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Profile Details
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★★★★★
☆☆☆☆☆
USD 80 /hr
Hire Dr. Zarrin B.
Pakistan
USD 80 /hr

Academic writer | editor | data analyst | illustrator with 5+ years of research experience

Profile Summary
Subject Matter Expertise
Services
Writing Medical Writing, Technical Writing, Creative Writing, Newswriting, General Proofreading & Editing
Research Fact Checking, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection
Consulting Scientific and Technical Consulting
Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights
Product Development Product Evaluation, Concept Development
Work Experience

SSO

Alpha Genomics (Pvt) Limited

May 2023 - Present

ICCBS, University of Karachi

January 2018 - March 2023

Conservatoire national des arts et métiers (CNAM)

October 2018 - September 2019

Education

PhD (Biosciences)

Fatima Jinnah Women University

September 2014 - December 2017

Research

University of British Columbia

2017 - 2017

BS (Hons) Bioinformatics

International Islamic University

September 2007 - July 2011

Certifications
Publications
JOURNAL ARTICLE
Zarrin Basharat, Xiaoying Zhou, Shengchun Jin, Jingyi Pan, Qingyi Lin, Shaopeng Yang, Yajing Lu, Minhao Qiu, Peter C. Ambe, Vincent Zimmer, et al. (2023). Relationship between Cholesterol-Related Lipids and Severe Acute Pancreatitis: From Bench to Bedside . Journal of Clinical Medicine.
Zarrin Basharat, Khurshid Jalal, Kanwal Khan, Ajmal Hayat, Sulaiman Mohammed Alnasser, Alotaibi Meshal (2023). Pan-Genomics of Escherichia albertii for Antibiotic Resistance Profiling in Different Genome Fractions and Natural Product Mediated Intervention: In Silico Approach . Life.
Zarrin Basharat, Xiaoying Zhou, Shengchun Jin, Jingyi Pan, Qingyi Lin, Shaopeng Yang, Yajing Lu, Minhao Qiu, Peter C. Ambe, Vincent Zimmer, et al. (2023). Relationship between Cholesterol-Related Lipids and Severe Acute Pancreatitis: From Bench to Bedside . Journal of Clinical Medicine.
Zarrin Basharat, Khurshid Jalal, Kanwal Khan, Ajmal Hayat, Sulaiman Mohammed Alnasser, Alotaibi Meshal (2023). Pan-Genomics of <i>Escherichia albertii</i> for Antibiotic Resistance Profiling in Different Genome Fractions and Natural Product Mediated Intervention: In Silico Approach . Life.
Afzal M, Hassan SS, Sohail S, Camps I, Khan Y, Basharat Z, Karim A, Aurongzeb M, Irfan M, Salman M, et al.(2023). Genomic landscape of the emerging XDR Salmonella Typhi for mining druggable targets clpP, hisH, folP and gpmI and screening of novel TCM inhibitors, molecular docking and simulation analyses . BMC microbiology.
Zarrin Basharat, Muhammad Irfan, Muhammad Tariq, Rao Muhammad Abid Khan, Muhammad Jahanzaeb, Muhammad Shakeel, Zaib un Nisa, Mohsin Shahzad, Muhammad Jahanzaib, Syed Tarique Moin, et al. (2023). Genomic analysis of Chryseobacterium indologenes and conformational dynamics of the selected DD-peptidase . Research in Microbiology.
Zarrin Basharat, Norah A. Alturki, Mutaib M. Mashraqi, Khurshid Jalal, Kanwal Khan, Ahmad Alzamami (2022). Therapeutic Target Identification and Inhibitor Screening against Riboflavin Synthase of Colorectal Cancer Associated Fusobacterium nucleatum . Cancers.
Zarrin Basharat, Norah alturki, Mutaib Mashraqi , Khurshid Jalal, Kanwal Khan, AHMAD ALZAMAMI (2022). Therapeutic Target Identification and Inhibitor Screening against Riboflavin Synthase of Colorectal Cancer Associated <i>Fusobacterium nucleatum</i> . Cancers.
