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United States

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Genomic Data Scientist | 20+ Years Genomic Research | Translating Bioinformatics Insights into Precision Medicine

Profile Summary

With over two decades of experience in bioinformatics, I am a seasoned data scientist specializing in genomic, epigenomic, and transcriptomic analyses. I leverage expertise across: - NGS analysis pipeline development - Advanced variant detection and annotation - Whole genome association studies - Cross-species comparative genomics - De novo genome assembly - DNA methylation and histone modification analysis - Quantification of protein-coding gene and miRNA expression

Subject Matter Expertise

• ☆ Molecular Biology
• ☆ Omics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ Epigenetics
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization, Big Data Analytics, Data Cleaning

Work Experience

Baylor College of Medicine

- Present

ASSISTANT PROFESSOR

Baylor College of Medicine

December 2008 - Present

Bioinformatics Consultant

Fresh Wind Biotechnologies

June 2021 - August 2022

Web developer

Kinetic Corporation

January 2000 - April 2002

Education

PhD

Baylor College of Medicine

August 2002 - December 2007

MA

Kent State University

August 1992 - May 1996

BA

Florida State University

August 1987 - August 1990

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

R. Alan Harris, Jan M. McAllister, Jerome F. Strauss, III (2025). Multimodal Integration of Genomic Data Reveals Regulatory Mechanisms at the Polycystic Ovary Syndrome (PCOS)-Associated 12q13.2 Locus . International Journal of Molecular Sciences.

R. Alan Harris, Jan M. McAllister, Jerome F. Strauss (2025). Multimodal Integration of Genomic Data Reveals Regulatory Mechanisms at the Polycystic Ovary Syndrome (PCOS)-Associated 12q13.2 Locus . International Journal of Molecular Sciences.

Christian Roos, Lakshmi Seshadri, Liye Zhang, R. Alan Harris, Muthuswamy Raveendran, Sebastien H. Cuadros Espinoza, Lukas F. K. Kuderna, Shivakumara Manu, Govindhaswamy Umapathy, Jean P. Boubli, et al. (2025). Genomic basis of non-human-primate diversity and adaptation . Nature Reviews Biodiversity.

Roos, Christian, Seshadri, Lakshmi, Zhang, Liye, Harris, R Alan, Raveendran, Muthuswamy, Cuadros Espinoza, Sebastien H, Kuderna, Lukas FK, Manu, Shivakumara, Umapathy, Govindhaswamy, Boubli, Jean P, et al.(2025). Genomic basis of non-human-primate diversity and adaptation . Nature Reviews Biodiversity. p. 1--18. Nature Publishing Group UK London

Orkin, Joseph D, Kuderna, Lukas FK, Hermosilla-Albala, Núria, Fontsere, Claudia, Aylward, Megan L, Janiak, Mareike C, Andriaholinirina, Nicole, Balaresque, Patricia, Blair, Mary E, Fausser, Jean-Luc, et al.(2025). Ecological and anthropogenic effects on the genomic diversity of lemurs in Madagascar. Nature Ecology & Evolution. 9. (1). p. 42--56. Nature Publishing Group UK London

Ramasamy, Ramesh, Raveendran, Muthuswamy, Harris, R Alan, Le, Hiep D, Mure, Ludovic S, Benegiamo, Giorgia, Dkhissi-Benyahya, Ouria, Cooper, Howard, Rogers, Jeffrey, Panda, Satchidananda(2025). Genome-wide allele-specific expression in multi-tissue samples from healthy male baboons reveals the transcriptional complexity of mammals. Cell Genomics. 5. (5). Elsevier

Watson, Ashleigh, Harris, R Alan, Engevik, Amy C, Oezguen, Numan, Nicholson, Maribeth R, Dooley, Sarah, Stubler, Rachel, Satter, Lisa Forbes, Karam, Lina B, Kellermayer, Richard(2025). MYO5B and the polygenic landscape of very early-onset inflammatory bowel disease in an ethnically diverse population. Inflammatory Bowel Diseases. 31. (1). p. 189--199. Oxford University Press US

Wang, Richard J, Peña-Garćıa, Yadira, Raveendran, Muthuswamy, Harris, R Alan, Nguyen, Thuy-Trang, Gingras, Marie-Claude, Wu, Yifan, Perez, Lesette, Yoder, Anne D, Simmons, Joe H, et al.(2025). Unprecedented female mutation bias in the aye-aye, a highly unusual lemur from Madagascar. PLoS biology. 23. (2). p. e3003015. Public Library of Science San Francisco, CA USA

Jun Wang, Meng Wang, Ala Moshiri, R. Alan Harris, Muthuswamy Raveendran, Tracy Nguyen, Soohyun Kim, Laura Young, Keqing Wang, Roger Wiseman, et al. (2024). Genetic diversity of 1,845 rhesus macaques improves genetic variation interpretation and identifies disease models . Nature Communications.

Trent M Prall, Julie A Karl, Joshua M Varghese, David A Baker, Nicholas R Minor, Muthuswamy Raveendran, R Alan Harris, Jeffery Rogers, Roger W Wiseman, David H O’Connor (2024). Complete Genomic Assembly of Mauritian Cynomolgus Macaque Killer Ig-like Receptor and Natural Killer Group 2 Haplotypes . The Journal of Immunology.

Prall, Trent M, Karl, Julie A, Varghese, Joshua M, Baker, David A, Minor, Nicholas R, Raveendran, Muthuswamy, Harris, R Alan, Rogers, Jeffery, Wiseman, Roger W, O’Connor, David H(2024). Complete Genomic Assembly of Mauritian Cynomolgus Macaque Killer Ig-like Receptor and Natural Killer Group 2 Haplotypes . The Journal of Immunology.

Patel, Halee, Harris, R Alan, Qian, Justin H, Oezguen, Numan, Watson, Ashleigh, Szigeti, Reka G, Cho, Stanley, Ruan, Wenly, Britto, Savini, Opekun, Antone, et al.(2024). Genetic Variation between Small Bowel and Colon Predominant Crohn Disease. Cellular and Molecular Gastroenterology and Hepatology. Elsevier

Wang, Qiankun, Clark, Kolin M, Tiwari, Ritudhwaj, Raju, Nagarajan, Tharp, Gregory K, Rogers, Jeffrey, Harris, R Alan, Raveendran, Muthuswamy, Bosinger, Steven E, Burdo, Tricia H, et al.(2024). The CARD8 inflammasome dictates HIV/SIV pathogenesis and disease progression. Cell. 187. (5). p. 1223--1237. Elsevier

Peña-Garcia, Yadira, Wang, Richard J, Raveendran, Muthuswamy, Harris, R Alan, Samollow, Paul B, Rogers, Jeffrey, Hahn, Matthew W(2024). Low mutation rate but high male-bias in the germline of a short-lived opossum. bioRxiv. p. 2024--12. Cold Spring Harbor Laboratory

