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Hire Dr. Shlomo B.

United States

USD 50 /hr

Bioinformatics Scientist, PhD | NGS & Multi-Omics Specialist | Single-Cell RNA-Seq, ATAC-Seq | Harvard fellow |

Profile Summary

I am a data-driven scientist and bioinformatics expert with a PhD in Bioengineering and postdoctoral training at Harvard University. My core expertise includes single-cell RNA-seq, ATAC-seq, and integrative multi-omics analysis, with deep experience in stem cell biology, and regenerative medicine. I’ve developed custom computational pipelines and visualization tools using Python, R, MATLAB, and cloud-based systems. My work has been published in Cell, Nature Communications, PNAS, Cell Reports, and more. I specialize in uncovering cell fate decisions, transcriptional regulation, and cellular heterogeneity using high-dimensional datasets. Whether you need advanced single-cell analysis, end-to-end NGS workflows, big data analysis, image analysis or collaborative consultation, I bring academic rigor and translational insight to every project.

Subject Matter Expertise

• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Microarrays
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Proteomics
• ☆ Metabolomics
• ☆ Genomics
• ☆ Chromatin
• ☆ Epigenetics
• ☆ PCR
• ☆ Molecular Cloning
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Data Analysis
• ☆ Image Processing
• ☆ Computer Simulation/Computational Modeling
• ☆ Algorithm Design
• ☆ Data Processing
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Text Mining & Analytics
• ☆ Data Cleaning
• ☆ Pattern Recognition
• ☆ Computer Vision
• ☆ Biomolecular Engineering
• ☆ Gene Synthesis
• ☆ Genetic Engineering
• ☆ Gene Delivery
• ☆ Population Genetics

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Meta-Research, Fact Checking, Gap Analysis, Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Image Processing, Image Analysis, Data Visualization, Big Data Analytics, Data Mining

Work Experience

Postdoctroral Researcher

Harvard University

January 2021 - Present

Education

PhD Bioengineering

The Hebrew University

January 2014 - July 2021

BSc Biophysics

The Hebrew University

January 2010 - January 2014

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Xi Wang, Brielle S, Kenty-Ryu J, Korover N, Bavli D, Pop R, Doug Melton (2025). Improving cellular fitness of human stem cell-derived islets under hypoxia . Nature communications.

Shlomi Brielle, Danny Bavli, Alex Motzik, Yoav Kan-Tor, Xue Sun, Chen Kozulin, Batia Avni, Oren Ram, Amnon Buxboim(2021). Delineating the heterogeneity of matrix-directed differentiation toward soft and stiff tissue lineages via single-cell profiling . Proceedings of the National Academy of Sciences. 118. (19). Proceedings of the National Academy of Sciences

Bavli, Danny and Sun, Xue and Kozulin, Chen and Ennis, Dena and Motzik, Alex and Biran, Alva and Brielle, Shlomi and Alajem, Adi and Meshorer, Eran and Buxboim, Amnon and others(2021). CloneSeq: A highly sensitive analysis platform for the characterization of 3D-cultured single-cell-derived clones. Developmental Cell. Cell Press

Brielle, Shlomi and Bavli, Danny and Motzik, Alex and Kan-Tor, Yoav and Sun, Xue and Kozulin, Chen and Avni, Batia and Ram, Oren and Buxboim, Amnon(2021). Delineating the heterogeneity of matrix-directed differentiation toward soft and stiff tissue lineages via single-cell profiling. Proceedings of the National Academy of Sciences. 118. (19). National Academy of Sciences

Razin, Talya and Melamed-Book, Naomi and Argaman, Jasmin and Galin, Iris and Lowy, Yosef and Anuka, Eli and Naftali-Shani, Nili and Kandel-Kfir, Michal and Garfinkel, Benjamin P and Brielle, Shlomi and others(2021). Interleukin-1$α$ dependent survival of cardiac fibroblasts is associated with StAR/STARD1 expression and improved cardiac remodeling and function after myocardial infarction. Journal of Molecular and Cellular Cardiology. 155. p. 125--137. Academic Press

Bavli, Danny and Sun, Xue and Kozulin, Chen and Ennis, Dena and Motzik, Alex and Biran, Alva and Brielle, Shlomi and Alajem, Adi and Meshorer, Eran and Buxboim, Amnon and others(2020). CloneSeq: A Highly Sensitive Single-cell Analysis Platform for Comprehensive Characterization of Cells from 3D Culture. bioRxiv. Cold Spring Harbor Laboratory

Pattabiraman, Sundararaghavan and Azad, Gajendra Kumar and Amen, Triana and Brielle, Shlomi and Park, Jung Eun and Sze, Siu Kwan and Meshorer, Eran and Kaganovich, Daniel(2020). Vimentin protects differentiating stem cells from stress. Scientific reports. 10. (1). p. 1--15. Nature Publishing Group

Brielle, Shlomi and Kaganovich, Daniel(2018). Mitochondrial dysfunction in protein conformational disorders. Journal of genetics. 97. (3). p. 703--713. Springer India

Sadovsky*, Rotem Gura and Brielle*, Shlomi and Kaganovich, Daniel and England, Jeremy L(2017). Measurement of rapid protein diffusion in the cytoplasm by photo-converted intensity profile expansion. Cell reports. 18. (11). p. 2795--2806. Cell Press

Brielle, Shlomi and Gura, Rotem and Kaganovich, Daniel(2015). Imaging stress. Cell Stress and Chaperones. 20. (6). p. 867--874. Springer Netherlands

CONFERENCE PAPER

Shlomi Brielle, Danny Bavli, Alex Motzik, Yoav Kan-Tor, Batia Avni, Oren Ram, Amnon Buxboim(2020). Matrix elasticity a fork in the road for cell fate decisions. 28th International Conference on Intelligent Systems for Molecular Biology (ISMB) 2020. p. https--f1000research.