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Profile Details
Contact
★★★★★
☆☆☆☆☆
USD 100 /hr
Hire Dr. Zarrin B.
Pakistan
USD 100 /hr

Academic writer | editor | data analyst | illustrator with 5+ years of research experience

Profile Summary
Subject Matter Expertise
Services
Writing Clinical Trial Documentation, Technical Writing, Newswriting
Research Fact Checking, Gray Literature Search, Systematic Literature Review, Secondary Data Collection
Consulting Scientific and Technical Consulting
Data & AI Statistical Analysis, Data Visualization
Product Development Formulation
Work Experience

Institut Pasteur of Shanghai Chinese Academy of Sciences

July 2020 - Present

ICCBS, University of Karachi

January 2018 - June 2020

Conservatoire national des arts et métiers (CNAM)

October 2018 - September 2019

Education

PhD (Biosciences)

Fatima Jinnah Women University

September 2014 - December 2017

Research

University of British Columbia

2017 - 2017

BS (Hons) Bioinformatics

International Islamic University

September 2007 - July 2011

Certifications
  • Certification details not provided.
Publications
JOURNAL ARTICLE
(2020). Vaccine Design from the Ensemble of Surface Glycoprotein Epitopes of SARS-CoV-2: An Immunoinformatics Approach . Vaccines.
(2020). An overview of algorithms and associated applications for single cell RNA-Seq data imputation . Current Genomics.
(2020). Virtual Screening of Natural Products against Type II Transmembrane Serine Protease (TMPRSS2), the Priming Agent of Coronavirus 2 (SARS-CoV-2) . Molecules.
(2020). Sex differences in the relationship among alcohol, smoking, and Helicobacter pylori infection in asymptomatic individuals . Journal of International Medical Research.
Hong, W., Zimmer, V., Basharat, Z., Zippi, M., Stock, S., Geng, W., Bao, X., Dong, J., Pan, J., Zhou, M.(2020). Association of total cholesterol with severe acute pancreatitis: A U-shaped relationship . Clinical Nutrition. 39. (1). p. 250-257.
(2019). Prevalence of Helicobacter pylori infection in a third-tier Chinese city: relationship with gender, age, birth-year and survey years . Microbiota in Health and Disease.
(2019). Cancer Immunomics in the Age of Information: Role in Diagnostics and Beyond . Current Pharmaceutical Design.
Messaoudi, A., Zoghlami, M., Basharat, Z., Sadfi-Zouaoui, N.(2019). Identification of a potential inhibitor targeting murc ligase of the drug resistant pseudomonas aeruginosa strain through structure-based virtual screening approach and in vitro assay . Current Pharmaceutical Biotechnology. 20. (14). p. 1203-1212.
Brown, P., Zhou, Y., Tan, A.-C., El-Esawi, M.A., Liehr, T., Blanck, O., Gladue, D.P., Almeida, G.M.F., Cernava, T., Sorzano, C.O., et al.(2019). Large expert-curated database for benchmarking document similarity detection in biomedical literature search . Database. 2019. p. 1-67.
(2018). A prediction model for hypoxemia during routine sedation for gastrointestinal endoscopy . Clinics.
Zarrin Basharat, Azra Yasmin, Tongtong He, Yigang Tong(2018). Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus {MB}207 . Scientific Reports. 8. (1). Springer Nature
Zarrin Basharat, Wandong Hong, Lemei Dong, Simon Stock, Maddalena Zippi, Mengtao Zhou (2018). Prevalence and characteristics of colonic adenoma in mainland China . Cancer Management and Research.
(2018). Genome of Serratia nematodiphila MB307 offers unique insights into its diverse traits . Genome.
(2018). Genome Editing Weds CRISPR: What Is in It for Phytoremediation? . Plants.
Hong, W., Dong, L., Stock, S., Basharat, Z., Zippi, M., Zhou, M.(2018). Prevalence and characteristics of colonic adenoma in mainland china . Cancer Management and Research. 10. p. 2743-2755.
Masood, N., Basharat, Z., Khan, T., Yasmin, A.(2018). Erratum to: Entangling Relation of Micro RNA-let7, miRNA-200 and miRNA-125 with Various Cancers (Pathology & Oncology Research, (2017), 23, 4, (707-715), 10.1007/s12253-016-0184-0) . Pathology and Oncology Research. 24. (2). p. 445.