Wang, Richard J, Peña-Garćıa, Yadira, Muthuswamy, Raveendran, Harris, R Alan, Nguyen, Thuy-Trang, Gingras, Marie-Claude, Wu, Yifan, Perez, Lesette, Yoder, Anne D, Simmons, Joe H, et al.(2024). Unprecedented female mutation bias in aye-ayes. bioRxiv. p. 2024--12. Cold Spring Harbor Laboratory

Wang, Jun, Wang, Meng, Moshiri, Ala, Harris, R Alan, Raveendran, Muthuswamy, Nguyen, Tracy, Kim, Soohyun, Young, Laura, Wang, Keqing, Wiseman, Roger, et al.(2024). Genetic diversity of 1,845 rhesus macaques improves genetic variation interpretation and identifies disease models . Nature Communications. 15. (1). p. 1--12. Nature Publishing Group

R. Alan Harris, Muthuswamy Raveendran, Wes Warren, Hillier W. LaDeana, Chad Tomlinson, Tina Graves-Lindsay, Richard E. Green, Jenna K. Schmidt, Julia C. Colwell, Allison T. Makulec, et al. (2023). Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (Callithrix jacchus) . Genes.

R. Alan Harris, Muthuswamy Raveendran, Wes Warren, Hillier W. LaDeana, Chad Tomlinson, Tina Graves-Lindsay, Richard E. Green, Jenna K. Schmidt, Julia C. Colwell, Allison T. Makulec, et al. (2023). Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (<i>Callithrix jacchus</i>) . Genes.

R. Alan Harris, Jan M. McAllister, Jerome F. Strauss, III (2023). Single-Cell RNA-Seq Identifies Pathways and Genes Contributing to the Hyperandrogenemia Associated with Polycystic Ovary Syndrome . International Journal of Molecular Sciences.

Erik F. S&#248;rensen, R. Alan Harris, Liye Zhang, Muthuswamy Raveendran, Lukas F. K. Kuderna, Jerilyn A. Walker, Jessica M. Storer, Martin Kuhlwilm, Claudia Fontsere, Lakshmi Seshadri, et al. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons . Science.

R. Alan Harris, Jan M. McAllister, Jerome F. Strauss (2023). Single-Cell RNA-Seq Identifies Pathways and Genes Contributing to the Hyperandrogenemia Associated with Polycystic Ovary Syndrome . International Journal of Molecular Sciences.

Harris, R Alan, McAllister, Jan M, Strauss III, Jerome F(2023). Single-Cell RNA-Seq Identifies Pathways and Genes Contributing to the Hyperandrogenemia Associated with Polycystic Ovary Syndrome . International Journal of Molecular Sciences. 24. (13). p. 10611. MDPI

S&#248;rensen, Erik F, Harris, R Alan, Zhang, Liye, Raveendran, Muthuswamy, Kuderna, Lukas FK, Walker, Jerilyn A, Storer, Jessica M, Kuhlwilm, Martin, Fontsere, Claudia, Seshadri, Lakshmi, et al.(2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons . Science. 380. (6648). p. eabn8153. American Association for the Advancement of Science

Kuderna, Lukas FK, Gao, Hong, Janiak, Mareike C, Kuhlwilm, Martin, Orkin, Joseph D, Bataillon, Thomas, Manu, Shivakumara, Valenzuela, Alejandro, Bergman, Juraj, Rousselle, Marjolaine, et al.(2023). A global catalog of whole-genome diversity from 233 primate species. Science. 380. (6648). p. 906--913. American Association for the Advancement of Science

Prall, Trent M, Karl, Julie A, Varghese, Joshua M, Baker, David A, Minor, Nicholas R, Raveendran, Muthuswamy, Harris, R Alan, Rogers, Jeffrey, Wiseman, Roger W, O&#39;Connor, David H(2023). Complete genomic assembly of Mauritian cynomolgus macaque killer immunoglobulin-like receptor and natural killer group 2 haplotypes. bioRxiv. p. 2023--12. Cold Spring Harbor Laboratory

Harris, R Alan, Bush, Allyson H, Eagar, Todd N, Qian, Justin, Greenwood, Michael P, Opekun, Antone R, Baldassano, Robert, Guthery, Stephen L, Noe, Joshua D, Otley, Anthony, et al.(2023). Exome Sequencing Implicates DGKZ, ESRRA, and GXYLT1 for Modulating Granuloma Formation in Crohn's Disease. Journal of Pediatric Gastroenterology and Nutrition.

Kuderna, Lukas, Ullirsch, Jacob, Rashid, Sabrina, Ameen, Mo, Sundaram, Laksshman, Hickey, Glenn, Cox, Anthony, Gao, Hong, Kumar, Arvind, Aguet, Fran&#231;ois, et al.(2023). Identification of constrained sequence elements across 243 primate genomes. Nature. Nature Publishing Group

Paulin, Luis F, Raveendran, Muthuswamy, Harris, R Alan, Rogers, Jeffrey, von Haeseler, Arndt, Sedlazeck, Fritz J(2023). SVhound: detection of regions that harbor yet undetected structural variation. BMC Bioinformatics. 24. (1). p. 1--20. BioMed Central

Gao, Hong, Hamp, Tobias, Ede, Jeffrey, Schraiber, Joshua G, McRae, Jeremy, Singer-Berk, Moriel, Yang, Yanshen, Dietrich, Anastasia SD, Fiziev, Petko P, Kuderna, Lukas FK, et al.(2023). The landscape of tolerated genetic variation in humans and primates. Science. 380. (6648). p. eabn8153. American Association for the Advancement of Science

Harris, R Alan, Raveendran, Muthuswamy, Warren, Wes, LaDeana, Hillier W, Tomlinson, Chad, Graves-Lindsay, Tina, Green, Richard E, Schmidt, Jenna K, Colwell, Julia C, Makulec, Allison T, et al.(2023). Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (Callithrix jacchus) . Genes. 14. (12). p. 2185. MDPI

Harris, R Alan, Archer, Kellie J, Goodarzi, Mark O, York, Timothy P, Rogers, Jeffrey, Dunaif, Andrea, McAllister, Jan M, Strauss III, Jerome F(2023). Loci on chromosome 12q13. 2 encompassing ERBB3, PA2G4 and RAB5B are associated with polycystic ovary syndrome . Gene. 852. p. 147062. Elsevier

Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears <head> <META HTTP-EQUIV="Refresh" CONTENT="0;URL=/servlet/useragent"> </head> . Genome Biology and Evolution.

Richard J Wang, Muthuswamy Raveendran, R Alan Harris, William J Murphy, Leslie A Lyons, Jeffrey Rogers, Matthew W Hahn, Kelley Harris (2022). De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations . Molecular Biology and Evolution.

