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USD 70 /hr

★★★★★

☆☆☆☆☆

Hire Dr. Cleverson M.

Portugal

USD 70 /hr

Consultant Data Scientist & Molecular Biologist, Ph.D. in Genetics | ML/DL Expert with 12+ Years of Experience

Profile Summary

Bridging cutting-edge data science with molecular biology to unlock insights from complex biological systems. Interdisciplinary Approach: - Uniquely positioned to translate complex biological problems into data-driven solutions. - Expertise spans from wet-lab techniques to advanced analytics, ensuring end-to-end research support and actionable insights. Key Expertise: - Plant-Phenotyping Image Analysis: Developed custom scripts enhancing efficiency by 50%. - Protein Interaction Analysis: Designed and deployed Graph Neural Networks (GNNs) for protein function prediction. - Data Processing: Created robust Python modules for biological research data preparation. - Scientific Writing: Authored 15+ peer-reviewed publications in high-impact journals. - Reviewer: Reviewed manuscripts for indexed journals, including Planta, Cell Tissue and Organ Culture, Cells, Genes. Technical Proficiency: - Languages: Python, R, SQL - Frameworks: TensorFlow, PyTorch, PyTorch Geometric, Scikit-learn - Tools: Pandas, Matplotlib, NetworkX, Git - Platforms: Linux, macOS, Windows Industry & Academic Impact: - Managed public-private partnerships to assess fertilizer efficacy through field experiments - Contributed to uncovering novel mechanisms in plant circadian clock adjustments - Mentored undergraduate and graduate students in Molecular Biology and Bioinformatics techniques Let's collaborate to transform your biological data into groundbreaking discoveries and impactful solutions!

Subject Matter Expertise

• ★ Molecular Biology
• ★ Data Analysis
• ★ Deep Learning
• ☆ Computational Biology
• ☆ Botany
• ☆ Plant Pathology
• ☆ Plant Physiology
• ☆ Biostatistics
• ☆ Biochemistry
• ☆ Immunoassay
• ☆ Biochemical Assays
• ☆ Structural Biology
• ☆ Enzyme Activity Assays
• ☆ Genetics
• ☆ Microarrays
• ☆ Epigenetics
• ☆ PCR
• ☆ Molecular Cloning
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Mutagenesis
• ☆ Recombinant DNA
• ☆ DNA/Gene Synthesis
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ ChIP-Seq
• ☆ Kinases
• ☆ Cell Biology
• ☆ Cell Signaling Pathways
• ☆ Gene Regulation
• ☆ Basic Immunology
• ☆ Adjuvant & Antigen Research
• ☆ Biotechnology & Bioengineering
• ☆ Recombinant Protein Expression
• ☆ Microscopy
• ☆ Light Microscopy
• ☆ Fluorescence Microscopy
• ☆ Agronomy & Crop Science
• ☆ Plant Biotechnology
• ☆ Biological Engineering
• ☆ Software Engineering
• ☆ Information Technology
• ☆ Database Management
• ☆ Image Processing
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Big Data Analytics
• ☆ Data Collection
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Text Mining & Analytics
• ☆ Data Mining
• ☆ Data Cleaning
• ☆ Natural Language Processing
• ☆ Data Architecture
• ☆ Neural Networks
• ☆ Pattern Recognition
• ☆ Artificial Intelligence
• ☆ Statistics
• ☆ Regression Analysis
• ☆ Multivariate Analysis
• ☆ Nonlinear Regression
• ☆ Correlation Analysis
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Structural Bioinformatics
• ☆ Knowledge Management
• ☆ Synthetic Biology
• ☆ Agricultural Biotechnology
• ☆ Biomolecular Engineering
• ☆ Gene Synthesis
• ☆ Genetic Engineering
• ☆ Gene Editing/CRISPR
• ☆ Protein/Enzyme Engineering
• ☆ Biological Taxonomy/Classification
• ☆ Blotting
• ☆ Circadian Rhythm Research
• ☆ Python
• ☆ SQL
• ☆ Excel
• ☆ Tensorflow
• ☆ R
• ☆ Tableau
• ☆ Scikit-learn
• ☆ Hadoop
• ☆ Markup Languages
• ☆ Infectious Disease
• ☆ Antibiotic Resistance Research

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing, Copywriting, Creative Writing, General Proofreading & Editing, Translation

Research Meta-Research, Feasibility Study, Technology Scouting, Gray Literature Search, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Work Experience

Researcher

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica

October 2019 - June 2024

Research Assistant

University of California Davis

June 2017 - June 2019

Postdoctoral Researcher

State University of Campinas

September 2012 - September 2016

Visiting Postdoctoral Researcher

University of Texas at Arlington

August 2013 - July 2014

Senior Technician

Alellyx Applied Genomics

September 2005 - February 2008

Education

Ph.D. (Molecular Biology and Genetic Engineering Center - CBMEG)

State University of Campinas

March 2008 - March 2012

Ph.D. Student Abroad (Department of Biology)

