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Hire Dr. Soudabeh S.

Malaysia

USD 50 /hr

Bioinformatics & NGS Data Anallyst, RNA-seq, TCGA, Differential Expression, R & Python

Profile Summary

I am a bioinformatics and data analysis specialist with strong experience in RNA-seq and NGS data analysis, focusing on transcriptomics, differential gene expression, and integrative omics studies. I have worked on multiple academic and clinical research projects involving cancer genomics, reproductive biology, infertility, and endometriosis, including TCGA and GEO datasets. My expertise includes RNA-seq preprocessing, normalization, DEG analysis, functional enrichment (GO/KEGG), PPI network analysis, biomarker identification, and data visualization. I am proficient in R and Python and regularly use tools such as DESeq2, edgeR, clusterProfiler, maftools, survminer, Cytoscape, and related bioinformatics pipelines. In addition to data analysis, I have strong experience in scientific writing, manuscript preparation, and responding to reviewer comments for peer-reviewed journals. I am available for remote collaborations, short-term analysis tasks, and full bioinformatics support for research and clinical projects.

Subject Matter Expertise

• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Structural Bioinformatics

Services

• Writing

Writing Clinical Trial Documentation, Medical Writing, Technical Writing, Newswriting, General Proofreading & Editing

Work Experience

Shiraz University of Medical Sciences School of Medicine

October 2019 - Present

Assist.Prof.Dr

Shiraz University of Medical Sciences

August 2019 - Present

Education

PhD

Universiti Teknologi Malaysia

February 2010 - June 2014

Certifications

• Bioconductor for Genomic Data Science

  JOHNS HOPKINS/ Coursera

  https://www.coursera.org/account/accomplishments/verify/7V7UKCKHEHUQ

  June 2024 - Present

• Command Line Tools for Genomic Data Science

  JOHNS HOPKINS/ Coursera

  https://www.coursera.org/account/accomplishments/verify/YTUXY6JK992E

  February 2024 - Present

• Introduction to Genomics Technologia

  JOHNS HOPKINS/ Coursera

  https://www.coursera.org/account/accomplishments/verify/TLS87SX6NP9H

  November 2023 - Present

Publications

JOURNAL ARTICLE

Zahra Shiravani and Sana Atbaei and Bahia Namavar Jahromi and Mojgan Hajisafari Tafti and Shaghayegh Moradi Alamdarloo and Tahereh Poordast and Adel Noori and Sedighe Forouhari and Soudabeh Sabetian(2022). Comparing four different methods for the management of ectopic pregnancy: A cross-sectional study . International Journal of Reproductive BioMedicine (IJRM). p. 177--184. Knowledge E {DMCC}

Mohsen Ahmadi and Salar Pashangzadeh and Mahta Moraghebi and Soudabeh Sabetian and Mohammad Shekari and Fatemeh Eini and Ensieh Salehi and Pegah Mousavi(2022). Construction of circRNA‐miRNA‐mRNA network in the pathogenesis of recurrent implantation failure using integrated bioinformatics study . Journal of Cellular and Molecular Medicine. 26. (6). p. 1853--1864. Wiley

(2022). Clinical Guidelines on the Use of Assisted Reproductive Technology During Covid-19 Pandemic: A Minireview of the Current Literature . Journal of Health Sciences and Surveillance System.

Soudabeh Sabetian and Bahia Namavar Jahromi and Sina Vakili and Sedighe Forouhari and Shohreh Alipour(2021). The Effect of Oral Vitamin E on Semen Parameters and IVF Outcome: A Double-Blinded Randomized Placebo-Controlled Clinical Trial . BioMed Research International. 2021. p. 1--6. Hindawi Limited

Soudabeh Sabetian and Bahia Namavar Jahromi and Sina Vakili and Sedighe Forouhari and Shohreh Alipour(2021). The Effect of Oral Vitamin E on Semen Parameters and IVF Outcome: A Double-Blinded Randomized Placebo-Controlled Clinical Trial . BioMed Research International. 2021. p. 1--6. Hindawi Limited

