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Hire Dr. Damien H.

France

USD 50 /hr

Specialist in phylogenetic and genomics, including genome sequencing, assembly and analyses

Profile Summary

My main research interest is to understand how biodiversity we observe today has evolved. For example, is disjunct biogeography due to neutral (geological or climatic events) or to selective pressures (divergent selection)? What is the time-scale of diversification for a group of species, like a genus? Did climatic variation during the Cenozoic and quaternary glaciations influence species in a specific area more strongly than in other areas? Because these questions could be applied to both plants and animals, my groups of study are diverse, from fishes to trees species, and from parasites to endemic species. I use methods ranging from phylogenetics to population genetics, with several types of markers (AFLP, nuclear DNA, cpDNA, genetic data), combined with geological and other biological data to infer and date phylogeographic scenarios. Since my post-doctoral position at the French National Centre for Scientific Research (C.N.R.S.), I am more specifically interested in the analysis of NGS (Next-Generation Sequencing) data, as these provide very powerful tools to answer evolutionary questions,such as fine-scale speciation patterns or complex reticulate evolution. Analyzing the huge amount of data produced by NGS increases the need for bioinformatics, I developed skills in pipelining for analyses of mitogenomes, as well as nuclear SNP-related data.

Subject Matter Expertise

• ★ Next Generation Sequencing (NGS)
• ☆ Evolutionary Biology
• ☆ Genetics
• ☆ Genomics
• ☆ Molecular Evolution
• ☆ Genome Sequencing
• ☆ Data Analysis
• ☆ Data Visualization
• ☆ Meta-Analysis
• ☆ Bioinformatics
• ☆ Biogeography
• ☆ Biodiversity
• ☆ Research

Services

• Writing
• Research
• Data & AI

Writing Technical Writing

Research Systematic Literature Review, Secondary Data Collection

Data & AI Statistical Analysis, Data Visualization

Work Experience

Postodoctoral researcher

Commissariat à l’énergie atomique et aux énergies alternatives Site de Fontenay-aux-Roses

December 2019 - Present

Postdoctoral researcher

Guangxi University

April 2015 - Present

Postdoctoral researcher

CNRS

September 2013 - August 2014

Research and Teaching Assistant

Versailles-Saint-Quentin-en-Yvelines University

September 2010 - August 2011

Research and Teaching Assistant

Paris-Sud University

September 2009 - August 2010

PhD student

AgroParisTech - ENGREF

September 2006 - August 2009

Education

PhD

AgroParisTech - ENGREF

September 2006 - June 2010

PhD

Laval University

September 2006 - June 2010

Master

Nice-Sophia-Antipolis University

September 2004 - August 2006

Licence

Nice-Sophia-Antipolis University

September 2003 - August 2004

DEUG

New-Caledonia University

February 2002 - August 2003

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Angelo D. Armijos Carrion, Damien D. Hinsinger, Joeri S. Strijk (2020). ECuADOR—Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines . PeerJ.

Angelo Damian Armijos Carrion, Damien Daniel Hinsinger, Joeri Sergej Strijk(2020). Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae) . Mitochondrial {DNA} Part B. 5. (1). p. 379--381. Informa {UK} Limited

Tijana Cvetković, Damien Daniel Hinsinger, Joeri Sergej Strijk(2019). Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing . Scientific Reports. 9. (1). Springer Science and Business Media {LLC}

Joeri S Strijk, Damien D Hinsinger, Fengping Zhang, Kunfang Cao (2019). Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research . GigaScience.

Damien Daniel Hinsinger, Joeri Sergej Strijk (2019). Plastome of Quercus xanthoclada and comparison of genomic diversity amongst selected Quercus species using genome skimming . PhytoKeys.

(2019). The soursop genome and comparative genomics of basal angiosperms provide new insights on evolutionary incongruence . bioRxiv.