Hassan SS, Shams R, Camps I, Basharat Z, Sohail S, Khan Y, Ullah A, Irfan M, Ali J, Bilal M, et al.(2022). Subtractive sequence analysis aided druggable targets mining in Burkholderia cepacia complex and finding inhibitors through bioinformatics approach . Molecular diversity.
Hong W, Zheng L, Lu Y, Qiu M, Yan Y, Basharat Z, Zippi M, Zimmer V, Geng W(2022). Non-linear correlation between amylase day 2 to day 1 ratio and incidence of severe acute pancreatitis . Frontiers in cellular and infection microbiology.
Zhang Y, Wang Z, Basharat Z, Hu M, Hong W, Chen X(2022). Nomogram of intra-abdominal infection after surgery in patients with gastric cancer: A retrospective study . Frontiers in oncology.
Zarrin Basharat, Kanwal Khan, Khurshid Jalal, Sulaiman Mohammed Alnasser, Sania Majeed, Marium Zehra (2022). Inferring Therapeutic Targets in <i>Candida albicans</i> and Possible Inhibition through Natural Products: A Binding and Physiological Based Pharmacokinetics Snapshot . Life.
Zhou X, Jin S, Pan J, Lin Q, Yang S, Ambe PC, Basharat Z, Zimmer V, Wang W, Hong W(2022). Damage associated molecular patterns and neutrophil extracellular traps in acute pancreatitis . Frontiers in cellular and infection microbiology.
Hu T, Zhang J, Liu Y, Chen L, Cen W, Wu W, Huang Q, Sun X, Stock S, Zippi M, et al.(2022). Evaluation of the risk factors for severe complications and surgery of intestinal foreign bodies in adults: a single-center experience with 180 cases . Gastroenterology report.
Zarrin Basharat, Khurshid Jalal, Kanwal Khan, Ajmal Hayat, Diyar Ahmad, Ghallab Alotaibi, Reaz Uddin, Mutaib M. Mashraqi, Ahmad Alzamami, Muhammad Aurongzeb (2022). Mining therapeutic targets from the antibiotic-resistant Campylobacter coli and virtual screening of natural product inhibitors against its riboflavin synthase . Molecular Diversity.
Hong W, Lu Y, Zhou X, Jin S, Pan J, Lin Q, Yang S, Basharat Z, Zippi M, Goyal H(2022). Usefulness of Random Forest Algorithm in Predicting Severe Acute Pancreatitis . Frontiers in cellular and infection microbiology.
Zarrin Basharat, Kanwal Khan, Khurshid Jalal, Mutaib M. Mashraqi, Ahmad Alzamami, Saleh Alshamrani, Reaz Uddin(2022). Identification of Therapeutic Targets in an Emerging Gastrointestinal Pathogen Campylobacter ureolyticus and Possible Intervention through Natural Products . Antibiotics. 11. (5). p. 680. {MDPI} {AG}
Zarrin Basharat, Kanwal Khan, Khurshid Jalal, Mutaib Mashraqi , AHMAD ALZAMAMI, Saleh Alshamrani, Reaz Uddin (2022). Identification of Therapeutic Targets in an Emerging Gastrointestinal Pathogen <i>Campylobacter ureolyticus</i> and Possible Intervention through Natural Products . Antibiotics.
Zarrin Basharat, En-Shyh Lin, Yen-Hua Huang, Ren-Hong Luo, Cheng-Yang Huang(2022). Crystal Structure of an SSB Protein from Salmonella enterica and Its Inhibition by Flavanonol Taxifolin . International Journal of Molecular Sciences. 23. (8). p. 4399. {MDPI} {AG}
Zarrin Basharat, En-Shyh Lin, Yen-Hua Huang, Ren-Hong Luo, Cheng-Yang Huang (2022). Crystal Structure of an SSB Protein from <i>Salmonella enterica</i> and Its Inhibition by Flavanonol Taxifolin . International Journal of Molecular Sciences.
Hong W, Zhou X, Jin S, Lu Y, Pan J, Lin Q, Yang S, Xu T, Basharat Z, Zippi M, et al.(2022). A Comparison of XGBoost, Random Forest, and Nomograph for the Prediction of Disease Severity in Patients With COVID-19 Pneumonia: Implications of Cytokine and Immune Cell Profile . Frontiers in cellular and infection microbiology.
