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Hire Dr. Soumitra P.

United States

USD 100 /hr

Computational Biology | Genomics | High performance computing | Machine learning

Profile Summary

See my google scholar profile https://scholar.google.co.in/citations?user=6dnFbTkAAAAJ&hl=en

Subject Matter Expertise

• ☆ Molecular Biology
• ☆ Omics
• ☆ Comparative Genomics
• ☆ Computer Science
• ☆ Distributed Computing
• ☆ Bioinformatics

Services

• Research
• Consulting
• Data & AI

Research Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-Non ML, Algorithm Design-ML

Work Experience

Staff Scientist

National Eye Institute

September 2022 - Present

Research Fellow

National Center for Biotechnology Information

October 2019 - September 2022

Postdoctoral Visiting Fellow

National Center for Biotechnology Information

January 2017 - October 2019

Postdoctoral Research Fellow

University of Connecticut

November 2014 - January 2017

PhD Research Intern

IBM India Research Lab

May 2011 - August 2011

Software Engineer

Texas Instruments India

July 2000 - June 2005

Education

Doctor of Philosophy (Ph.D)

Indian Institute of Technology - Bombay - India

July 2007 - December 2012

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Soumitra Pal, Tingyang Xu, Tianbao Yang, Sanguthevar Rajasekaran, Jinbo Bi(2020). Hybrid-DCA: A double asynchronous approach for stochastic dual coordinate ascent . Journal of Parallel and Distributed Computing. 143. p. 47--66. Elsevier {BV}

Soumitra Pal, Teresa M Przytycka, Alfonso Valencia(2020). Bioinformatics pipeline using JUDI: Just Do It! . Bioinformatics. 36. (8). p. 2572--2574. Oxford University Press ({OUP})

Soumitra Pal, Jan Hoinka, Teresa M Przytycka(2019). Co-SELECT reveals sequence non-specific contribution of DNA shape to transcription factor binding in vitro . Nucleic Acids Research. Oxford University Press ({OUP})

Soumitra Pal, Peng Xiao, Sanguthevar Rajasekaran(2017). Randomised sequential and parallel algorithms for efficient quorum planted motif search . International Journal of Data Mining and Bioinformatics. 18. (2). p. 105. Inderscience Publishers

Soumitra Pal, Peng Xiao, Sanguthevar Rajasekaran(2016). Efficient sequential and parallel algorithms for finding edit distance based motifs . BMC Genomics. 17. (S4). Springer Nature

Soumitra Pal, Abdullah-Al Mamun, Sanguthevar Rajasekaran(2016). KCMBT: ak-mer Counter based on Multiple Burst Trees . Bioinformatics. 32. (18). p. 2783--2790. Oxford University Press ({OUP})

Soumitra Pal, Ajit Diwan, Abhiram Ranade(2015). Fragmented coloring of proper interval and split graphs . Discrete Applied Mathematics. 193. p. 110--118. Elsevier {BV}

Soumitra Pal, Srinivas Aluru(2015). In search of perfect reads . BMC Bioinformatics. 16. (Suppl 17). p. S7. Springer Nature

Soumitra Pal, Abhiram Ranade(2012). Scheduling light-trails on WDM rings . Journal of Parallel and Distributed Computing. 72. (10). p. 1226--1236. Elsevier {BV}

OTHER

Soumitra Pal, Brian Oliver, Teresa M. Przytycka(2020). Modeling gene expression evolution with EvoGeneX uncovers differences in evolution of species, organs and sexes . Cold Spring Harbor Laboratory

Teresa M. Przytycka, Soumitra Pal(2019). Bioinformatics Pipeline using JUDI: Just Do It . Cold Spring Harbor Laboratory

Soumitra Pal, Jan Hoinka, Teresa M. Przytycka(2018). Co-SELECT reveals sequence non-specific contribution of DNA shape to transcription factor binding in vitro . Cold Spring Harbor Laboratory

Soumitra Pal, Sanguthevar Rajasekaran(2015). Improved Algorithms for Finding Edit Distance Based Motifs . Cold Spring Harbor Laboratory

CONFERENCE PAPER

Soumitra Pal, Sudipta Pathak, Sanguthevar Rajasekaran(2016). On Speeding-Up Parallel Jacobi Iterations for SVDs . 2016 IEEE 18th International Conference on High Performance Computing and Communications; IEEE 14th International Conference on Smart City; IEEE 2nd International Conference on Data Science and Systems (HPCC/SmartCity/DSS). {IEEE}

Soumitra Pal, Peng Xiao, Sanguthevar Rajasekaran(2016). qPMS10: A randomized algorithm for efficiently solving quorum Planted Motif Search problem . 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). {IEEE}

Soumitra Pal, Sanguthevar Rajasekaran(2015). Improved algorithms for finding edit distance based motifs . 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). {IEEE}

Soumitra Pal, Abdullah-Al Mamun, Sanguthevar Rajasekaran(2015). Efficient techniques for k-mer counting . 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). {IEEE}

Soumitra Pal, Srinivas Aluru(2014). In search of perfect reads . 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). {IEEE}

Soumitra Pal, Vijay Arya, T. S. Jayram, Shivkumar Kalyanaraman(2013). Inferring connectivity model from meter measurements in distribution networks . Proceedings of the the fourth international conference on Future energy systems - e-Energy '13. {ACM} Press