Tianhui Yu, Damien Daniel Hinsinger, Joeri Sergej Strijk, Alison Kim Shan Wee(2018). The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts . Mitochondrial {DNA} Part B. 3. (2). p. 500--502. Informa {UK} Limited

Jin-Yan Lei, Damien Daniel Hinsinger, Guo-Feng Jiang(2018). Characterization of the complete chloroplast genome of endangered Cycads Zamia fischeri Miq. ex Lem . Mitochondrial {DNA} Part B. 3. (2). p. 1059--1061. Informa {UK} Limited

Tijana Cvetković, Damien Daniel Hinsinger, Joeri Sergej Strijk(2017). The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae) . Mitochondrial {DNA} Part B. 2. (1). p. 52--53. Informa {UK} Limited

Damien Daniel Hinsinger, Joeri Sergej Strijk(2017). The chloroplast genome sequence of Michelia alba (Magnoliaceae), an ornamental tree species . Mitochondrial {DNA} Part B. 2. (1). p. 9--10. Informa {UK} Limited

Guo-Feng Jiang, Damien Daniel Hinsinger, Joeri Sergej Strijk(2016). Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads . Scientific Reports. 6. p. 31473. Springer Nature

Damien Daniel Hinsinger, Joeri Sergej Strijk(2016). Toward phylogenomics of Lauraceae: The complete chloroplast genome sequence of Litsea glutinosa (Lauraceae), an invasive tree species on Indian and Pacific Ocean islands . Plant Gene. Elsevier {BV}

Damien D. Hinsinger, Regis Debruyne, Maeva Thomas, Gaël P. J. Denys, Marion Mennesson, Jose Utage, Agnes Dettai(2015). Fishing for barcodes in the Torrent: from {COI} to complete mitogenomes on {NGS} platforms . {DNA} Barcodes. 3. (1). Walter de Gruyter {GmbH}

Damien Daniel Hinsinger, Joeri Sergej Strijk(2015). Complete chloroplast genome sequence of Castanopsis concinna (Fagaceae), a threatened species from Hong Kong and South-Eastern China . Mitochondrial {DNA}. p. 1--2. Informa Healthcare

Hinsinger Damien, Denys Gael, Davesne Donald, Debruyne Régis, Delmastro Giovanni, Keith Philippe, Persat Henri, Utge José, Dettai Agnes(2015). West Pike Story: a dated phylogeography of Esox spp. (Actinopterygii, Esocidae) . Front. Mar. Sci. 2. Frontiers Media {SA}

Schoelinck, Charlotte AND Hinsinger, Damien D. AND Dettaï, Agnès AND Cruaud, Corinne AND Justine, Jean-Lou(2014). A Phylogenetic Re-Analysis of Groupers with Applications for Ciguatera Fish Poisoning . PLoS ONE. 9. (8). p. e98198. Public Library of Science

Damien D. Hinsinger, Myriam Gaudeul, Arnaud Couloux, Jean Bousquet, Nathalie Frascaria-Lacoste(2014). The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation . Molecular Phylogenetics and Evolution. 77. p. 223--237. Elsevier {BV}

Damien D. Hinsinger and Myriam Gaudeul and Arnaud Couloux and Jean Bousquet and Nathalie Frascaria-Lacoste(2014). The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation . Molecular Phylogenetics and Evolution. 77. p. 223 - 237.

Hinsinger, Damien Daniel AND Basak, Jolly AND Gaudeul, Myriam AND Cruaud, Corinne AND Bertolino, Paola AND Frascaria-Lacoste, Nathalie AND Bousquet, Jean(2013). The Phylogeny and Biogeographic History of Ashes (<italic>Fraxinus</italic>, Oleaceae) Highlight the Roles of Migration and Vicariance in the Diversification of Temperate Trees . PLoS ONE. 8. (11). p. e80431. Public Library of Science

Arca M, Hinsinger DD, Cruaud C, Tillier A, Bousquet J, Frascaria-Lacoste N, <i>PloS one</i>, 2012, vol. 7, no. 3, pp. e34089 .

A.-C. Lautrédou and D.D. Hinsinger and C. Gallut and C.-H.C. Cheng and M. Berkani and C. Ozouf-Costaz and C. Cruaud and G. Lecointre and A. Dettai(2012). Phylogenetic footprints of an Antarctic radiation: The Trematominae (Notothenioidei, Teleostei) . Molecular Phylogenetics and Evolution. 65. (1). p. 87 - 101.

Hinsinger DD, Justine JL, <i>Systematic parasitology</i>, 2006, vol. 64, no. 2, pp. 69-90 .

Hinsinger DD, Justine JL, <i>Systematic parasitology</i>, 2006, vol. 63, no. 2, pp. 155-160 .

OTHER

Joeri S. Strijk, Damien D. Hinsinger, Feng-Ping Zhang, KunFang Cao(2019). Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research . Cold Spring Harbor Laboratory