Bahia Namavar Jahromi and Niloofar Borzou and Mohammad Ebrahim Parsanezhad and Zahra Anvar and Parvin Ghaemmaghami and Soudabeh Sabetian(2021). Associations of insulin resistance, sex hormone-binding globulin, triglyceride, and hormonal profiles in polycystic ovary syndrome: A cross-sectional study . International Journal of Reproductive BioMedicine (IJRM). Knowledge E

Soudabeh Sabetian and Isabella Castiglioni and Bahia Namavar Jahromi and Pegah Mousavi and Claudia Cava(2021). In Silico Identification of miRNA–lncRNA Interactions in Male Reproductive Disorder Associated with COVID-19 Infection . Cells. 10. (6). p. 1480. {MDPI} {AG}

Claudia Cava and Soudabeh Sabetian and Isabella Castiglioni(2021). Patient-Specific Network for Personalized Breast Cancer Therapy with Multi-Omics Data . Entropy. 23. (2). p. 225. {MDPI} {AG}

Soudabeh Sabetian and and Mohd Shahir Shamsir(2019). Computer aided analysis of disease linked protein networks . Bioinformation. 15. (7). p. 513--522. Biomedical Informatics

Zarei, M., Nezafat, N., Rahbar, M.R., Negahdaripour, M., Sabetian, S., Morowvat, M.H., Ghasemi, Y.(2019). Decreasing the immunogenicity of arginine deiminase enzyme via structure‐based computational analysis . Journal of Biomolecular Structure and Dynamics. 37. (2). p. 523-536.

Sabetian, S., Nezafat, N., Dorosti, H., Zarei, M., Ghasemi, Y.(2019). Exploring dengue proteome to design an effective epitope-based vaccine against dengue virus . Journal of Biomolecular Structure and Dynamics. 37. (10). p. 2546-2563.

Negahdaripour, M., Owji, H., Eslami, M., Zamani, M., Vakili, B., Sabetian, S., Nezafat, N., Ghasemi, Y.(2019). Selected application of peptide molecules as pharmaceutical agents and in cosmeceuticals . Expert Opinion on Biological Therapy. 19. (12). p. 1275-1287.

Sabetian, S., Shamsir, M.S.(2017). Deficiency in Sperm–Egg Protein Interaction as a Major Cause of Fertilization Failure . Journal of Membrane Biology. 250. (2). p. 133-144.

Sabetian, S., Shamsir, M.S.(2016). Systematic analysis of protein interaction network associated with azoospermia . International Journal of Molecular Sciences. 17. (11).

Sabetian, S., Shamsir, M.S.(2015). Identification of putative drug targets for human sperm-egg interaction defect using protein network approach . BMC Systems Biology. 9. (1).

Sabetian, S., Shamsir, M.S., Naser, M.A.(2014). Functional features and protein network of human sperm-egg interaction . Systems Biology in Reproductive Medicine. 60. (6). p. 329-337.

Sabetian, S., Shamsir, M.S., Naser, M.A., Mienda, B.S.(2014). Gene expression profiles of spermatozoa in teratozoospermia . Research Journal of Pharmaceutical, Biological and Chemical Sciences. 5. (6). p. 818-823.

Soudabeh Sabetian Fard Jahromi and Mohd Shahir Shamsir(2013). Construction and Analysis of the Cell Surface’s Protein Network for Human Sperm-Egg Interaction . ISRN Bioinformatics. 2013. p. 1--8. Hindawi Limited

Soudabeh Sabetian Fard Jahromi and Mohd Shahir Shamsir(2013). Construction and Analysis of the Cell Surface’s Protein Network for Human Sperm-Egg Interaction . ISRN Bioinformatics. 2013. p. 1--8. Hindawi Limited

(2010). Comparing Seminal Plasma Biomarkers between Normospermic and Azoospermic Men . Journal of reproduction & infertility.