Basharat, Z., Novo, L.A.B., Yasmin, A.(2018). Genome editing weds CRISPR: What is in it for phytoremediation? . Plants. 7. (3).
Basharat, Z., Yasmin, A., Masood, N.(2018). Cancer immunomics in the age of information: Role in diagnostics and beyond . Current Pharmaceutical Design. 24. (32). p. 3818-3828.
Basharat, Z., Yasmin, A., He, T., Tong, Y.(2018). Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207 . Scientific Reports. 8. (1).
Messaoudi, A., Basharat, Z., Naqvi, A.(2018). High throughput screening and molecular docking of calmodulin with antagonists of trifluoperazine and phenothiazine chemical class . Letters in Drug Design and Discovery. 15. (2). p. 136-142.
Geng, W., Jia, D., Wang, Y., Jin, S., Ren, Y., Liang, D., Zheng, A., Tang, H., Basharat, Z., Zimmer, V., et al.(2018). A prediction model for hypoxemia during routine sedation for gastrointestinal endoscopy . Clinics (Sao Paulo, Brazil). 73. p. e513.
Basharat, Z., Tanveer, F., Yasmin, A., Shinwari, Z.K., He, T., Tong, Y.(2018). Genome of Serratia nematodiphila MB307 offers unique insights into its diverse traits . Genome. 61. (7). p. 469-476.
Fateen, A., Ali, S.A., Baig, D.N., Basharat, Z.(2018). Profilin (pfn) isoforms transcriptional and bioinformatic exploration and Mus musculus brain tissues development . Gene Reports. 10. p. 177-183.
Zarrin Basharat, Wandong Hong, Wujun Geng, Bicheng Chen, Qingsong Wu, Vincent Zimmer, Mengtao Zhou (2017). Predictors of acute pancreatitis with low elevation of serum amylase . Therapeutics and Clinical Risk Management.
Zarrin Basharat, Azra Yasmin(2017). Energy landscape of a {GSTP}1 polymorph linked with cytological function decay in response to chemical stressors . Gene. 609. p. 19--27. Elsevier {BV}
Zarrin Basharat, Shumaila Zaib, Azra Yasmin(2017). Computational study of some amoebicidal phytochemicals against heat shock protein of Naegleria fowleri . Gene Reports. 6. p. 158--162. Elsevier {BV}
Zarrin Basharat, Sarah Rizwan Qazi, Azra Yasmin, Syed Aoun Ali, Deeba Noreen Baig(2017). Prediction of post translation modifications at the contact site between Anaplasma phagocytophilum and human host during autophagosome induction using a bioinformatic approach . Molecular and Cellular Probes. 31. p. 76--84. Elsevier {BV}
Lin, S., Hong, W., Basharat, Z., Wang, Q., Pan, J., Zhou, M.(2017). Blood urea nitrogen as a predictor of severe acute pancreatitis based on the revised atlanta criteria: timing of measurement and cutoff points . Canadian Journal of Gastroenterology and Hepatology. 2017.
Basharat, Z., Yasmin, A.(2017). Energy landscape of a GSTP1 polymorph linked with cytological function decay in response to chemical stressors . Gene. 609. p. 19-27.
Zarrin Basharat, Suhan Lin, Wandong Hong, Qipin Wang, Jingye Pan, Mengtao Zhou (2017). Blood Urea Nitrogen as a Predictor of Severe Acute Pancreatitis Based on the Revised Atlanta Criteria: Timing of Measurement and Cutoff Points . Canadian Journal of Gastroenterology and Hepatology.
Basharat, Z., Qazi, S.R., Yasmin, A., Ali, S.A., Baig, D.N.(2017). Prediction of post translation modifications at the contact site between Anaplasma phagocytophilum and human host during autophagosome induction using a bioinformatic approach . Molecular and Cellular Probes. 31. p. 76-84.
Basharat, Z., Zaib, S., Yasmin, A.(2017). Computational study of some amoebicidal phytochemicals against heat shock protein of Naegleria fowleri . Gene Reports. 6. p. 158-162.
Hong, W., Lin, S., Zippi, M., Geng, W., Stock, S., Basharat, Z., Cheng, B., Pan, J., Zhou, M.(2017). Serum Albumin Is Independently Associated with Persistent Organ Failure in Acute Pancreatitis . Canadian Journal of Gastroenterology and Hepatology. 2017.
Hong, W., Geng, W., Chen, B., Basharat, Z., Wu, Q., Zimmer, V., Zhou, M.(2017). Predictors of acute pancreatitis with low elevation of serum amylase . Therapeutics and Clinical Risk Management. 13. p. 1577-1584.
Zarrin Basharat, Abdelmonaem Messaoudi, Sehrish Ruba, Azra Yasmin(2016). {NQO}1 rs1800566 polymorph is more prone to {NOx} induced lung injury: Endorsing deleterious functionality through informatics approach . Gene. 591. (1). p. 14--20. Elsevier {BV}
