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Hire Dr. Muhammad S.

Pakistan

USD 20 /hr

i am working for more than 10 years in the field of experimental and computational analysis of cancer biomarkers

Profile Summary

Bioinformatics and Computational Biology, Homology Modeling, Virtual Screening, Cancer Bioinformatics, Protein-Protein Interaction, Structural Bioinformatics, Protein Modeling, Structure Prediction, Molecular Docking Studies, Cheminformatics, Structure-Based Drug Design and Discovery, in-silico vaccine design, tumor metabolism, cancer genetics

Subject Matter Expertise

• ★ Molecular Biology
• ★ Bioinformatics
• ★ Cancer Research

Services

• Writing
• Data & AI

Writing Technical Writing

Data & AI Statistical Analysis, Big Data Analytics

Work Experience

Lecturer, Senior Lecturer

University of Swat

November 2012 - Present

Lecturer

Center for Biotechnology and microbiolgy, university of swat

November 2012 - Present

Education

PhD

Xiamen University

September 2015 - June 2019

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Shahzad Ahmad Khan and Zafran Khan and Zahoor Alam and Haris Sana and Muhammad Ali and Nasib Zaman and Daniya Ualiveya and Muhammad Rizwan and Muhammad Suleman(2022). Hepatitis E virus sero-prevalence among pregnant women in Khyber Pakhtunkhwa Pakistan . Clinical Immunology Communications. 2. p. 79--82. Elsevier {BV}

Taimoor Khan and Muhammad Suleman and Syed Shujait Ali and Muhammad Farhan Sarwar and Imtiaz Ali and Liaqat Ali and Abbas Khan and Bakht Rokhan and Yanjing Wang and Ruili Zhao and Dong-Qing Wei(2022). Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction . Computers in Biology and Medicine. 145. p. 105462. Elsevier {BV}

Irfan Ahmad and Syed Shujait Ali and Bisma Zafar and Huma Farooque Hashmi and Ismail Shah and Shahzeb Khan and Muhammad Suleman and Mazhar Khan and Saif Ullah and Shahid Ali and Jafar Khan and Mohammad Ali and Abbas Khan and Dong-Qing Wei(2022). Development of multi-epitope subunit vaccine for protection against the norovirus’ infections based on computational vaccinology . Journal of Biomolecular Structure and Dynamics. 40. (7). p. 3098--3109. Informa {UK} Limited

Athar Shafiq and Farrukh Zubair and Amna Ambreen and Muhammad Suleman and Qudsia Yousafi and Zahid Rasul Niazi and Zeeshan Anwar and Abbas Khan and Anwar Mohammad and Dong-Qing Wei(2022). Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach . Computers in Biology and Medicine. p. 105574. Elsevier {BV}

Abbas Khan and Hira Waris and Memoona Rafique and Muhammad Suleman and Anwar Mohammad and Syed Shujait Ali and Taimoor Khan and Yasir Waheed and Chenguang Liao and Dong-Qing Wei(2022). The Omicron (B.1.1.529) variant of SARS-CoV-2 binds to the hACE2 receptor more strongly and escapes the antibody response: Insights from structural and simulation data . International Journal of Biological Macromolecules. 200. p. 438--448. Elsevier {BV}

Fazal Akbar and Muhammad Suleman and Muhammad Israr and Syed Shujait Ali and Nasib Zaman and Owais Khan and Jawad Ali and Waqar Ahmad and Murad Ali Rahat and Akhtar Rasool and Muzafar Shah and Zahid Hussain and Mohammad Ali(2022). Effect of temperature and humidity on coronavirus infection in Pakistan . Gene Reports. 26. p. 101441. Elsevier {BV}

Taimoor Khan and Muhammad Abdullah and Tayyba Fatima Toor and Fahad N. Almajhdi and Muhammad Suleman and Arshad Iqbal and Liaqat Ali and Abbas Khan and Yasir Waheed and Dong-Qing Wei(2022). Evaluation of the Whole Proteome of Achromobacter xylosoxidans to Identify Vaccine Targets for mRNA and Peptides-Based Vaccine Designing Against the Emerging Respiratory and Lung Cancer-Causing Bacteria . Frontiers in Medicine. 8. Frontiers Media {SA}