Basharat Z, Khan K, Jalal K, Ahmad D, Hayat A, Alotaibi G, Al Mouslem A, Aba Alkhayl FF, Almatroudi A(2022). An in silico hierarchal approach for drug candidate mining and validation of natural product inhibitors against pyrimidine biosynthesis enzyme in the antibiotic-resistant Shigella flexneri . Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
Basharat Z, Moon KM, Foster LJ, Yasmin A(2022). Impact of Azo Dyes and Ibuprofen on the Proteome of <i>Serratia nematodiphila</i> sp. MB307 . Current protein & peptide science.
Basharat Z, Akhtar U, Khan K, Alotaibi G, Jalal K, Abbas MN, Hayat A, Ahmad D, Hassan SS(2021). Differential analysis of Orientia tsutsugamushi genomes for therapeutic target identification and possible intervention through natural product inhibitor screening . Computers in biology and medicine.
Zarrin Basharat, Khurshid Jalal, Kanwal Khan, Diyar Ahmad, Ajmal Hayat, Muhammad Naseer Abbas, Saad Alghamdi, Mazen Almehmadi, Muhammad Umar Khayam Sahibzada (2021). Pan-Genome Reverse Vaccinology Approach for the Design of Multi-Epitope Vaccine Construct against Escherichia albertii . International Journal of Molecular Sciences.
Zarrin Basharat, Khurshid Jalal, Kanwal Khan, Diyar Ahmad, Ajmal Hayat, Muhammad Naseer Abbas, Saad Alghamdi, Mazen Almehmadi, Muhammad Umar Khayam Sahibzada (2021). Pan-Genome Reverse Vaccinology Approach for the Design of Multi-Epitope Vaccine Construct against <i>Escherichia albertii</i> . International Journal of Molecular Sciences.
Hong W, Chen Q, Qian S, Basharat Z, Zimmer V, Wang Y, Zippi M, Pan J(2021). Critically Ill <i>vs</i>. Non-Critically Ill Patients With COVID-19 Pneumonia: Clinical Features, Laboratory Findings, and Prediction . Frontiers in cellular and infection microbiology.
Basharat Z, Jahanzaib M, Rahman N(2021). Therapeutic target identification via differential genome analysis of antibiotic resistant Shigella sonnei and inhibitor evaluation against a selected drug target . Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
Zarrin Basharat, Hafiz Abdul Rehman, Farheen Ramzan, Muhammad Shakeel, Muhammad Usman Ghani Khan, Ishtiaq Ahmad Khan(2021). Comprehensive comparative genomic and microsatellite analysis of SARS, MERS, BAT‐SARS, and COVID‐19 coronaviruses . Journal of Medical Virology. 93. (7). p. 4382--4391. Wiley
Zarrin Basharat, Noor Rahman, Fawad Ali, Muhammad Shehroz, Muhammad Kazim Khan, Philippe JEANDET, Eugenie Nepovimova, Kamil Kuca, Prof. Dr. Haroon Khan (2020). Vaccine Design from the Ensemble of Surface Glycoprotein Epitopes of SARS-CoV-2: An Immunoinformatics Approach . Vaccines.
Zarrin Basharat, Noor Rahman, Muhammad Yousuf , Giuseppe Castaldo, Luca Rastrelli, Prof. Dr. Haroon Khan (2020). Virtual Screening of Natural Products against Type II Transmembrane Serine Protease (TMPRSS2), the Priming Agent of Coronavirus 2 (SARS-CoV-2) . Molecules.
Hong, W., Zimmer, V., Basharat, Z., Zippi, M., Stock, S., Geng, W., Bao, X., Dong, J., Pan, J., Zhou, M.(2020). Association of total cholesterol with severe acute pancreatitis: A U-shaped relationship . Clinical Nutrition. 39. (1). p. 250-257.
Messaoudi, A., Zoghlami, M., Basharat, Z., Sadfi-Zouaoui, N.(2019). Identification of a potential inhibitor targeting murc ligase of the drug resistant pseudomonas aeruginosa strain through structure-based virtual screening approach and in vitro assay . Current Pharmaceutical Biotechnology. 20. (14). p. 1203-1212.
Brown, P., Zhou, Y., Tan, A.-C., El-Esawi, M.A., Liehr, T., Blanck, O., Gladue, D.P., Almeida, G.M.F., Cernava, T., Sorzano, C.O., et al.(2019). Large expert-curated database for benchmarking document similarity detection in biomedical literature search . Database. 2019. p. 1-67.