R Alan Harris, Muthuswamy Raveendran, Dustin T Lyfoung, Fritz J Sedlazeck, Medhat Mahmoud, Trent M Prall, Julie A Karl, Harshavardhan Doddapaneni, Qingchang Meng, Yi Han, et al. (2022). Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus . GigaScience.

Nejla Ozirmak Lermi, Carlos Alvarez, Stanton B. Gray, Charles M. Bowen, Laura Reyes-Uribe, Beth K. Dray, Nan Deng, R. Alan Harris, Muthuswamy Raveendran, Fernando Benavides, et al.(2022). Comparative molecular genomic analyses of a spontaneous rhesus macaque model of mismatch repair-deficient colorectal cancer . PLOS Genetics. 18. (4). p. e1010163. Public Library of Science ({PLoS})

Ozirmak Lermi, Nejla, Gray, Stanton B, Bowen, Charles M, Reyes-Uribe, Laura, Dray, Beth K, Deng, Nan, Harris, R Alan, Raveendran, Muthuswamy, Benavides, Fernando, Hodo, Carolyn L, et al.(2022). Comparative molecular genomic analyses of a spontaneous rhesus macaque model of mismatch repair-deficient colorectal cancer . PLoS genetics. 18. (4). p. e1010163. Public Library of Science San Francisco, CA USA

Casanova, M Isabel, Chen, Rui, Garzel, Laura M, Olstad, Katherine J, Kim, Soohyun, Harris, Ronald Alan, Li, Yumei, Raveendran, Muthuswamy, Liang, Qingnan, Wang, Jun, et al.(2022). Clinical presentation, treatment, and genetic and histopathological analysis of juvenile cataracts and secondary glaucoma in a rhesus macaque (Macaca mulatta). Journal of medical primatology. 51. (2). p. 119--123.

Wang, Richard J, Raveendran, Muthuswamy, Harris, R Alan, Murphy, William J, Lyons, Leslie A, Rogers, Jeffrey, Hahn, Matthew W(2022). De novo mutations in domestic cat are consistent with an effect of reproductive longevity on both the rate and spectrum of mutations . Molecular Biology and Evolution. 39. (7). p. msac147. Oxford University Press

Wang, Richard J, Pe&#241;a-Garcia, Yadira, Bibby, Madeleine G, Raveendran, Muthuswamy, Harris, R Alan, Jansen, Heiko T, Robbins, Charles T, Rogers, Jeffrey, Kelley, Joanna L, Hahn, Matthew W(2022). Examining the effects of hibernation on germline mutation rates in grizzly bears . Genome Biology and Evolution.

Harris, R Alan, Raveendran, Muthuswamy, Lyfoung, Dustin T, Sedlazeck, Fritz J, Mahmoud, Medhat, Prall, Trent M, Karl, Julie A, Doddapaneni, Harshavardhan, Meng, Qingchang, Han, Yi, et al.(2022). Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus . GigaScience. 11. Oxford Academic

Gunter, Chris, Harris, R Alan, Kovacs-Balint, Zsofia, Raveendran, Muthuswamy, Michopoulos, Vasiliki, Bachevalier, Jocelyne, Raper, Jessica, Sanchez, Mar M, Rogers, Jeffrey(2022). Heritability of social behavioral phenotypes and preliminary associations with autism spectrum disorder risk genes in rhesus macaques: A whole exome sequencing study. Autism Research. 15. (3). p. 447--463. John Wiley \& Sons, Inc. Hoboken, USA

Wang, Richard J, Pena-Garcia, Yadira, Bibby, Madeleine, Raveendran, Muthuswamy, Harris, R Alan, Jansen, Heiko T, Robbins, Charles T, Rogers, Jeffrey, Kelley, Joanna L, Hahn, Matthew W(2022). Hibernation shows no apparent effect on germline mutation rates in grizzly bears. bioRxiv. Cold Spring Harbor Laboratory

Andrew S. Fox, Ronald A. Harris, Laura Del Rosso, Muthuswamy Raveendran, Shawn Kamboj, Erin L. Kinnally, John P. Capitanio, Jeffrey Rogers (2021). Infant inhibited temperament in primates predicts adult behavior, is heritable, and is associated with anxiety-relevant genetic variation . Molecular Psychiatry.

Thomas T. Tapmeier, Nilufer Rahmioglu, Jianghai Lin, Bianca De Leo, Maik Obendorf, Muthuswamy Raveendran, Oliver M. Fischer, Cemsel Bafligil, Manman Guo, Ronald Alan Harris, et al.(2021). Neuropeptide S receptor 1 is a nonhormonal treatment target in endometriosis . Science Translational Medicine. 13. (608). American Association for the Advancement of Science ({AAAS})

Lauren E. Petty, Kathrine Phillippi‐Falkenstein, H. Michael Kubisch, Muthuswamy Raveendran, R. Alan Harris, Eric J. Vallender, Chad D. Huff, Rudolf P. Bohm, Jeffrey Rogers, Jennifer E. Below (2021). Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta) . Molecular Ecology Resources.

Elaine E. Guevara, Timothy H. Webster, Richard R. Lawler, Brenda J. Bradley, Lydia K. Greene, Jeannin Ranaivonasy, Joelisoa Ratsirarson, R. Alan Harris, Yue Liu, Shwetha Murali, et al.(2021). Comparative genomic analysis of sifakas ( Propithecus ) reveals selection for folivory and high heterozygosity despite endangered status . Science Advances. 7. (17). American Association for the Advancement of Science ({AAAS})

Guevara, Elaine E, Webster, Timothy H, Lawler, Richard R, Bradley, Brenda J, Greene, Lydia K, Ranaivonasy, Jeannin, Ratsirarson, Joelisoa, Harris, R Alan, Liu, Yue, Murali, Shwetha, et al.(2021). Comparative genomic analysis of sifakas (Propithecus) reveals selection for folivory and high heterozygosity despite endangered status . Science Advances. 7. (17). p. eabd2274. American Association for the Advancement of Science

Patel, Halee, Harris, R Alan, Qian, Justin, Britto, Savini, Opekun, Antone, Kellermayer, Richard(2021). GENETIC POLYMOPRHISMS MAY DIFFERENTIATE BETWEEN COMPLICATED PEDIATRIC SMALL BOWEL VERSUS COLONIC CROHN’S DISEASE. Inflammatory Bowel Diseases. 27. (Supplement\_1). p. S30--S30. Oxford University Press US

