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USD 30 /hr
Hire Dr. Stefanie S.
Germany
USD 30 /hr
Senior Bioinformatician (PhD) specialized in cancer research, Spatial Transcriptomics & machine learning
Profile Summary
Subject Matter Expertise
Services
Writing
General Proofreading & Editing
Research
Scientific and Technical Research
Consulting
Scientific and Technical Consulting
Data & AI
Predictive Modeling,
Statistical Analysis,
Image Processing,
Image Analysis,
Algorithm Design-Non ML,
Algorithm Design-ML,
Data Visualization,
Big Data Analytics,
Text Mining & Analytics,
Data Mining,
Data Cleaning,
Data Processing,
Data Insights
Work Experience
Research Fellow - Bioinformatics
UCL, London, UK
January 2020 - January 2026
PhD student
Scilifelab
January 2016 - January 2020
Education
Masters (Science)
Uni Stockholm
January 2011 - January 2016
Certifications
- Certification details not provided.
Publications
JOURNAL ARTICLE
Hasan AMM, Cremaschi P, Wetterskog D, Jayaram A, Wong SQ, Williams S, Pasam A, Trigos A, Trujillo B, Grist E, et al.(2023). Copy number architectures define treatment-mediated selection of lethal prostate cancer clones . Nature communications.
Spatio-temporal analysis of prostate tumors in situ suggests pre-existence of treatment-resistant clones <head>
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</head> . Nature Communications.
Grist E, Friedrich S, Brawley C, Mendes L, Parry M, Ali A, Haran A, Hoyle A, Gilson C, Lall S, et al.(2022). Accumulation of copy number alterations and clinical progression across advanced prostate cancer . Genome medicine.
Kumar Sanjiv and Jos{\'{e}} Manuel Calder{\'{o}}n-Monta{\~{n}}o and Therese M. Pham and Tom Erkers and Viktoriia Tsuber and Ingrid Almlöf and Andreas Höglund and Yaser Heshmati and Brinton Seashore-Ludlow and Akhilesh Nagesh Danda and Helge Gad and Elisee Wiita and Camilla Göktürk and Azita Rasti and Stefanie Friedrich and Anders Centio and Montserrat Estruch and Thea Kristin V{\aa}tsveen and Nona Struyf and Torkild Visnes and Martin Scobie and Tobias Koolmeister and Martin Henriksson and Olov Wallner and Teresa Sandvall and Sören Lehmann and Kim Theilgaard-Mönch and Mathew J. Garnett and Päivi Östling and Julian Walfridsson and Thomas Helleday and Ulrika Warpman Berglund(2021). MTH1 Inhibitor TH1579 Induces Oxidative DNA Damage and Mitotic Arrest in Acute Myeloid Leukemia . Cancer Research. 81. (22). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 5733--5744. American Association for Cancer Research ({AACR})
Stefanie Friedrich, Erik L. L. Sonnhammer(2020). Fusion transcript detection using spatial transcriptomics . BMC Medical Genomics. 13. (1). Springer Science and Business Media {LLC}
Stefanie Friedrich, Remus Barbulescu, Thomas Helleday, Erik L. L. Sonnhammer(2020). MetaCNV - a consensus approach to infer accurate copy numbers from low coverage data . BMC Medical Genomics. 13. (1). Springer Science and Business Media {LLC}
Friedrich, S., Barbulescu, R., Helleday, T., Sonnhammer, E.L.L.(2020). MetaCNV - a consensus approach to infer accurate copy numbers from low coverage data . BMC medical genomics. 13. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 76.
Stefanie Friedrich, Erik L. L. Sonnhammer (2020). Additional file 2 of Fusion transcript detection using spatial transcriptomics . figshare.
Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson, et al.(2018). Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity . Nature Communications. 9 . ( 1 ). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1-13 .
Berglund, E., Maaskola, J., Schultz, N., Friedrich, S., Marklund, M., Bergenstråhle, J., Tarish, F., Tanoglidi, A., Vickovic, S., Larsson, L., et al.(2018). Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity . Nature Communications. 9. (1).
Yan, J., Friedrich, S., Kurgan, L.(2016). A comprehensive comparative review of sequencebased predictors of DNA- and RNA-binding residues . Briefings in Bioinformatics. 17. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 88-105.
Yan J, Friedrich S, Kurgan L(2015). A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues . Briefings in bioinformatics.
(2015). Adverse Drug Event classification of health records using dictionary based pre-processing and machine learning . Proceedings of the Sixth International Workshop on Health Text Mining and Information Analysis.
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