Profile Details

Create Project

★★★★★

☆☆☆☆☆

USD 20 /hr

★★★★★

☆☆☆☆☆

Hire Atta U.

Pakistan

USD 20 /hr

Advanced Bioinformatics Consultant | Python/R Workflow Developer

Profile Summary

I’m a Bioinformatics professional with a BSc in Bioinformatics and over a year of hands‑on research experience in both academia and applied settings. I specialize in designing, implementing, and optimizing end‑to‑end bioinformatics pipelines using Python and R to turn raw sequencing data into actionable biological insights. My core strengths include: Next‑Generation Sequencing (NGS): RNA‑seq differential expression, ChIP‑seq peak calling, whole‑genome/exome assembly & variant analysis Custom Workflow Development: Automated, reproducible pipelines using Snakemake, Nextflow, and Docker for scalable analyses Statistical Modeling & Data Visualization: Advanced analysis with Bioconductor, tidyverse, Matplotlib/ggplot2, interactive dashboards (Shiny, Dash) Data Integration & Annotation: Merging multi‑omics datasets, functional enrichment (GO/KEGG), pathway/network modeling Machine Learning & AI Integration: Developing and deploying automated pipelines powered by bespoke ML/AI models, as well as integrating established AI tools into research workflows Molecular Simulation Setup: Crafting CHARMM input files for protein–lipid system simulations, including membrane embedding and parameterization Reproducibility & Documentation: Version control (Git/GitHub), comprehensive Jupyter/RMarkdown reports, and rigorous QC protocols I partner with biotech startups, academic labs, and industry teams to streamline large‑scale data processing, accelerate hypothesis testing, and deliver clear, publication‑ready results. Whether you need a custom RNA‑seq pipeline, advanced AI‑driven analysis, or detailed simulation setups, let’s connect and transform your data challenges into scientific breakthroughs.

Subject Matter Expertise

• ☆ Chemoinformatics
• ☆ Computational Chemistry
• ☆ Computational Biology
• ☆ Evolutionary Biology
• ☆ Biostatistics
• ☆ Mathematical Biology
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ Protein Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Neuroscience
• ☆ Computational Neuroscience
• ☆ Data Analysis
• ☆ Algorithm Design
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Data Collection
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Data Mining
• ☆ Data Cleaning
• ☆ Neural Networks
• ☆ Artificial Intelligence
• ☆ Deep Learning
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Structural Bioinformatics
• ☆ Python
• ☆ SQL
• ☆ Excel
• ☆ R
• ☆ Scikit-learn
• ☆ Drug Discovery
• ☆ Drug Target Identification
• ☆ Drug Design
• ☆ Structure-Activity Relationship (SAR) Studies
• ☆ Drug Development
• ☆ Drug Formulation
• ☆ Small Molecule Drug Development
• ☆ Biologic & Biosimilar Development
• ☆ Pharmacogenomics
• ☆ Drug Efficacy Testing
• ☆ Bioavailability
• ☆ Vaccine Development
• ☆ Immunotherapy
• ☆ Gene Therapy
• ☆ Cancer Research
• ☆ Cancer Biology

Services

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Non-Medical Regulatory Writing, Technical Writing, Copywriting, Creative Writing, General Proofreading & Editing

Research Meta-Research, Fact Checking, Gap Analysis, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Healthcare Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Data Mining, Data Cleaning, Data Processing

Product Development Formulation, Recipe Development, Product Evaluation, Product Validation, Manufacturing, Quality Assurance & Control (QA/QC), Product Launch Support, Packaging Design, Prototyping, Reverse Engineering

Work Experience

Researcher, Research Associate

Protein Dynamics Lab, National Center For Bioinformatics, Islamabad

February 2024 - Present

Researcher

Quaid-i-Azam University

February 2024 - Present

Education

Master of Philosophy in Bioinformatics

National Center For Bioinformatics, Quaid-i-Azam University, Islamabad

February 2025 - Present

Certifications

• Certification details not provided.