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Profile Details
Subject Matter Expertise
Services
Work Experience
Post Doctoral Fellow
University of Gothenburg
December 2015 - Present 
Post Doctoral Fellow
Stazione Zoologica Anton Dohrn
February 2014 - September 2015
PhD Student
Stazione Zoologica Anton Dohrn
January 2011 - December 2013
System Analyst
National Institute of Plant Genome Research
July 2009 - December 2010
Junior Research Fellow
National Institute of Plant Genome Research
October 2008 - July 2009
Project Assistant
National Institute of Plant Genome Research
July 2008 - September 2008
Project Assistant
Indian Institute of Technology Delhi
February 2008 - June 2008
Education
PhD (Biology and Evolution of Marine Organisms)
Stazione Zoologica Anton Dohrn
January 2011 - December 2013
Certifications
- Certification details not provided.
Publications
JOURNAL ARTICLE
(2018). Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi . The ISME journal.
Basu S, Larsson E(2018). A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors . G3 (Bethesda, Md.).
Ashraf N, Basu S, Narula K, Ghosh S, Tayal R, Gangisetty N, Biswas S, Aggarwal PR, Chakraborty N, Chakraborty S(2018). Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility . Scientific reports.
(2018). Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA . Molecular cell.
(2017). Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom . The New phytologist.
(2017). Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse . International journal of genomics.
(2016). Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution . PLoS genetics.
(2016). The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome . Scientific reports.
(2015). Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs . Bioinformatics (Oxford, England).
(2015). Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis . BMC genomics.
Agrawal L, Narula K, Basu S, Shekhar S, Ghosh S, Datta A, Chakraborty N, Chakraborty S(2013). Comparative proteomics reveals a role for seed storage protein AmA1 in cellular growth, development, and nutrient accumulation . Journal of proteome research.
(2013). Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development . Nucleic acids research.
Basu S, Müller F, Sanges R(2013). Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements . BMC bioinformatics.
Ashraf N, Ghai D, Barman P, Basu S, Gangisetty N, Mandal MK, Chakraborty N, Datta A, Chakraborty S(2009). Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity . BMC genomics.
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