Zarrin Basharat, Abdelmonaem Messaoudi, Sehrish Ruba, Azra Yasmin(2016). {NQO}1 rs1800566 polymorph is more prone to {NOx} induced lung injury: Endorsing deleterious functionality through informatics approach . Gene. 591. (1). p. 14--20. Elsevier {BV}
(2016). Computational study of some amoebicidal phytochemicals against heat shock protein of Naegleria fowleri . Gene Reports.
Zarrin Basharat, Naila Tariq, Saba Butt, Deeba Noreen Baig(2016). Distribution analysis of profilin isoforms at transcript resolution with {mRNA}-seq and secondary structure in various organs of Rattus norvegicus . Gene. 589. (1). p. 49--55. Elsevier {BV}
Zarrin Basharat, Naila Tariq, Saba Butt, Deeba Noreen Baig(2016). Distribution analysis of profilin isoforms at transcript resolution with {mRNA}-seq and secondary structure in various organs of Rattus norvegicus . Gene. 589. (1). p. 49--55. Elsevier {BV}
Tariq, N., Basharat, Z., Butt, S., Baig, D.N.(2016). Distribution analysis of profilin isoforms at transcript resolution with mRNA-seq and secondary structure in various organs of Rattus norvegicus . Gene. 589. (1). p. 49-55.
Basharat, Z., Messaoudi, A., Ruba, S., Yasmin, A.(2016). NQO1 rs1800566 polymorph is more prone to NOx induced lung injury: Endorsing deleterious functionality through informatics approach . Gene. 592. (1). p. 14-20.
Hussein, N.R., Tunjel, I., Basharat, Z., Taha, A., Irving, W.(2016). The treatment of HCV in patients with haemoglobinopathy in Kurdistan Region, Iraq: A single centre experience . Epidemiology and Infection. 144. (8). p. 1634-1640.
(2015). The treatment of HCV in patients with haemoglobinopathy in Kurdistan Region, Iraq: a single centre experience . Epidemiol. Infect.
Zarrin Basharat, Azra Yasmin(2015). In silico assessment of phosphorylation and O-$\upbeta$-{GlcNAcylation} sites in human {NPC}1 protein critical for Ebola virus entry . Infection, Genetics and Evolution. 34. p. 326--338. Elsevier {BV}
Zarrin Basharat, Nawfal R. Hussein, Ary H. Muhammed, Samim A. Al-Dabbagh, Patrick Butaye(2015). Comparative Evaluation of {MRSA} Nasal Colonization Epidemiology in the Urban and Rural Secondary School Community of Kurdistan, Iraq . {PLOS} {ONE}. 10. (5). p. e0124920. Public Library of Science ({PLoS})
(2015). Computational sequence analysis and in silico modeling of a stripe rust resistance protein encoded by wheat {TaHSC}70 gene . J. Comput. Biol. Bioinform. Res. 7. (1). p. 1--7. Academic Journals
Zarrin Basharat, Azra Yasmin(2015). Survey of compound microsatellites in multiple Lactobacillus genomes . Can. J. Microbiol. 61. (12). p. 898--902. Canadian Science Publishing
(2014). Evaluating codon bias perspective in barbiturase gene using multivariate analysis . Afr. J. Biotechnol. 13. (2). p. 194--201. Academic Journals
BOOK CHAPTER
(2020). Implications of Molecular Docking Assay for Bioremediation . Data Analytics in Medicine.
(2019). In-silico Approach to Target Cancer Cell DNA Repair Pathway . Phytochemistry: An in-silico and in-vitro Update.
(2017). Implications of molecular docking assay for bioremediation . Handbook of research on inventive bioremediation techniques.
BOOK
Basharat, Z., Bibi, M., Yasmin, A.(2017). Implications of molecular docking assay for bioremediation . Handbook of Research on Inventive Bioremediation Techniques. p. 24-45.
REPORT
Zarrin Basharat, Deeba Noreen Baig, Azra Yasmin(2016). Digital dissection of arsenate reductase enzyme from an arsenic hyperccumulating fern Pteris vittata . Cold Spring Harbor Laboratory Press
Zarrin Basharat, Azra Yasmin(2016). Understanding properties of the master effector of phage shock operon in Mycobacterium tuberculosis via bioinformatics approach . Cold Spring Harbor Laboratory Press
CONFERENCE PAPER
Zarrin Basharat, Azra Yasmin(2016). Bioinformatic analysis of human G$\upalpha$q Q209 missense mutations associated with uveal melanoma . Institute of Electrical {\&} Electronics Engineers ({IEEE})