Smith, Lisa M, Ladner, Jason T, Hodara, Vida L, Parodi, Laura M, Harris, R Alan, Callery, Jessica E, Lai, Zhao, Zou, Yi, Raveedran, Muthuswamy, Rogers, Jeffrey, et al.(2021). Multiplexed Simian Immunodeficiency Virus-Specific Paired RNA-Guided Cas9 Nickases Inactivate Proviral DNA. Journal of Virology. 95. (23). p. e00882--21. American Society for Microbiology 1752 N St., NW, Washington, DC

Thomas, Gregg WC, Wang, Richard J, Nguyen, Jelena, Alan Harris, R, Raveendran, Muthuswamy, Rogers, Jeffrey, Hahn, Matthew W(2021). Origins and long-term patterns of copy-number variation in rhesus macaques. Molecular Biology and Evolution. 38. (4). p. 1460--1471. Oxford University Press

Hodgkins, Allyson, Harris, R Alan, Qian, Justin, Kellermayer, Richard(2021). NOVEL GENETIC SUSCEPTIBILITY CANDIDATES IN GRANULOMATOUS AND NON-GRANULOMATOUS PEDIATRIC CROHN’S DISEASE. Gastroenterology. 160. (3). p. S40. Elsevier

Zhou, Ting, Patel, Kalyani, Harris, R Alan, Seghers, Victor, Walsh, Seema M, Rodriguez, Ruben, Kellermayer, Richard, Wu, Hao(2021). SULT1A1 and SULT1A2 Associated Extensive Prolapse-Type Inflammatory Polyposis in Crohn’s Colitis. Annals of Clinical & Laboratory Science. 51. (6). p. 868--874. Assoc Clin Scientists

Paulin, Luis F, Raveendran, Muthuswamy, Harris, R Alan, Rogers, Jeffrey, von Haeseler, Arndt, Sedlazeck, Fritz J(2021). SVhound: Detection of future Structural Variation hotspots. bioRxiv. Cold Spring Harbor Laboratory

Melin, Amanda D, Orkin, Joseph D, Janiak, Mareike C, Valenzuela, Alejandro, Kuderna, Lukas, Marrone III, Frank, Ramangason, Hasinala, Horvath, Julie E, Roos, Christian, Kitchener, Andrew C, et al.(2021). Variation in predicted COVID-19 risk among lemurs and lorises. American journal of primatology. p. e23255.

Tapmeier, Thomas T, Rahmioglu, Nilufer, Lin, Jianghai, De Leo, Bianca, Obendorf, Maik, Raveendran, Muthuswamy, Fischer, Oliver M, Bafligil, Cemsel, Guo, Manman, Harris, Ronald Alan, et al.(2021). Neuropeptide S receptor 1 is a nonhormonal treatment target in endometriosis . Science Translational Medicine. 13. (608). American Association for the Advancement of Science

Fox, Andrew S, Harris, Ronald A, Del Rosso, Laura, Raveendran, Muthuswamy, Kamboj, Shawn, Kinnally, Erin L, Capitanio, John P, Rogers, Jeffrey(2021). Infant inhibited temperament in primates predicts adult behavior, is heritable, and is associated with anxiety-relevant genetic variation . Molecular Psychiatry. p. 1--10. Nature Publishing Group

Petty, Lauren E, Phillippi-Falkenstein, Kathrine, Kubisch, H Michael, Raveendran, Muthuswamy, Harris, R Alan, Vallender, Eric J, Huff, Chad D, Bohm, Rudolf P, Rogers, Jeffrey, Below, Jennifer E(2021). Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta) . Molecular Ecology Resources. 21. (4). p. 1333--1346.

Wesley C. Warren, R. Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason Fernandes, Philip C. Dishuck, Jessica M. Storer, Muthuswamy Raveendran, LaDeana W. Hillier, et al. (2020). Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility . Science.

Dan Vanderpool, Chris D. Jiggins, Bui Quang Minh, Robert Lanfear, Daniel Hughes, Shwetha Murali, R. Alan Harris, Muthuswamy Raveendran, Donna M. Muzny, Mark S. Hibbins, et al.(2020). Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression . PLOS Biology. 18. (12). p. e3000954. Public Library of Science ({PLoS})

R. Alan Harris, Muthuswamy Raveendran, Kim C. Worley, Jeffrey Rogers(2020). Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates . BMC Evolutionary Biology. 20. (1). Springer Science and Business Media {LLC}

Cheng Xue, Karol Sestak, Navin Rustagi, Xiaoming Liu, Muthuswamy Raveendran, R. Alan Harris, Manjunath Gorentla Venkata, Jeffrey Rogers, Fuli Yu (2020). Reduced meiotic recombination in rhesus macaques and the origin of the human recombination landscape . PLOS ONE.

Marina Bras&#243;-Vives, Lucia Carbone, Inna S. Povolotskaya, Diego A. Hartas&#225;nchez, Xavier Farr&#233;, Marcos Fernandez-Callejo, Muthuswamy Raveendran, R. Alan Harris, Douglas L. Rosene, Belen Lorente-Galdos, et al.(2020). Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta) . PLOS Genetics. 16. (5). p. e1008742. Public Library of Science ({PLoS})

Harris, R Alan, Raveendran, Muthuswamy, Worley, Kim C, Rogers, Jeffrey(2020). Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates . BMC Evolutionary Biology. 20. (1). p. 1--12. Springer

Vanderpool, Dan, Minh, Bui Quang, Lanfear, Robert, Hughes, Daniel, Murali, Shwetha, Harris, R Alan, Raveendran, Muthuswamy, Muzny, Donna M, Hibbins, Mark S, Williamson, Robert J, et al.(2020). Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression . PLoS biology. 18. (12). p. e3000954. Public Library of Science

Harris, Ronald, Lermi, Nejla Ozirmak, Gray, Stanton, Raveendran, Muthuswamy, Dray, Beth, Benavides, Fernando, Abee, Christian, Rogers, Jeffrey, Vilar, Eduardo(2020). 38. Comparative molecular genomic analyses of a Rhesus Lynch Syndrome model. Cancer Genetics. 244. p. 14--15. Elsevier

Xue, Cheng, Rustagi, Navin, Liu, Xiaoming, Raveendran, Muthuswamy, Harris, R Alan, Venkata, Manjunath Gorentla, Rogers, Jeffrey, Yu, Fuli(2020). Reduced meiotic recombination in rhesus macaques and the origin of the human recombination landscape . PloS one. 15. (8). p. e0236285.

Bras&#243;-Vives, Marina, Povolotskaya, Inna S, Hartas&#225;nchez, Diego A, Farr&#233;, Xavier, Fernandez-Callejo, Marcos, Raveendran, Muthuswamy, Harris, R Alan, Rosene, Douglas L, Lorente-Galdos, Belen, Navarro, Arcadi, et al.(2020). Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta). PLoS genetics. 16. (5). p. e1008742. Public Library of Science San Francisco, CA USA

Harris, R. Alan, Balint, Zsofia Kovacs, Raveendran, Muthuswamy, Michopoulos, Vasiliki, Bachevalier, Jocelyne, Raper, Jessica, Sanchez, Mar, Gunter, Chris, Rogers, Jeffrey (2020). Heritability and preliminary genetic association with social behavior and competence among juvenile rhesus macaques . American Journal of Physical Anthropology.