Zarrin Basharat, Wandong Hong, Lemei Dong, Simon Stock, Maddalena Zippi, Mengtao Zhou (2018). Prevalence and characteristics of colonic adenoma in mainland China . Cancer Management and Research.
Zarrin Basharat, Lu&#237;s A. B. Novo, Azra Yasmin (2018). Genome Editing Weds CRISPR: What Is in It for Phytoremediation? . Plants.
Zarrin Basharat, Azra Yasmin, Tongtong He, Yigang Tong (2018). Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207 . Scientific Reports.
Messaoudi, A., Basharat, Z., Naqvi, A.(2018). High throughput screening and molecular docking of calmodulin with antagonists of trifluoperazine and phenothiazine chemical class . Letters in Drug Design and Discovery. 15. (2). p. 136-142.
Basharat, Z., Tanveer, F., Yasmin, A., Shinwari, Z.K., He, T., Tong, Y.(2018). Genome of Serratia nematodiphila MB307 offers unique insights into its diverse traits . Genome. 61. (7). p. 469-476.
Geng, W., Jia, D., Wang, Y., Jin, S., Ren, Y., Liang, D., Zheng, A., Tang, H., Basharat, Z., Zimmer, V., et al.(2018). A prediction model for hypoxemia during routine sedation for gastrointestinal endoscopy . Clinics (Sao Paulo, Brazil). 73. p. e513.
Basharat, Z., Yasmin, A., Masood, N.(2018). Cancer immunomics in the age of information: Role in diagnostics and beyond . Current Pharmaceutical Design. 24. (32). p. 3818-3828.
Basharat, Z., Novo, L.A.B., Yasmin, A.(2018). Genome editing weds CRISPR: What is in it for phytoremediation? . Plants. 7. (3).
Hong, W., Dong, L., Stock, S., Basharat, Z., Zippi, M., Zhou, M.(2018). Prevalence and characteristics of colonic adenoma in mainland china . Cancer Management and Research. 10. p. 2743-2755.
Basharat, Z., Yasmin, A., He, T., Tong, Y.(2018). Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207 . Scientific Reports. 8. (1).
Fateen, A., Ali, S.A., Baig, D.N., Basharat, Z.(2018). Profilin (pfn) isoforms transcriptional and bioinformatic exploration and Mus musculus brain tissues development . Gene Reports. 10. p. 177-183.
Zarrin Basharat, Wandong Hong, Wujun Geng, Bicheng Chen, Qingsong Wu, Vincent Zimmer, Mengtao Zhou (2017). Predictors of acute pancreatitis with low elevation of serum amylase . Therapeutics and Clinical Risk Management.
Zarrin Basharat, Shumaila Zaib, Azra Yasmin(2017). Computational study of some amoebicidal phytochemicals against heat shock protein of Naegleria fowleri . Gene Reports. 6. p. 158--162. Elsevier {BV}
Zarrin Basharat, Sarah Rizwan Qazi, Azra Yasmin, Syed Aoun Ali, Deeba Noreen Baig(2017). Prediction of post translation modifications at the contact site between Anaplasma phagocytophilum and human host during autophagosome induction using a bioinformatic approach . Molecular and Cellular Probes. 31. p. 76--84. Elsevier {BV}
Zarrin Basharat, Suhan Lin, Wandong Hong, Qipin Wang, Jingye Pan, Mengtao Zhou (2017). Blood Urea Nitrogen as a Predictor of Severe Acute Pancreatitis Based on the Revised Atlanta Criteria: Timing of Measurement and Cutoff Points . Canadian Journal of Gastroenterology and Hepatology.
Basharat, Z., Zaib, S., Yasmin, A.(2017). Computational study of some amoebicidal phytochemicals against heat shock protein of Naegleria fowleri . Gene Reports. 6. p. 158-162.
Hong, W., Lin, S., Zippi, M., Geng, W., Stock, S., Basharat, Z., Cheng, B., Pan, J., Zhou, M.(2017). Serum Albumin Is Independently Associated with Persistent Organ Failure in Acute Pancreatitis . Canadian Journal of Gastroenterology and Hepatology. 2017.