Safwan Ahmad Abdullah Murshed and Muhammad Rizwan and Fazal Akbar and Nasib Zaman and Muhammad Suleman and Syed Shujait Ali(2022). Analysis of the Aflatoxin M1 contamination in traditional and commercial cheeses consumed in Yemen . International Journal of Dairy Technology. 75. (1). p. 194--200. Wiley

Abbas Khan and Sarfaraz Hussain and Sajjad Ahmad and Muhammad Suleman and Imrana Bukhari and Taimoor Khan and Farooq Rashid and Abul Kalam Azad and Muhammad Waseem and Wajid Khan and Zahid Hussain and Asghar Khan and Syed Shujait Ali and Qiyao Qin and Dong-Qing Wei(2022). Computational modelling of potentially emerging SARS-CoV-2 spike protein RBDs mutations with higher binding affinity towards ACE2: A structural modelling study . Computers in Biology and Medicine. 141. p. 105163. Elsevier {BV}

Abdullah Shah and Saira Rehmat and Iqra Aslam and Muhmmad Suleman and Farah Batool and Abdul Aziz and Farooq Rashid and Midrarullah and Muhmmad Asif Nawaz and Syed Shujait Ali and Muhammad Junaid and Abbas Khan and Dong-Qing Wei(2022). Comparative mutational analysis of SARS-CoV-2 isolates from Pakistan and structural-functional implications using computational modelling and simulation approaches . Computers in Biology and Medicine. 141. p. 105170. Elsevier {BV}

Shahzeb Khan and Syed Shujait Ali and Iqra Zaheer and Shoaib Saleem and Ziaullah and Nasib Zaman and Arshad Iqbal and Muhammad Suleman and Abdul Wadood and Ashfaq Ur Rehman and Asghar Khan and Abbas Khan and Dong-Qing Wei(2022). Proteome-wide mapping and reverse vaccinology-based B and T cell multi-epitope subunit vaccine designing for immune response reinforcement against <i>Porphyromonas gingivalis</i> . Journal of Biomolecular Structure and Dynamics. 40. (2). p. 833--847. Informa {UK} Limited

Zainib Babar and Mazhar Khan and Mubeen Zahra and Munazza Anwar and Kashif Noor and Huma Farooque Hashmi and Muhammad Suleman and Muhammad Waseem and Abdullah Shah and Shahid Ali and Syed Shujait Ali(2022). Drug similarity and structure-based screening of medicinal compounds to target macrodomain-I from SARS-CoV-2 to rescue the host immune system: a molecular dynamics study . Journal of Biomolecular Structure and Dynamics. 40. (1). p. 523--537. Informa {UK} Limited

Amin Ullah Jan and Fazal Hadi and Allah Ditta and Muhammad Suleman and Midrar Ullah(2022). Zinc-induced anti-oxidative defense and osmotic adjustments to enhance drought stress tolerance in sunflower (Helianthus annuus L.) . Environmental and Experimental Botany. 193. p. 104682. Elsevier {BV}

Abbas Khan and AsfandYar Waheed Randhawa and Ali Raza Balouch and Naila Mukhtar and Abrar Mohammad Sayaf and Muhammad Suleman and Taimoor Khan and Shahid Ali and Syed Shujait Ali and Yanjing Wang and Anwar Mohammad and Dong-Qing Wei(2022). Blocking key mutated hotspot residues in the RBD of the omicron variant (B.1.1.529) with medicinal compounds to disrupt the RBD-hACE2 complex using molecular screening and simulation approaches . RSC Advances. 12. (12). p. 7318--7327. Royal Society of Chemistry ({RSC})

Farooq Rashid and Muhammad Suleman and Abdullah Shah and Emmanuel Enoch Dzakah and Shuyi Chen and Haiying Wang and Shixing Tang(2021). Structural Analysis on the Severe Acute Respiratory Syndrome Coronavirus 2 Non-structural Protein 13 Mutants Revealed Altered Bonding Network With TANK Binding Kinase 1 to Evade Host Immune System . Frontiers in Microbiology. 12. Frontiers Media {SA}