Wang, Richard J, Thomas, Gregg WC, Raveendran, Muthuswamy, Harris, R Alan, Doddapaneni, Harshavardhan, Muzny, Donna M, Capitanio, John P, Radivojac, Predrag, Rogers, Jeffrey, Hahn, Matthew W(2020). Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability. Genome research. 30. (6). p. 826--834. Cold Spring Harbor Lab

Thomas, Gregg W. C., Wang, Richard J., Harris, R. Alan, Raveendran, Muthuswamy, Rogers, Jeffrey, Hahn, Matthew W. (2020). Pedigree sequencing shows that life history plays a major role in mutation rate variation in primates . American Journal of Physical Anthropology.

Guevara, Elaine E., Webster, Timothy H., Lawler, Richard R., Bradley, Brenda J., Ranaivonasy, Jeannin, Ratsirarson, Joelisoa, Harris, R. Alan, Liu, Yue, Murali, S. C., Raveendran, M., et al. (2020). Pervasive genomic evidence for adaptation to a leaf-based diet in sifakas (genus <i>Propithecus</i>) . American Journal of Physical Anthropology.

Antony, Kathleen M, Kazembe, Peter N, Pace, Ryan M, Levison, Judy, Phiri, Henry, Chiudzu, Grace, Harris, Ronald Alan, Chirwa, Rose, Nyondo, Mary, Marko, Ellina, et al.(2020). Population-Based Estimation of the Preterm Birth Rate in Lilongwe, Malawi: Making Every Birth Count. American Journal of Perinatology Reports. 10. (01). p. e78--e86. Thieme Medical Publishers

Warren, Wesley C, Harris, R Alan, Haukness, Marina, Fiddes, Ian T, Murali, Shwetha C, Fernandes, Jason, Dishuck, Philip C, Storer, Jessica M, Raveendran, Muthuswamy, Hillier, LaDeana W, et al.(2020). Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility . Science. 370. (6523). American Association for the Advancement of Science

Jeffrey Rogers, Muthuswamy Raveendran, R. Alan Harris, Thomas Mailund, Kalle Lepp&#228;l&#228;, Georgios Athanasiadis, Mikkel Heide Schierup, Jade Cheng, Kasper Munch, Jerilyn A. Walker, et al.(2019). The comparative genomics and complex population history of Papio baboons . Science Advances. 5. (1). American Association for the Advancement of Science ({AAAS})

Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R Alan, Mailund, Thomas, Lepp&#228;l&#228;, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A, et al.(2019). The comparative genomics and complex population history of Papio baboons . Science Advances. 5. (1). p. eaau6947. American Association for the Advancement of Science

Moshiri, Ala, Chen, Rui, Kim, Soohyun, Harris, R. Alan, Li, Yumei, Raveendran, Muthuswamy, Davis, Sarah, Liang, Qingnan, Pomerantz, Ori, Wang, Jun, et al. (2019). A nonhuman primate model of inherited retinal disease . Journal of Clinical Investigation.

Moshiri, Ala, Chen, Rui, Kim, Soohyun, Harris, R Alan, Li, Yumei, Raveendran, Muthuswamy, Davis, Sarah, Liang, Qingnan, Pomerantz, Ori, Wang, Jun, et al.(2019). A nonhuman primate model of inherited retinal disease . The Journal of Clinical Investigation. 129. (2). Am Soc Clin Investig

Blesson, Chellakkan S., Mahadevan, Sangeetha, Tanchico, Daren, Balakrishnan, Meena, Harris, Ronald A., Yallampalli, Chandra (2019). Gestational Programming of Type 2 Diabetes: Does Methylation Play a Role? . Reproductive Sciences.

Antony, Kathleen M, Kazembe, Peter N, Pace, Ryan M, Levison, Judy, Mlotha-Namarika, Jesse, Phiri, Henry, Chiudzu, Grace, Harris, R Alan, Aagaard, Joshua, Twyman, Nicholas, et al.(2019). Population-Based Estimation of Dental Caries and Periodontal Disease Rates of Gravid and Recently Postpartum Women in Lilongwe, Malawi. American Journal of Perinatology Reports. 9. (03). p. e268--e274. Thieme Medical Publishers

Caskey, John R., Wiseman, Roger W., Karl, Julie A., Baker, David A., Lee, Taylor, Maddox, Robert J., Raveendran, Muthuswamy, Harris, R. Alan, Hu, Jianhong, Muzny, Donna M., et al. (2019). MHC genotyping from rhesus macaque exome sequences . Immunogenetics.

Caskey, John R, Wiseman, Roger W, Karl, Julie A, Baker, David A, Lee, Taylor, Maddox, Robert J, Raveendran, Muthuswamy, Harris, R Alan, Hu, Jianhong, Muzny, Donna M, et al.(2019). MHC genotyping from rhesus macaque exome sequences . Immunogenetics. p. 1--14. Springer Berlin Heidelberg

Pew, Braden, Harris, R Alan, Hu, Min, Aagaard, Kjersti(2018). 600: Maternal high-fat diet and the fetal liver: Integrative analysis of epigenomic and transcriptomic reprogramming in primates. American Journal of Obstetrics and Gynecology. 218. (1). p. S358--S359. Elsevier

Onuchic, Vitor, Lurie, Eugene, Carrero, Ivenise, Pawliczek, Piotr, Patel, Ronak Y., Rozowsky, Joel, Galeev, Timur, Huang, Zhuoyi, Altshuler, Robert C., Zhang, Zhizhuo, et al. (2018). Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci . Science.

Onuchic, Vitor, Lurie, Eugene, Carrero, Ivenise, Pawliczek, Piotr, Patel, Ronak Y, Rozowsky, Joel, Galeev, Timur, Huang, Zhuoyi, Altshuler, Robert C, Zhang, Zhizhuo, et al.(2018). Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci . Science. 361. (6409). p. eaar3146. American Association for the Advancement of Science

Guevara, Elaine E., Webster, Timothy H., Ranaivonasy, Jeannin, Ratsirarson, Joelisoa, Lawler, Richard R., Bradley, Brenda J., Harris, R. Alan., Liu, Yue, Murali, S. C., Raveendran, M., et al. (2018). Evolutionary genomics of Verreaux's sifaka (<i>Propithecus verreauxi</i>) . American Journal of Physical Anthropology.