Lin, S., Hong, W., Basharat, Z., Wang, Q., Pan, J., Zhou, M.(2017). Blood urea nitrogen as a predictor of severe acute pancreatitis based on the revised atlanta criteria: timing of measurement and cutoff points . Canadian Journal of Gastroenterology and Hepatology. 2017.
Hong, W., Geng, W., Chen, B., Basharat, Z., Wu, Q., Zimmer, V., Zhou, M.(2017). Predictors of acute pancreatitis with low elevation of serum amylase . Therapeutics and Clinical Risk Management. 13. p. 1577-1584.
Zarrin Basharat, Abdelmonaem Messaoudi, Sehrish Ruba, Azra Yasmin(2016). NQO1 rs1800566 polymorph is more prone to NOx induced lung injury: Endorsing deleterious functionality through informatics approach . Gene. 591. (1). p. 14--20. Elsevier {BV}
Zarrin Basharat, Abdelmonaem Messaoudi, Sehrish Ruba, Azra Yasmin(2016). NQO1 rs1800566 polymorph is more prone to NOx induced lung injury: Endorsing deleterious functionality through informatics approach . Gene. 591. (1). p. 14--20. Elsevier {BV}
Zarrin Basharat, Naila Tariq, Saba Butt, Deeba Noreen Baig(2016). Distribution analysis of profilin isoforms at transcript resolution with mRNA-seq and secondary structure in various organs of Rattus norvegicus . Gene. 589. (1). p. 49--55. Elsevier {BV}
Zarrin Basharat, Naila Tariq, Saba Butt, Deeba Noreen Baig(2016). Distribution analysis of profilin isoforms at transcript resolution with mRNA-seq and secondary structure in various organs of Rattus norvegicus . Gene. 589. (1). p. 49--55. Elsevier {BV}
Hussein NR, Tunjel I, Basharat Z, Taha A, Irving W(2016). The treatment of HCV in patients with haemoglobinopathy in Kurdistan Region, Iraq: a single centre experience . Epidemiology and infection.
Hussein, N.R., Tunjel, I., Basharat, Z., Taha, A., Irving, W.(2016). The treatment of HCV in patients with haemoglobinopathy in Kurdistan Region, Iraq: A single centre experience . Epidemiology and Infection. 144. (8). p. 1634-1640.
Zarrin Basharat, Azra Yasmin(2015). In silico assessment of phosphorylation and O-β-GlcNAcylation sites in human NPC1 protein critical for Ebola virus entry . Infection, Genetics and Evolution. 34. p. 326--338. Elsevier {BV}
Zarrin Basharat, Nawfal R. Hussein, Ary H. Muhammed, Samim A. Al-Dabbagh, Patrick Butaye(2015). Comparative Evaluation of MRSA Nasal Colonization Epidemiology in the Urban and Rural Secondary School Community of Kurdistan, Iraq . PLoS ONE. 10. (5). p. e0124920. Public Library of Science ({PLoS})
Basharat Zarrin(2015). Computational sequence analysis and in silico modeling of a stripe rust resistance protein encoded by wheat TaHSC70 gene . J. Comput. Biol. Bioinform. Res. 7. (1). p. 1--7. Academic Journals
Zarrin Basharat, Azra Yasmin(2015). Survey of compound microsatellites in multiple Lactobacillus genomes . Can. J. Microbiol. 61. (12). p. 898--902. Canadian Science Publishing
Basharat Zarrin(2014). Evaluating codon bias perspective in barbiturase gene using multivariate analysis . Afr. J. Biotechnol. 13. (2). p. 194--201. Academic Journals
BOOK
Basharat, Z., Bibi, M., Yasmin, A.(2017). Implications of molecular docking assay for bioremediation . Handbook of Research on Inventive Bioremediation Techniques. p. 24-45.
REPORT
Zarrin Basharat, Deeba Noreen Baig, Azra Yasmin(2016). Digital dissection of arsenate reductase enzyme from an arsenic hyperccumulating fern Pteris vittata . Cold Spring Harbor Laboratory Press
CONFERENCE PAPER
Zarrin Basharat, Azra Yasmin(2016). Bioinformatic analysis of human Gαq Q209 missense mutations associated with uveal melanoma . 2016 13th International Bhurban Conference on Applied Sciences and Technology (IBCAST). Institute of Electrical {\&} Electronics Engineers ({IEEE})