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Profile Details
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Hire Dr. Sayoni D.
United Kingdom
Profile Summary
Subject Matter Expertise
Services
Work Experience

Senior Bioinformatician

PrecisionLife Ltd.

April 2019 - Present

Post-doctoral Research Associate

University College London

July 2016 - Present

Education

PhD in Structural Molecular and Computational Biology

University College London

September 2012 - June 2016

M.S (Research) in Biochemical Engineering and Biotechnology

IIT Delhi

August 2010 - June 2012

B.Tech Biotecnology

West Bengal University of Technology

August 2006 - June 2010

Certifications
  • Certification details not provided.
Publications
JOURNAL ARTICLE
(2019). CATH: Expanding the horizons of structure-based functional annotations for genome sequences . Nucleic Acids Research. 47. (D1). p. D280-D284.
Tsuchiya, Y., Zhyvoloup, A., Baković, J., Thomas, N., Yu, B.Y.K., Tsuchiya, Y., Zhyvoloup, A., Baković, J., Thomas, N., Yu, B.Y.K., et al.(2018). Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells . Biochemical Journal. 475. (11). p. 1909-1937.
Das, S., Orengo, C., Das, S., Orengo, C.(2018). Choosing the Best Enzyme Complex Structure Made Easy . Structure. 26. (4). p. 528-530.
Dawson, N.L., Lewis, T.E., Das, S., Lees, J.G., Lee, D., Ashford, P., Orengo, C.A., Sillitoe, I.(2017). CATH: An expanded resource to predict protein function through structure and sequence . Nucleic Acids Research. 45. (D1). p. D289-D295.
(2017). An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences . Acta Crystallographica Section D: Structural Biology. 73. (8). p. 628-640.
Das, S., Orengo, C.A.(2016). Protein function annotation using protein domain family resources . Methods. 93. p. 24-34.
White, B., White, B., Fatima, V., White, B., Fatima, V., Fatima, N., Das, S., Rahman, F., Hassan, M.(2016). Highlights of the 2 <sup>nd</sup> Bioinformatics Student Symposium by ISCB RSG-UK [version 1; referees: Not peer reviewed] . F1000Research. 5.
Lee, D., Lee, D., Lee, D., Das, S., Dawson, N.L., Dobrijevic, D., Ward, J., Orengo, C.(2016). Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases . PLoS Computational Biology. 12. (6).
Lam, S.D., Dawson, N.L., Lam, S.D., Dawson, N.L., Das, S., Sillitoe, I., Ashford, P., Lee, D., Lehtinen, S., Orengo, C.A., et al.(2016). Gene3D: Expanding the utility of domain assignments . Nucleic Acids Research. 44. (D1). p. D404-D409.
(2016). An expanded evaluation of protein function prediction methods shows an improvement in accuracy . Genome Biology. 17. (1).
(2015). Diversity in protein domain superfamilies . Current Opinion in Genetics and Development. 35. p. 40-49.
Das, S., Das, S., Sillitoe, I., Lee, D., Lees, J.G., Dawson, N.L., Ward, J., Orengo, C.A.(2015). CATH FunFHMMer web server: Protein functional annotations using functional family assignments . Nucleic Acids Research. 43. (W1). p. W148-W153.
(2015). CATH: Comprehensive structural and functional annotations for genome sequences . Nucleic Acids Research. 43. (D1). p. D376-D381.
(2015). Functional classification of CATH superfamilies: A domain-based approach for protein function annotation . Bioinformatics. 31. (21). p. 3460-3467.
Hassan, M., Rahman, F., Farmer, R., Hassan, M., Rahman, F., Farmer, R., Das, S., Vayani, F.(2015). Highlights of the 1st Student Symposium of the ISCB RSG UK . F1000Research. 4.
Lees, J.G., Lee, D., Studer, R.A., Dawson, N.L., Sillitoe, I., Das, S., Yeats, C., Dessailly, B.H., Rentzsch, R., Orengo, C.A.(2014). Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis . Nucleic Acids Research. 42. (D1).
BOOK CHAPTER
(2017). Function diversity within folds and superfamilies . From Protein Structure to Function with Bioinformatics: Second Edition. p. 295-325.
Das, S., Khan, I., Kihara, D., Orengo, C.(2016). Exploring Structure-Function Relationships in Moonlighting Proteins . Moonlighting Proteins: Novel Virulence Factors in Bacterial Infections. p. 21-43.