Raveendran, Muthuswamy, Harris, R., Rogers, Jeffrey (2018). Functional genetic variation among rhesus macaques (Macaca mulatta): A newly recognized and powerful tool for research . American Journal of Physical Anthropology.

Pew, Braden, Harris, R. Alan, Hu, Min, Aagaard, Kjersti (2018). Maternal high-fat diet and the fetal liver: Integrative analysis of epigenomic and transcriptomic reprogramming in primates . American Journal of Obstetrics and Gynecology.

Dray, Beth K, Raveendran, Muthuswamy, Harris, R Alan, Benavides, Fernando, Gray, Stanton B, Perez, Carlos J, McArthur, Mark J, Williams, Lawrence E, Baze, Wallace B, Doddapaneni, Harsha, et al.(2018). Mismatch repair gene mutations lead to lynch syndrome colorectal cancer in rhesus macaques. Genes & cancer. 9. (3-4). p. 142. Impact Journals, LLC

Thomas, Gregg W. C., Wang, Richard J., Puri, Arthi, Harris, R. Alan, Raveendran, Muthuswamy, Hughes, Daniel S. T., Murali, Shwetha C., Williams, Lawrence E., Doddapaneni, Harsha, Muzny, Donna M., et al. (2018). Reproductive Longevity Predicts Mutation Rates in Primates . Current Biology.

Thomas, Gregg WC, Wang, Richard J, Puri, Arthi, Harris, R Alan, Raveendran, Muthuswamy, Hughes, Daniel ST, Murali, Shwetha C, Williams, Lawrence E, Doddapaneni, Harsha, Muzny, Donna M, et al.(2018). Reproductive longevity predicts mutation rates in primates . Current Biology. 28. (19). p. 3193--3197. Cell Press

Palesch, David, Bosinger, Steven E., Tharp, Gregory K., Vanderford, Thomas H., Paiardini, Mirko, Chahroudi, Ann, Johnson, Zachary P., Kirchhoff, Frank, Hahn, Beatrice H., Norgren, Robert B., Jr., et al. (2018). Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host . Nature.

Palesch, David, Bosinger, Steven E, Tharp, Gregory K, Vanderford, Thomas H, Paiardini, Mirko, Chahroudi, Ann, Johnson, Zachary P, Kirchhoff, Frank, Hahn, Beatrice H, Norgren, Robert B, et al.(2018). Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host . Nature. 553. (7686). p. 77. Nature Publishing Group

Schmidtke, Daniel, Lempp, Charlotte, Dubicanac, Marko, Radespiel, Ute, Zimmermann, Elke, Baumgaertner, Wolfgang, Kaestner, Sabine, Meier, Martin, Balkema-Buschmann, Anne, Harris, R. Alan, et al. (2018). Spontaneous Spongiform Brainstem Degeneration in a Young Mouse Lemur (<i>Microcebus murinus</i>) with Conspicuous Behavioral, Motor, Growth, and Ocular Pathologies . Comparative Medicine.

Schmidtke, Daniel, Lempp, Charlotte, Dubicanac, Marko, Radespiel, Ute, Zimmermann, Elke, Baumg&#228;rtner, Wolfgang, K&#228;stner, Sabine, Meier, Martin, Balkema-Buschmann, Anne, Harris, R Alan, et al.(2018). Spontaneous Spongiform Brainstem Degeneration in a Young Mouse Lemur (Microcebus murinus) with Conspicuous Behavioral, Motor, Growth, and Ocular Pathologies. Comparative medicine.

Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R Alan, Mailund, Thomas, Lepp&#228;l&#228;, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A, et al.(2018). The comparative genomics and complex population history of Papio baboons.

Rogers, Jeffrey, Harris, R. Alan, Raveendran, Muthuswamy, Worley, Kim C. (2018). Whole genome sequencing reveals ancient hybridization among baboon (<i>Papio</i>) species . American Journal of Physical Anthropology.

Racusin, Diana A, Pew, Braden, Harris, R Alan, Suter, Melissa, Delbeccaro, Melanie, Shope, Cindy, Hu, Min, Antony, Kathleen, Aagaard, Kjersti(2017). 111: Does your placenta know you're diabetic? A study in placental gene expression. American Journal of Obstetrics and Gynecology. 216. (1). p. S78--S79. Mosby

Pace, Ryan M, Harris, R Alan, Alcott, Callison E, Sullivan, Elinor L, Takahashi, Diana, McCurdy, Carrie E, Comstock, Sarah, Baquero, Karalee, Blundell, Peter, Frias, Antonio E, et al.(2017). 124: Genomic variants associated with resistance to high fat diet induced obesity in a primate model. American Journal of Obstetrics and Gynecology. 216. (1). p. S87. Mosby

Pew, Braden, Harris, R Alan, Hu, Min, Shope, Cindy, Aagaard, Kjersti(2017). 467: Epigenomic response of the fetal liver to maternal high-fat diet and resveratrol supplementation. American Journal of Obstetrics & Gynecology. 216. (1). p. S276--S277. Elsevier

Racusin, Diana A., Pew, Braden, Harris, R. Alan, Suter, Melissa, Delbeccaro, Melanie, Shope, Cindy, Hu, Min, Antony, Kathleen, Aagaard, Kjersti (2017). Does your placenta know you're diabetic? A study in placental gene expression . American Journal of Obstetrics and Gynecology.

Pew, Braden, Harris, R. Alan, Hu, Min, Shope, Cindy, Aagaard, Kjersti (2017). Epigenomic response of the fetal liver to maternal high-fat diet and resveratrol supplementation . American Journal of Obstetrics and Gynecology.

Larsen, Peter A., Harris, R. Alan, Liu, Yue, Murali, Shwetha C., Campbell, C. Ryan, Brown, Adam D., Sullivan, Beth A., Shelton, Jennifer, Brown, Susan J., Raveendran, Muthuswamy, et al. (2017). Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (<i>Microcebus murinus</i>) . BMC Biology.

Larsen, Peter A, Harris, R Alan, Liu, Yue, Murali, Shwetha C, Campbell, C Ryan, Brown, Adam D, Sullivan, Beth A, Shelton, Jennifer, Brown, Susan J, Raveendran, Muthuswamy, et al.(2017). Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). BMC Biology. 15. (1). p. 110. BioMed Central

Prall, Trent M., Graham, Michael E., Karl, Julie A., Wiseman, Roger W., Ericsen, Adam J., Raveendran, Muthuswamy, Harris, R. Alan, Muzny, Donna M., Gibbs, Richard A., Rogers, Jeffrey, et al. (2017). Improved full-length killer cell immunoglobulin-like receptor transcript discovery in Mauritian cynomolgus macaques . Immunogenetics.

