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Profile Details
Profile Summary
Subject Matter Expertise
Services
Data & AI
Predictive Modeling,
Statistical Analysis,
Image Analysis,
Data Visualization,
Big Data Analytics,
Text Mining & Analytics,
Data Mining
Work Experience
Assistant Professor in Artificial Intelligence & Machine Learning for Biomedicine
University College Dublin Ireland
December 2020 - Present
Group leader
Systems Biology Ireland
October 2016 - Present
University College Dublin
2016 - Present 
Education
PhD
Institute of Biochemical Physics, RAS
September 2001 - September 2007
M.S. (Applied Mathematics and Physics)
Moscow Institute of Physics and Technology
September 1994 - August 2000
Moscow Institute of Physics and Technology
1994 - 2000
Certifications
- Certification details not provided.
Publications
JOURNAL ARTICLE
Vadim Zhernovkov(2022). Control of cell state transitions . Nature. Springer Science and Business Media {LLC}
(2020). Inhaled multi-walled carbon nanotubes differently modulate global gene and protein expression in rat lungs . Nanotoxicology.
(2020). Differential responses of murine alveolar macrophages to elongate mineral particles of asbestiform and non-asbestiform varieties: Cytotoxicity, cytokine secretion and transcriptional changes . Toxicology and applied pharmacology.
(2020). Toxicity of TiO2 Nanoparticles: Validation of Alternative Models . International journal of molecular sciences.
(2020). Adverse outcome pathways as a tool for the design of testing strategies to support the safety assessment of emerging advanced materials at the nanoscale . Particle and fibre toxicology.
(2020). Acute Phase Response as a Biological Mechanism-of-Action of (Nano)particle-Induced Cardiovascular Disease . Small.
Zhernovkov, Vadim and Santra, Tapesh and Cassidy, Hilary and Rukhlenko, Oleksii and Matallanas, David and Krstic, Aleksandar and Kolch, Walter and Lobaskin, Vladimir and Kholodenko, Boris N(2019). An Integrative Computational Approach for a Prioritization of Key Transcription Regulators Associated With Nanomaterial-Induced Toxicity . Toxicological Sciences. 171. (2). p. 303-314.
Tapesh Santra and Oleksii Rukhlenko and Vadim Zhernovkov and Boris N. Kholodenko(2018). Reconstructing static and dynamic models of signaling pathways using Modular Response Analysis . Current Opinion in Systems Biology. 9. p. 11 - 21.
(2010). The Study of Thyrotropin-Releasing Hormone Effect in a Wide Concentration Range on the Aquifer System by IR-Spectroscopy Method . WATER journal.
(2007). In vitro effects of thyroliberin on structural state of plasma membranes in mouse brain and liver . Bulletin of experimental biology and medicine.
(2003). The effect of ultra small doses of thyroliberin on the structural changes in endoplasmic reticulum membranes in vitro. Radiats. Biol. Radioecol.
OTHER
Vadim Zhernovkov, Eric Brownhill, Shivraj M. Yabaji, Oleksii S. Rukhlenko, Kerstin Seidel, Bidisha Bhattacharya, Sujoy Chatterjee, Hui A. Chen, Nicholas Crossland, William Bishai, et al.(2020). Maladaptive oxidative stress cascade drives type I interferon hyperactivity in TNF activated macrophages promoting necrosis in murine tuberculosis granulomas . Cold Spring Harbor Laboratory
Vadim Zhernovkov, Meera Nair, William P. Martin, Jessie A. Elliott, Naomi Fearon, Hans Eckhardt, Janet McCormack, Catherine Godson, Eoin Patrick. Brennan, Lars Fändriks, et al.(2020). Characterisation of the Renal Cortical Transcriptome Following Roux-en-Y Gastric Bypass Surgery in Experimental Diabetic Kidney Disease . Cold Spring Harbor Laboratory
BOOK CHAPTER
(2007). Cell Membrane Structure and Thyroliberin Physiological Activity . New Aspects of Biochemical Physics.
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