Profile Details

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★★★★★

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USD 30 /hr

★★★★★

☆☆☆☆☆

Hire Dr. Vinicius M.

Brazil

USD 30 /hr

My expertise is in bioinformatics and computational biology applied to protein engineering.

Profile Summary

I work with computational models to address modern biological and biotechnological problems. I am able to program in several computational languages such as Fortran, C++, Perl and Python. More than that, I have vast experience in Monte Carlo and Molecular Dynamics simulations of biological systems. A scientific writer with 8+ years of experience.

Subject Matter Expertise

• ★ Biophysics
• ★ Bioinformatics
• ★ Drug Design
• ☆ Software Engineering
• ☆ Computer Simulation/Computational Modeling
• ☆ Protein/Enzyme Engineering
• ☆ Technical & Scientific Writing

Services

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing

Research Fact Checking, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

Product Development Formulation

Work Experience

PostDoc researcher

CNPEM

November 2018 - Present

Education

Ph.D.

UNESP

April 2013 - July 2017

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Fernando B. da Silva, Vinícius M. de Oliveira, Murilo N. Sanches, Vinícius G. Contessoto, Vitor B. P. Leite(2019). Rational Design of Chymotrypsin Inhibitor 2 by Optimizing Non-Native Interactions . Journal of Chemical Information and Modeling. 60. (2). p. 982--988. American Chemical Society ({ACS})

Vinícius M. de Oliveira, Daniel L. Z. Caetano, Fernando B. da Silva, Paulo R. Mouro, Antonio B. de Oliveira, Jr., Sidney J. de Carvalho, Vitor B. P. Leite(2019). {pH} and Charged Mutations Modulate Cold Shock Protein Folding and Stability: A Constant {pH} Monte Carlo Study . Journal of Chemical Theory and Computation. 16. (1). p. 765--772. American Chemical Society ({ACS})

Fernando Bruno da Silva, Vinícius G. Contessoto, Vinícius M. de Oliveira, Jane Clarke, Vitor B. P. Leite(2018). Non-Native Cooperative Interactions Modulate Protein Folding Rates . The Journal of Physical Chemistry B. American Chemical Society ({ACS})

Vinícius G. Contessoto, Vinícius M. de Oliveira, Bruno R. Fernandes, Gabriel G. Slade, Vitor B. P. Leite(2018). {TKSA}-{MC}: A web server for rational mutation through the optimization of protein charge interactions . Proteins: Structure, Function, and Bioinformatics. Wiley

Fernando B. da Silva, Vinícius G. Contessoto, Vinícius M. Martins de Oliveira, Jane Clarke, Vitor B.P. Leite(2018). Non-Native Cooperative Interactions Modulate Protein Folding Rates . The Journal of Physical Chemistry B. American Chemical Society ({ACS})

Martins de Oliveira, V., Godoi Contessoto, V.D., Bruno da Silva, F., Zago Caetano, D.L., Jurado de Carvalho, S., Pereira Leite, V.B.(2018). Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models . Biophysical Journal. 114. (1). p. 65-75.

Coronado, M.A., Caruso, I.P., De Oliveira, V.M., Contessoto, V.G., Leite, V.B.P., Kawai, L.A., Arni, R.K., Eberle, R.J.(2017). Cold shock protein a from Corynebacterium pseudotuberculosis: Role of electrostatic forces in the stability of the secondary structure . Protein and Peptide Letters. 24. (4). p. 358-367.

Daniel L. Z. Caetano, Guilherme V. Bossa, Vinicius M. de Oliveira, Matthew A. Brown, Sidney J. de Carvalho, Sylvio May(2017). Differential capacitance of an electric double layer with asymmetric solvent-mediated interactions: mean-field theory and Monte Carlo simulations . Physical Chemistry Chemical Physics. 19. (35). p. 23971--23981. Royal Society of Chemistry ({RSC})

Contessoto, V.G., De Oliveira, V.M., De Carvalho, S.J., Oliveira, L.C., Leite, V.B.P.(2016). NTL9 folding at constant pH: The importance of electrostatic interaction and pH dependence . Journal of Chemical Theory and Computation. 12. (7). p. 3270-3277.

Caetano, D.L.Z., Bossa, G.V., De Oliveira, V.M., Brown, M.A., De Carvalho, S.J., May, S.(2016). Role of ion hydration for the differential capacitance of an electric double layer . Physical Chemistry Chemical Physics. 18. (40). p. 27796-27807.

de Oliveira, V.M., de Carvalho, S.J.(2014). Adsorption of pH-responsive polyelectrolyte chains onto spherical macroions . The European physical journal. E, Soft matter. 37. (8).