Prall, Trent M, Graham, Michael E, Karl, Julie A, Wiseman, Roger W, Ericsen, Adam J, Raveendran, Muthuswamy, Harris, R Alan, Muzny, Donna M, Gibbs, Richard A, Rogers, Jeffrey, et al.(2017). Improved full-length killer cell immunoglobulin-like receptor transcript discovery in Mauritian cynomolgus macaques . Immunogenetics. 69. (5). p. 325--339. Springer Berlin Heidelberg

Aagaard, Kjersti M., Lahon, Anismrita, Suter, Melissa A., Arya, Ravi P., Seferovic, Maxim D., Vogt, Megan B., Hu, Min, Stossi, Fabio, Mancini, Michael A., Harris, R. Alan, et al. (2017). Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication . Scientific Reports.

Aagaard, Kjersti M, Lahon, Anismrita, Suter, Melissa A, Arya, Ravi P, Seferovic, Maxim D, Vogt, Megan B, Hu, Min, Stossi, Fabio, Mancini, Michael A, Harris, R Alan, et al.(2017). Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication . Scientific Reports. 7. p. 41389. Nature Publishing Group

Racusin, Diana A, Harris, R Alan, Suter, Melissa, Seferovic, Maxim, Hu, Min, Shope, Cynthia, Aagaard, Kjersti M(2016). 184: Pre-eclampsia, diabetes, and the placenta: a study in differential gene expression & molecular clues to disease states. American Journal of Obstetrics and Gynecology. 214. (1). p. S114--S115. Mosby

Prince, Amanda, Ma, Jun, Kannan, Paranthaman, Alvarez, Manuel, Glissen, Tate, Harris, R Alan, Knox, Christine, Jobe, Alan, Chougnet, Claire, Kallapur, Suhas, et al.(2016). 23: Antibiotics and betamethasone therapy do not significantly alter the placental microbiome in chorioamnionitis affected pregnancies. American Journal of Obstetrics and Gynecology. 214. (1). p. S17. Mosby

Antony, Kathleen M, Harris, R Alan, Levison, Judy, Banda, Bertha, Chiudzu, Grace, Chigano, Andrew, Chirwa, Rose, Nyondo, Mary, Marko, Ellina, Ramin, Susan, et al.(2016). 403: Population-based estimation of the preterm birth rate in malawi: making every birth count. American Journal of Obstetrics and Gynecology. 214. (1). p. S221--S222. Mosby

Antony, Kathleen M, Harris, R Alan, Levison, Judy, Banda, Bertha, Chiudzu, Grace, Chirwa, Rose, Nyondo, Mary, Marko, Ellina, Chigano, Andrew, Ramin, Susan, et al.(2016). 549: Population-based estimation of the peridontal disease rate in malawi and compliance with preventive/treatment measures. American Journal of Obstetrics and Gynecology. 214. (1). p. S295--S296. Mosby

Harris, R. Alan, Shah, Rajesh, Hollister, Emily B., Tronstad, Rune Rose, Hovdenak, Nils, Szigeti, Reka, Versalovic, James, Kellermayer, Richard (2016). Colonic Mucosal Epigenome and Microbiome Development in Children and Adolescents . Journal of Immunology Research.

Harris, R Alan, Alcott, Callison E, Sullivan, Elinor L, Takahashi, Diana, McCurdy, Carrie E, Comstock, Sarah, Baquero, Karalee, Blundell, Peter, Frias, Antonio E, Kahr, Maike, et al.(2016). Genomic Variants Associated with Resistance to High Fat Diet Induced Obesity in a Primate Model. Scientific Reports. 6. Nature Publishing Group

Srivastava, AK, Wang, Y, Huang, R, Skinner, C, Thompson, T, Pollard, L, Wood, T, Luo, F, Stevenson, R, Polimanti, R, et al.(2016). Human genome meeting 2016. Human Genomics. 10. (1). p. 12. BioMed Central

Mbarek, Hamdi, Steinberg, Stacy, Nyholt, Dale R., Gordon, Scott D., Miller, Michael B., McRae, Allan F., Hottenga, Jouke Jan, Day, Felix R., Willemsen, Gonneke, de Geus, Eco J., et al. (2016). Identification of Common Genetic Variants Influencing Spontaneous Dizygotic Twinning and Female Fertility . The American Journal of Human Genetics.

Mbarek, Hamdi, Steinberg, Stacy, Nyholt, Dale R, Gordon, Scott D, Miller, Michael B, McRae, Allan F, Hottenga, Jouke Jan, Day, Felix R, Willemsen, Gonneke, de Geus, Eco J, et al.(2016). Identification of common genetic variants influencing spontaneous dizygotic twinning and female fertility . The American Journal of Human Genetics. 98. (5). p. 898--908. Cell Press

Mbarek, Hamdi, Steinberg, Stacy, Nyholt, Dale R, Gordon, Scott D, Miller, Michael B, McRae, Allan F, Hottenga, Jouke Jan, Day, Felix R, Willemsen, Gonneke, de Geus, Eco J, et al.(2016). Identification of Common Genetic Variants Influencing Spontaneous Dizygotic Twinning and Female Fertility . The American Journal of Human Genetics. 98. (5). p. 898--908. Cell Press

Liu, Y, Murali, SC, Harris, RA, English, AC, Qin, X, Skinner, E, Richards, S, Rogers, J, Han, Y, Vee, V, et al.(2016). P1009 Sheep reference genome sequence updates: Texel improvements and Rambouillet progress. Journal of Animal Science. 94. (supplement4). p. 18--19. American Society of Animal Science

Antony, Kathleen M., Harris, R. Alan, Levison, Judy, Banda, Bertha, Chiudzu, Grace, Chirwa, Rose, Nyondo, Mary, Marko, Ellina, Chigano, Andrew, Ramin, Susan, et al. (2016). Population-based estimation of the peridontal disease rate in malawi and compliance with preventive/treatment measures . American Journal of Obstetrics and Gynecology.

Racusin, Diana A., Harris, R. Alan, Suter, Melissa, Seferovic, Maxim, Hu, Min, Shope, Cynthia, Aagaard, Kjersti M. (2016). Pre-eclampsia, diabetes, and the placenta: a study in differential gene expression & molecular clues to disease states . American Journal of Obstetrics and Gynecology.

Harris, R Alan, Shah, Rajesh, Hollister, Emily B, Tronstad, Rune Rose, Hovdenak, Nils, Szigeti, Reka, Versalovic, James, Kellermayer, Richard(2016). Research Article Colonic Mucosal Epigenome and Microbiome Development in Children and Adolescents.

Harris, R Alan, Guaman, Milenka Cuevas, Chen, Rui, Meloche, Sylvain, Aagaard, Kjersti(2016). Structural and transcriptomic response to antenatal. Elsevier Inc.

