Profile Details

Contact

★★★★★

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USD 200 /hr

★★★★★

☆☆☆☆☆

Hire Dr. Biter B.

United States

USD 200 /hr

Multi-omics Data Scientist & Engineer & Consultant

Profile Summary

I am a data scientist & engineer & consultant with an enthusiasm to solve beautiful yet complex puzzles. For over ten years, I have designed, implemented, adapted, and applied supervised and unsupervised learning methods to multi-omics data, then followed by interpretation and design of biological validation experiments independently or with a team of international scientists. Recently at Stanford, I uncovered mechanisms of stem cell state transitions; before as a Ph.D. student in Switzerland, I shed light on the functions of several RNA-binding proteins. I look forward to solving the grand challenges of the world as part of trans-disciplinary teams.

Subject Matter Expertise

• ★ Omics
• ★ Data Science
• ★ Bioinformatics
• ☆ Molecular Biology
• ☆ Epigenetics
• ☆ Next Generation Sequencing (NGS)
• ☆ RNA Sequencing
• ☆ Computer Engineering
• ☆ Software Engineering
• ☆ Automation
• ☆ Machine Learning
• ☆ Computer Vision
• ☆ Earth & Atmospheric Science
• ☆ Cell Aging
• ☆ Python
• ☆ Cancer Research
• ☆ Technical & Scientific Writing
• ☆ Grant Writing

Services

• Writing
• Research
• Data & AI

Writing Technical Writing

Research Fact Checking, Gray Literature Search, Systematic Literature Review, Secondary Data Collection

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

Work Experience

Stanford University

July 2014 - Present

Education

Ph.D. in Bioinformatics

University of Basel

December 2007 - December 2012

M.S. in Molecular Biology and Genetics

Bilkent University

September 2004 - January 2007

B.S. in Computer Engineering

Middle East Technical University

September 2000 - June 2004

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

(2018). Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris . Nature.

Yildiz, G., Arslan-Ergul, A., Bagislar, S., Konu, O., Yuzugullu, H., Gursoy-Yuzugullu, O., Ozturk, N., Ozen, C., Ozdag, H., Erdal, E., et al.(2013). Genome-Wide Transcriptional Reorganization Associated with Senescence-to-Immortality Switch during Human Hepatocellular Carcinogenesis . PLoS ONE. 8. (5).

Hausser, J., Syed, A.P., Bilen, B., Hausser, J., Syed, A.P., Bilen, B., Zavolan, M.(2013). Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation . Genome Research. 23. (4). p. 604-615.

Jaskiewicz, L., Bilen, B., Hausser, J., Zavolan, M.(2012). Argonaute CLIP - A method to identify in vivo targets of miRNAs . Methods. 58. (2). p. 106-112.

Rammelt, C., Bilen, B., Zavolan, M., Keller, W.(2011). PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif . RNA. 17. (9). p. 1737-1746.