Abbas Khan and Anwar Mohammad and Inamul Haq and Mohammad Nasar and Waqar Ahmad and Qudsia Yousafi and Muhammad Suleman and Sajjad Ahmad and Aqel Albutti and Taimoor Khan and Sulaiman K. Marafie and Eman Alshawaf and Syed Shujait Ali and Jehad Abubaker and Dong-Qing Wei(2021). Structural-Dynamics and Binding Analysis of RBD from SARS-CoV-2 Variants of Concern (VOCs) and GRP78 Receptor Revealed Basis for Higher Infectivity . Microorganisms. 9. (11). p. 2331. {MDPI} {AG}

Muhammad Suleman, Abbas Khan, Anwar Mohammad, Inamul Haq, Mohammad Nasar, Waqar Ahmad, Qudsia Yousafi, Sajjad Ahmad, Aqel Albutti, Taimoor Khan, et al. (2021). Structural-Dynamics and Binding Analysis of RBD from SARS-CoV-2 Variants of Concern (VOCs) and GRP78 Receptor Revealed Basis for Higher Infectivity . Microorganisms.

Muhammad Suleman and Qudsia Yousafi and Javaid Ali and Syed Shujait Ali and Zahid Hussain and Shahid Ali and Muhammad Waseem and Arshad Iqbal and Sajjad Ahmad and Abbas Khan and Yanjing Wang and Dong-Qing Wei(2021). Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor . Computers in Biology and Medicine. 138. p. 104936. Elsevier {BV}

Abbas Khan and Taimoor Khan and Shughla Ali and Summiya Aftab and Yanjing Wang and Wang Qiankun and Mazhar Khan and Muhammad Suleman and Shahid Ali and Wang Heng and Syed Shujait Ali and Dong-Qing Wei and Anwar Mohammad(2021). SARS-CoV-2 new variants: Characteristic features and impact on the efficacy of different vaccines . Biomedicine &amp; Pharmacotherapy. 143. p. 112176. Elsevier {BV}

Muhammad Suleman and Muhammad Tahir ul Qamar and Kiran and Samreen Rasool and Aneela Rasool and Aqel Albutti and Noorah Alsowayeh and Ameen S. S. Alwashmi and Mohammad Abdullah Aljasir and Sajjad Ahmad and Zahid Hussain and Muhammad Rizwan and Syed Shujait Ali and Abbas Khan and Dong-Qing Wei(2021). Immunoinformatics and Immunogenetics-Based Design of Immunogenic Peptides Vaccine against the Emerging Tick-Borne Encephalitis Virus (TBEV) and Its Validation through In Silico Cloning and Immune Simulation . Vaccines. 9. (11). p. 1210. {MDPI} {AG}

Muhammad Suleman, Muhammad Tahir ul Qamar, Kiran, Samreen Rasool, Aneela Rasool, Aqel Albutti, Noorah Alsowayeh, Ameen S.S. Alwashmi, Mohammad A Aljasir, Sajjad Ahmad, et al. (2021). Immunoinformatics and Immunogenetics-Based Design of Immunogenic Peptides Vaccine against the Emerging Tick-Borne Encephalitis Virus (TBEV) and Its Validation through In Silico Cloning and Immune Simulation . Vaccines.

Abbas Khan and Tauqir Zia and Muhammad Suleman and Taimoor Khan and Syed Shujait Ali and Aamir Ali Abbasi and Anwar Mohammad and Dong-Qing Wei(2021). Higher infectivity of the SARS‐CoV‐2 new variants is associated with K417N/T, E484K, and N501Y mutants: An insight from structural data . Journal of Cellular Physiology. 236. (10). p. 7045--7057. Wiley

Abbas Khan and Syed Shujait Ali and Muhammad Tahir Khan and Shoaib Saleem and Arif Ali and Muhammad Suleman and Zainib Babar and Athar Shafiq and Mazhar Khan and Dong-Qing Wei(2021). Combined drug repurposing and virtual screening strategies with molecular dynamics simulation identified potent inhibitors for SARS-CoV-2 main protease (3CLpro) . Journal of Biomolecular Structure and Dynamics. 39. (13). p. 4659--4670. Informa {UK} Limited

Namra Ahmad and Syed Shujait Ali and Sajjad Ahmad and Zahid Hussain and Muhammad Qasim and Muhammad Suleman and Shahid Ali and N. Nizam-Uddin and Abbas Khan and Dong-Qing Wei(2021). Computational Modeling of Immune Response Triggering Immunogenic Peptide Vaccine Against the Human Papillomaviruses to Induce Immunity Against Cervical Cancer . Viral Immunology. 34. (7). p. 457--469. Mary Ann Liebert Inc

