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Hire Dr. Sandeep A.

United Kingdom

USD 50 /hr

Bioinformatician | Specialisim in functional & network biology

Profile Summary

I'm a career Bioinformatician with a decade long experience in the field. From my undergrad, postgrad and doctoral studies to my postdoctoral stints, I've applied various bioinformatics methodologies in multitude of biological domains spanning from virus-host interactions to neurodegenerative diseases to knowledge networks to plant 'omics based studies. This experience has allowed me to capture different perspectives of a dataset generate with (forward modelling) or without (inverse modelling, data-driven) approach, and extract meaningful insights.

Subject Matter Expertise

• ★ Social Network Analysis
• ★ Data Visualization
• ★ Bioinformatics
• ☆ Data Analysis

Services

• Research
• Consulting
• Data & AI

Research Market Research

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization, Big Data Analytics, Data Cleaning, Data Processing, Data Insights

Work Experience

Senior Bioinformatician

Eli Lilly

August 2022 - Present

Research Associate

University of Liverpool

December 2020 - Present

Senior Bioinformatician

Cancer Research UK Manchester Institute

February 2020 - September 2020

Bioinformatics Scientist

Rothamsted Research

January 2019 - January 2020

Postdoctoral Research Associate

University of Sheffield

September 2015 - December 2018

Bioinformatics Scientist

Blackfield AG

January 2014 - December 2014

Research Associate

Technical University Dresden

May 2012 - March 2013

Associate Software Engineer

Persistent Systems Ltd

May 2008 - April 2009

Education

Dr. rer. nat (HGS MathComp)

University of Heidelberg Bioquant

May 2009 - July 2014

M.Sc (Bioinformatics Centre)

University of Pune

July 2005 - May 2007

B.Sc (Biotechnology)

University of Mumbai

June 2002 - May 2005

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Whole-genome sequencing reveals new Alzheimer’s disease-associated rare variants in loci related to synaptic function and neuronal development Dmitry Prokopenko, Sarah L. Morgan, Kristina Mullin, Oliver Hofmann, Brad Chapman, Rory Kirchner, Sandeep Amberkar, Inken Wohlers, Christoph Lange, Winston Hide, Lars Bertram, Rudolph E. Tanzi medRxiv 2020.11.03.20225540; doi: https://doi.org/10.1101/2020.11.03.20225540 .

(2020). Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models . Cell Reports.

Hassani-Pak, Keywan and Singh, Ajit and Brandizi, Marco and Hearnshaw, Joseph and Phillips, Andrew L and Doonan, John H and Rawlings, Christopher(2020). KnetMiner - Intelligent search and visualisation of connected data to explain complex traits and diseases . []. Cold Spring Harbor Laboratory

Amberkar SS, Kaderali L, Algorithms for molecular biology : AMB, 2015, vol. 10, pp. 6, 2015 .

Levtov N, Amberkar S, Frenkel ZM, Kaderali L, Volkovich Z, Journal of computational biology : a journal of computational molecular cell biology, 2014, vol. 21, no. 2, pp. 173-183, 2014 .

Amberkar S, Kiani NA, Bartenschlager R, Alvisi G, Kaderali L, World journal of virology, 2013, vol. 2, no. 2, pp. 18-31, 2013 .

Poschke H, Dees M, Chang M, Amberkar S, Kaderali L, Rothstein R, Luke B, PLoS genetics, 2012, vol. 8, no. 9, pp. e1002960, 2012 .