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Hire Valerii P.

United States

USD 35 /hr

Skilled bioinformatician (M.S.) with 4 years in DNA/RNA-seq, specializing in cancer genomics, proficient in R/Python.

Profile Summary

Hi there! I'm a computational biologist who thrives on innovation and cutting-edge research. My journey began at KFU with a Bachelor's in Biochemistry, where my dedication was recognized with a state academic scholarship. At MIPT, I deepened my expertise with a Master's in Bioinformatics and Systems Biology, once again earning a state academic scholarship for research excellence. Key Achievements: · Co-authored pioneering research in Nature Communications on cancer genomics. · Crafted a somatic DNA-seq pipeline for mid-size commercial entities in cancer diagnostics. · Mentored students at MIPT's bioinformatics summer school. · Actively participated in various conferences, presenting both poster and oral sessions. · Engaged in multiple workshops and summer schools, expanding knowledge and networking. Technical Expertise: · Genomic Data Analysis: Extensive experience in DNA-seq and RNA-seq data processing and interpretation. Specialized skills in scRNA-seq analysis, particularly using Seurat. · Data Science & Visualization: Proficient in statistical analysis, data interpretation, and visualization using R tools like ggplot2, tidyverse, bioconductor, shiny, and rmarkdown. Python-based data manipulation and preliminary machine learning using sklearn, numpy, pandas, and seaborn. · Bioinformatics Toolkit: A comprehensive suite of tools including GATK, samtools, IGV, and more for in-depth bioinformatics analyses. · Systems & Development Management: Adept with essential tools like git, docker, and linux-server operations, and experienced in cluster management using slurm. Collaboration & Communication: · Friendly and open-minded person. · Worked well in diverse teams, bringing people together. · Enjoyed helping and mentoring newcomers. · Good at explaining complex ideas in simple terms.

Subject Matter Expertise

• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Python
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Markup Languages
• ☆ Colorectal Cancer

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Technology Scouting, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Healthcare Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Work Experience

Graduate Student

Fox Chase Cancer Center

September 2022 - Present

Bioinformatician/Computational Biologist

Moscow Institute of Physics and Technology

March 2021 - Present

Research Assistant - Research Associate

Fox Chase Cancer Center

March 2018 - September 2022

Bioinformatics Intern

BostonGene

July 2021 - September 2021

Education

Bioinformatics and Systems Biology

Moscow Institute of Physics and Technology - Russian Federation

September 2021 - July 2023

Biochemical Engineering and Biotechnology

Kazan State University - Russian Federation

September 2017 - July 2021

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Serebriiskii, I.G., Pavlov, V., Tricarico, R., Andrianov, G., Nicolas, E., Parker, M.I., Newberg, J., Frampton, G., Meyer, J.E., Golemis, E.A.(2022). Comprehensive characterization of PTEN mutational profile in a series of 34,129 colorectal cancers . Nature Communications. 13. (1).