Abbas Khan and Shaheena Umbreen and Asma Hameed and Rida Fatima and Ujala Zahoor and Zainib Babar and Muhammad Waseem and Zahid Hussain and Muhammad Rizwan and Nasib Zaman and Shahid Ali and Muhammad Suleman and Abdullah Shah and Liaqat Ali and Syed Shujait Ali and Dong-Qing Wei(2021). In Silico Mutagenesis-Based Remodelling of SARS-CoV-1 Peptide (ATLQAIAS) to Inhibit SARS-CoV-2: Structural-Dynamics and Free Energy Calculations . Interdisciplinary Sciences: Computational Life Sciences. 13. (3). p. 521--534. Springer Science and Business Media {LLC}

Abdul Aziz and Muhammad Athar Abbas and Naila Siddique and Abdullah Shah and Abdul Rahim and Saba Rafique and Abbas Khan and Midrarullah and Sikandar Khan and Farooq Rashid and Yi Hui and Muhammad Suleman(2021). Development of multiplex PCR for rapid and simultaneous detection of E. coli (APEC), Salmonella, Mycoplasma gallisepticum and Mycoplasma Synoviae . Gene Reports. 24. p. 101216. Elsevier {BV}

Bowen Zheng and Muhammad Suleman and Zonara Zafar and Syed Shujait Ali and Syed Nouman Nasir and Namra and Zahid Hussain and Muhammad Waseem and Abbas Khan and Fakhrul Hassan and Yanjing Wang and Dongqing Wei(2021). Towards an Ensemble Vaccine against the Pegivirus Using Computational Modelling Approaches and Its Validation through In Silico Cloning and Immune Simulation . Vaccines. 9. (8). p. 818. {MDPI} {AG}

Farooq Rashid and Muhammad Suleman and Abdullah Shah and Emmanuel Enoch Dzakah and Haiying Wang and Shuyi Chen and Shixing Tang(2021). Mutations in SARS-CoV-2 ORF8 Altered the Bonding Network With Interferon Regulatory Factor 3 to Evade Host Immune System . Frontiers in Microbiology. 12. Frontiers Media {SA}

Muhammad Suleman and Muhammad Tahir ul Qamar and Shoaib Saleem and Sajjad Ahmad and Syed Shujait Ali and Haji Khan and Fazal Akbar and Wajid Khan and Adel Alblihy and Faris Alrumaihi and Muhammad Waseem and Khaled S. Allemailem(2021). Mutational Landscape of Pirin and Elucidation of the Impact of Most Detrimental Missense Variants That Accelerate the Breast Cancer Pathways: A Computational Modelling Study . Frontiers in Molecular Biosciences. 8. Frontiers Media {SA}

Abbas Khan and Shahzeb Khan and Shoaib Saleem and N. Nizam-Uddin and Anwar Mohammad and Taimoor Khan and Sajjad Ahmad and Muhammad Arshad and Syed Shujait Ali and Muhammad Suleman and Dong-Qing Wei(2021). Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation . Computers in Biology and Medicine. 133. p. 104420. Elsevier {BV}

Adnan Zeb and Syed Shujait Ali and Abul Kalam Azad and Muhammad Safdar and Zeeshan Anwar and Muhammad Suleman and N. Nizam-Uddin and Abbas Khan and Dong-Qing Wei(2021). Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against Campylobacter jejuni . Computers in Biology and Medicine. 133. p. 104412. Elsevier {BV}

Abbas Khan and Taimoor Khan and Syed Nouman Nasir and Syed Shujait Ali and Muhammad Suleman and Muhammad Rizwan and Muhammad Waseem and Shahid Ali and Xia Zhao and Dong-Qing Wei(2021). BC-TFdb: a database of transcription factor drivers in breast cancer . Database. 2021. Oxford University Press ({OUP})

