in communicating with domain experts and users. An industrial researcher and consultant with international academic experience. Always happy to acquire new quantitative skills, especially machine learning and statistical methods, and capable of doing it autonomously. Industrial data science experience: data science, machine learning, causal discovery, design and implement analytical method validation plans for predictive software, data analysis, deep learning, QC design, dashboard & reporting systems, statistical software development under GxP. Academic experience: applied algorithm development, data analysis, feature design, statistical modeling, data processing pipeline development, applied control theory, PDEs/ODEs modeling, design machine learning approaches. Bioinformatics&biotech: bacterial and human NGS data processing and analysis, metagenomics, ELISPOT, precision medicine for oncology, antibiotic resistance, mass-spectrometry data. Also on BBC News: https://www.bbc.com/news/health-xxxxxxxx Podcast guest: https://www.youtube.com/watch?v=Ng1y5lLP0zQ Services provided: - Consulting services for companies and individuals that are at the start of their data-driven journey: provide directions, improve data literacy, analyze data for decision making - Develop AI solutions for companies in life science (biotech, diagnostics, biomedical) and manufacturing - AI technical writing and software documentation: as a former academic in quantitative methods for biomedical research, I have years of experience in writing explanations of algorithms and analytical methods that are accessible to experts of other domains - Data science services for academics

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Biostatistics
• ☆ Mathematical Biology
• ☆ Molecular Biology
• ☆ Omics
• ☆ Genomics
• ☆ Gene Expression Analysis
• ☆ Manufacturing
• ☆ Data Analysis
• ☆ Computer Simulation/Computational Modeling
• ☆ Algorithm Design
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Machine Learning
• ☆ Data Mining
• ☆ Data Cleaning
• ☆ Artificial Intelligence
• ☆ Statistics
• ☆ Applied Statistics
• ☆ Health Data Analysis
• ☆ Bioinformatics
• ☆ Systems Biology
• ☆ Applied Mathematics
• ☆ Mathematical Models
• ☆ Mathematical Optimization
• ☆ Differential Equations
• ☆ Computational Mathematics
• ☆ Pure Mathematics
• ☆ Calculus
• ☆ Mathematical Analysis
• ☆ Python
• ☆ Matlab
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Markup Languages
• ☆ Hypothesis
• ☆ Peer Review

Services

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, General Proofreading & Editing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Prototyping

Work Experience

Data Scientist

In Ovo BV

April 2022 - February 2023

Data Scientist

In Ovo

April 2022 - February 2023

Senior Data Scientist

Machine2Learn BV

April 2018 - March 2022

Senior Data Scientist

Machine2Learn

April 2018 - March 2022

Bioinformatic Data Scientist

BioNTech AG

October 2016 - March 2018

Bioinformatic Data Scientist

BioNTech (Germany)

October 2016 - March 2018

Bioinformatics/Biostatistics Scientist

Molecular Health GmbH

August 2015 - September 2016

Biostatistics/Bioinformatics Scientist

Molecular Health GmbH

August 2015 - August 2016

Research Fellow

University of Exeter

October 2012 - September 2014

Research Fellow

University of Exeter

October 2012 - September 2014

Education

Data Science and Bioinformatics

Radboud University Nijmegen

October 2008 - September 2012

PhD (ICIS - Intelligent Systems - Machine Learning Group)

Radboud Universiteit Nijmegen

October 2008 - September 2012

Mathematics

Università di Pisa

November 1998 - November 2007

MSc in Mathematics (Department of Mathematics)

Università degli Studi di Pisa

October 1998 - November 2007

Certifications

• Neural Networks and Deep Learning

  coursera

  https://coursera.org/share/bd1aeeea58750fb2bad633900523564c

  July 2018 - Present

Publications

JOURNAL ARTICLE

Fabio Gori, Given Names Deactivated Family Name Deactivated, Mark Hewlett, Sarah Duxbury, Ivana Gudelj, Robert Beardmore(2017). The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes . Nature Ecology & Evolution. 1. (3). Springer Science and Business Media {LLC}

R. E. Beardmore, R. Pena-Miller, F. Gori, J. Iredell(2017). Antibiotic Cycling and Antibiotic Mixing: which one best mitigates antibiotic resistance? . Molecular Biology and Evolution. p. msw292. Oxford University Press ({OUP})

Gori, Fabio, Mavroeidis, Dimitrios, Jetten, Mike S. M., Marchiori, Elena(2017). The importance of Chargaff's second parity rule for genomic signatures in metagenomics . bioRxiv. Cold Spring Harbor Labs Journals

Fabio Gori, Ayari Fuentes-Hernandez, Jessica Plucain, Rafael Pena-Miller, Carlos Reding, Gunther Jansen, Hinrich Schulenburg, Ivana Gudelj, Robert Beardmore(2015). Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages . PLOS Biology. 13. (4). p. e1002104. Public Library of Science ({PLoS})

Gori, F., Tringe, S. G., Folino, G., van Hijum, S. A. F. T., Op den Camp, H. J. M., Jetten, M. S. M., Marchiori, E.(2013). Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes . BMC Genomics.

Gori, F., Folino, G., Jetten, M. S. M., Marchiori, E.(2011). MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks . Bioinformatics. 27. (2). p. 196-203.

Gori, F., Tringe, S. G., Kartal, B., Marchiori, E., Jetten, M. S. M.(2011). The metagenomic basis of anammox metabolism in Candidatus ‘Brocadia fulgida’ . Biochemical Society Transactions. 39. p. 1799 -- 1804.

CONFERENCE PAPER

Gori, F., Mavroeidis, D., Jetten, M. S. M., Marchiori, E.(2011). Genomic signatures for metagenomic data analysis: exploiting the reverse complementarity of tetranucleotides . Proceedings of the 5th IEEE International Conference on Systems Biology (ISB). p. 149 -154.

Folino, G., Gori, F., Jetten, M. S. M., Marchiori, E.(2009). Clustering Metagenome Short Reads using Weighted Proteins . Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO). (5483). p. 152-163.

G. Folino, F. Gori, M. S. M. Jetten, E. Marchiori(2009). Evidence-based Clustering of Reads and Taxonomic Analysis of Metagenomic Data . Proceedings of the 4th IAPR International Conference in Pattern Recognition in Bioinformatics (PRIB). (5780). p. 102-112.