University of Texas at Arlington

November 2011 - February 2012

Bachelor of Science (B.Sc.) (Department of Biology)

State University of Campinas

February 2002 - June 2006

Certifications

• Specialization in Machine Learning & Big Data

  State University of Campinas

  http://www.extecamp.unicamp.br/validacert_novo.asp 6817d368eaf255062b9563944ee85400

  January 2023 - Present

Publications

JOURNAL ARTICLE

Raquel F. Stefanello, Leonardo F. Vilela, Larissa P. Margalho, Elizabeth Harumi Nabeshima, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Dariane Trivisiol da Silva, Rosane Schwan, Tatiana Emanuelli, Melline F. Noronha, et al. (2024). Dynamics of microbial ecology and their bio-preservative compounds formed during the panettones elaboration using sourdough-isolated strains as starter cultures . Food Bioscience.

Cleverson C. Matiolli, Rafael Cavém Soares, Hugo L. S. Alves, Isabel A. Abreu, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli (2022). Turning the Knobs: The Impact of Post-translational Modifications on Carbon Metabolism . Frontiers in Plant Science.

Joana Marques, Cleverson C. Matiolli, Isabel A. Abreu, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli(2022). Visualization of a curated Oryza sativa L. CDPKs Protein-Protein Interaction Network (CDPK-OsPPIN) . microPublication Biology

Américo Viana, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, David W. Newman, João Guilherme Portugal Vieira, et al. (2021). The sugar‐responsive circadian clock regulator bZIP63 modulates plant growth . New Phytologist.

Hugo L S Alves, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Cleverson Carlos Matiolli, Rafael C Soares, Maria Cecilia Almadanim, M. Margarida Oliveira, et al. (2021). Carbon/nitrogen metabolism and stress response networks – calcium-dependent protein kinases as the missing link? . Journal of Experimental Botany.

Oblessuc, P.R., Obulareddy, N., DeMott, L., Matiolli, C.C., Thompson, B.K., Melotto, M.(2020). JAZ4 is involved in plant defense, growth, and development in Arabidopsis . Plant Journal. 101. (2). p. 371-383.

Oblessuc, P.R., Matiolli, C.C., Melotto, M.(2020). Novel molecular components involved in callose-mediated Arabidopsis defense against Salmonella enterica and Escherichia coli O157:H7 . BMC Plant Biology. 20. (1).

Matiolli, C.C., Melotto, M.(2018). A comprehensive arabidopsis yeast two-hybrid library for protein-protein interaction studies: A resource to the plant research community . Molecular Plant-Microbe Interactions. 31. (9). p. 899-902.

Frank, A., Matiolli, C.C., Viana, A.J.C., Hearn, T.J., Kusakina, J., Belbin, F.E., Wells Newman, D., Yochikawa, A., Cano-Ramirez, D.L., Chembath, A., et al.(2018). Circadian Entrainment in Arabidopsis by the Sugar-Responsive Transcription Factor bZIP63 . Current Biology. 28. (16). p. 2597-2606.e6.

Ohse, K.C., Matiolli, C.C., Scarpassa, V.M., Santos, V.S., Tadei, W.P., Rafael, M.S.(2017). Differential expression of trypsin-3 and phosrestin ii genes in the main malaria vector, Anopheles darlingi, from the Brazilian Amazon Region . Genetics and Molecular Research. 16. (4).

Oblessuc, P.R., Matiolli, C.C., Chiorato, A.F., Camargo, L.E.A., Benchimol-Reis, L.L., Melotto, M.(2015). Common bean reaction to angular leaf spot comprises transcriptional modulation of genes in the ALS10.1 QTL . Frontiers in Plant Science. 6. (MAR).

Cardoso, G.A., Matiolli, C.C., De Azeredo-Espin, A.M.L., Torres, T.T.(2014). Selection and validation of reference genes for functional studies in the calliphoridae family . Journal of Insect Science. 14.

Duarte, G.T., Matiolli, C.C., Pant, B.D., Schlereth, A., Scheible, W.-R., Stitt, M., Vicentini, R., Vincentz, M.(2013). Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development . Journal of Experimental Botany. 64. (14). p. 4301-4312.

Marinotti, O., Cerqueira, G.C., De Almeida, L.G.P., Ferro, M.I.T., Da Silva Loreto, E.L., Zaha, A., Teixeira, S.M.R., Wespiser, A.R., E Silva, A.A., Schlindwein, A.D., et al.(2013). The Genome of Anopheles darlingi, the main neotropical malaria vector . Nucleic Acids Research. 41. (15). p. 7387-7400.

Matiolli, C.C., Tomaz, J.P., Duarte, G.T., Prado, F.M., del Bem, L.E.V., Silveira, A.B., Gauer, L., Corrêa, L.G.G., Drumond, R.D., Viana, A.J., et al.(2011). The arabidopsis bZIP gene AtbZIP63 is a sensitive integrator of transient abscisic acid and glucose signals . Plant Physiology. 157. (2). p. 692-705.