Sharafat Ali and Shahid Ali and Syeda Okasha Javed and Shehla Shoukat and Sajjad Ahmad and Syed Shujait Ali and Zahid Hussain and Muhammad Waseem and Muhammad Rizwan and Muhammad Suleman and Abbas Khan and Dong-Qing Wei(2021). Proteome wide vaccine targets prioritization and designing of antigenic vaccine candidate to trigger the host immune response against the Mycoplasma genitalium infection . Microbial Pathogenesis. 152. p. 104771. Elsevier {BV}

Abdullah Shah and Farooq Rashid and Abdul Aziz and Amin Ullah Jan and Muhammad Suleman(2020). Genetic characterization of structural and open reading Fram-8 proteins of SARS-CoV-2 isolates from different countries . Gene Reports. 21. p. 100886. Elsevier {BV}

Shiza Malik and Samra Khalid and Haidar Ali and Maham Khan and Faryal Mehwish and Aneela Javed and Fazal Akbar and Rumeza Hanif and Muhammad Suleman(2020). In-silico modeling and analysis of the therapeutic potential of miRNA-7 on EGFR associated signaling network involved in breast cancer . Gene Reports. 21. p. 100938. Elsevier {BV}

Huanhuan Ma and Jia Zhang and Lin Zhou and Shixiong Wen and Hsiang-Yu Tang and Bin Jiang and Fengqiong Zhang and Muhammad Suleman and Dachao Sun and Ai Chen and Wentao Zhao and Furong Lin and Ming-Tong Tsau and Lu-Min Shih and Changchuan Xie and Xiaotong Li and Donghai Lin and Li-Man Hung and Mei-Ling Cheng and Qinxi Li(2020). c-Src Promotes Tumorigenesis and Tumor Progression by Activating PFKFB3 . Cell Reports. 30. (12). p. 4235--4249.e6. Elsevier {BV}

Muhammad Suleman and Ai Chen and Huanhuan Ma and Shixiong Wen and Wentao Zhao and Donghai Lin and Guode Wu and Qinxi Li(2019). PIR promotes tumorigenesis of breast cancer by upregulating cell cycle activator E2F1 . Cell Cycle. 18. (21). p. 2914--2927. Informa {UK} Limited

Bin Jiang and Wentao Zhao and Minggang Shi and Jia Zhang and Ai Chen and Huanhuan Ma and Muhammad Suleman and Furong Lin and Lin Zhou and Jinyang Wang and Yan Zhang and Mengjue Liu and Shixiong Wen and Cong Ouyang and Huihui Wang and Xiumin Huang and Huamin Zhou and Qinxi Li(2018). IDH1 Arg-132 mutant promotes tumor formation through down-regulating p53 . Journal of Biological Chemistry. 293. (25). p. 9747--9758. Elsevier {BV}

Bin Jiang and Jia Zhang and Jinmei Xia and Wentao Zhao and Yanan Wu and Minggang Shi and Lianzhong Luo and Huamin Zhou and Ai Chen and Huanhuan Ma and Qingwen Zhao and Muhammad Suleman and Furong Lin and Lin Zhou and Jinyang Wang and Yan Zhang and Ying He and Xiaotong Li and Li-Man Hung and Tak Wah Mak and Qinxi Li(2017). IDH1 Mutation Promotes Tumorigenesis by Inhibiting JNK Activation and Apoptosis Induced by Serum Starvation . Cell Reports. 19. (2). p. 389--400. Elsevier {BV}

(2017). c-Src phosphorylation and activation of hexokinase promotes tumorigenesis and metastasis . Nature Communications.

Abdul ghafoor and Muhammad N Riaz and Aamer B Zahur and Nasir Abbas and Muhammad Yousaf and Abdullah Shah and Rafaqat Ishaq and Muhammad Suleman(2015). <i> Κ‐ <scp>CN</scp> </i> gene polymorphism in Nili‐ravi buffalo, Achai and Sahiwal cattle of Pakistan . International Journal of Dairy Technology. 68. (1). p. 105--110. Wiley

RAFAQAT ISHAQ and MUHAMMAD SULEMAN and MUHAMMAD NAEEM RIAZ and MUHAMMAD YOUSAF and ABDULLAH SHAH and ABDUL GHAFOOR(2013). Prolactin gene polymorphism in Nili-Ravi buffaloes in relation to Sahiwal and Achai Cattle . International Journal of Dairy Technology. 66. (1). p. 20--24. Wiley