Pew, Braden K., Harris, R. Alan, Sbrana, Elena, Guaman, Milenka Cuevas, Shope, Cynthia, Chen, Rui, Meloche, Sylvain, Aagaard, Kjersti (2016). Structural and transcriptomic response to antenatal corticosteroids in an <i>Erk3</i>-null mouse model of respiratory distress . American Journal of Obstetrics and Gynecology.

Pew, Braden K, Harris, R Alan, Sbrana, Elena, Guaman, Milenka Cuevas, Shope, Cynthia, Chen, Rui, Meloche, Sylvain, Aagaard, Kjersti(2016). Structural and transcriptomic response to antenatal corticosteroids in an Erk3-null mouse model of respiratory distress. American journal of obstetrics and gynecology. 215. (3). p. 384--e1. Mosby

Stunnenberg, Hendrik G, Abrignani, Sergio, Adams, David, de Almeida, Melanie, Altucci, Lucia, Amin, Viren, Amit, Ido, Antonarakis, Stylianos E, Aparicio, Samuel, Arima, Takahiro, et al.(2016). The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery. Cell. 167. (5). p. 1145--1149. Elsevier

Prince, Amanda L, Ma, Jun, Kannan, Paranthaman S, Alvarez, Manuel, Gisslen, Tate, Harris, R Alan, Sweeney, Emma L, Knox, Christine L, Lambers, Donna S, Jobe, Alan H, et al.(2016). The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis. American journal of obstetrics and gynecology. 214. (5). p. 627--e1. Mosby

Xue, Cheng, Raveendran, Muthuswamy, Harris, R. Alan, Fawcett, Gloria L., Liu, Xiaoming, White, Simon, Dandouli, Mahmoud, Deiros, David Rio, Below, Jennifer E., Salerno, William, et al. (2016). The population genomics of rhesus macaques (<i>Macaca mulatta</i>) based on whole-genome sequences . Genome Research.

Xue, Cheng, Raveendran, Muthuswamy, Harris, R Alan, Fawcett, Gloria L, Liu, Xiaoming, White, Simon, Dahdouli, Mahmoud, Deiros, David Rio, Below, Jennifer E, Salerno, William, et al.(2016). The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences. Genome Research. 26. (12). p. 1651--1662. Cold Spring Harbor Lab

McDermott, Edel, Ryan, Elizabeth J., Tosetto, Miriam, Gibson, David, Burrage, Joe, Keegan, Denise, Byrne, Kathryn, Crowe, Eimear, Sexton, Gillian, Malone, Kevin, et al. (2016). DNA Methylation Profiling in Inflammatory Bowel Disease Provides New Insights into Disease Pathogenesis . Journal of Crohn's and Colitis.

McDermott, Edel, Ryan, Elizabeth J, Tosetto, Miriam, Gibson, David, Burrage, Joe, Keegan, Denise, Byrne, Kathryn, Crowe, Eimear, Sexton, Gillian, Malone, Kevin, et al.(2015). DNA methylation profiling in inflammatory bowel disease provides new insights into disease pathogenesis . Journal of Crohn's and Colitis. p. jjv176. The Oxford University Press

Racusin, Diana, Harris, R, Suter, Melissa, Antony, Kathleen, Aagaard, Kjersti(2015). 149: Differences in placental gene expression in gestational (GDM) & Type II diabetics. American Journal of Obstetrics & Gynecology. 212. (1). p. S91. Elsevier

Pew, Braden, Harris, R, Sbrana, Elena, Guaman, Milenka Cuevas, Klinger, Sonia, Shope, Cindy, Wang, Hui, Chen, Rui, Meloche, Sylvain, Aagaard, Kjersti(2015). 293: Transcriptomic analysis reveals potential roles for ERK3 in fetal lung maturation via surfactant protein B and corticotropin releasing hormone. American Journal of Obstetrics & Gynecology. 212. (1). p. S157--S158. Elsevier

Racusin, Diana, Villarreal, Sarah, Antony, Kathleen, Harris, R Alan, Mastrobattista, Joan, Shamshirsaz, Alireza, Belfort, Michael, Aagaard, Kjersti(2015). 2072391 Detection of Open Neural Tube Defects (ONTD) as an Opportunity for Intervention. Ultrasound in Medicine & Biology. 41. (4). p. S85--S86. Elsevier

Aagaard, Kjersti, Harris, R, Hao, Ke, Chen, Jia, Stodgell, Chris, Dudley, Joel, Schadt, Eric, Miller, RIchard(2015). 345: Novel insights on molecular targets of environmental exposures during pregnancy using placental multiomics integration. American Journal of Obstetrics & Gynecology. 212. (1). p. S182. Elsevier

Racusin, Diana, Villarreal, Sarah, Antony, Kathleen, Harris, R, Mastrobattista, Joan, Shamshirsaz, Alireza, Belfort, Michael, Aagaard, Kjersti(2015). 634: Detection of open neural tube defects (ONTD) as an opportunity for intervention. American Journal of Obstetrics & Gynecology. 212. (1). p. S312--S313. Elsevier

Yuan, Bo, Liu, Pengfei, Gupta, Aditya, Beck, Christine R., Tejomurtula, Anusha, Campbell, Ian M., Gambin, Tomasz, Simmons, Alexandra D., Withers, Marjorie A., Harris, R. Alan, et al. (2015). Comparative Genomic Analyses of the Human NPHP1 Locus Reveal Complex Genomic Architecture and Its Regional Evolution in Primates . PLOS Genetics.

Yuan, Bo, Liu, Pengfei, Gupta, Aditya, Beck, Christine R, Tejomurtula, Anusha, Campbell, Ian M, Gambin, Tomasz, Simmons, Alexandra D, Withers, Marjorie A, Harris, R Alan, et al.(2015). Comparative genomic analyses of the human NPHP1 locus reveal complex genomic architecture and its regional evolution in primates . PLoS Genet. 11. (12). p. e1005686. Public Library of Science

Amin, Viren, Harris, R. Alan, Onuchic, Vitor, Jackson, Andrew R., Charnecki, Tim, Paithankar, Sameer, Subramanian, Sai Lakshmi, Riehle, Kevin, Coarfa, Cristian, Milosavljevic, Aleksandar (2015). Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs . Nature Communications.

Amin, Viren, Harris, R Alan, Onuchic, Vitor, Jackson, Andrew R, Charnecki, Tim, Paithankar, Sameer, Subramanian, Sai Lakshmi, Riehle, Kevin, Coarfa, Cristian, Milosavljevic, Aleksandar(2015). Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs . Nature communications. 6. Nature Publishing Group

Srivastava, AK, Wang, Y, Huang, R, Skinner, C, Thompson, T, Pollard, L, Wood, T, Luo, F, Stevenson, R, Polimanti, R, et al.(2015). Human genome meeting 2016: Houston, TX, USA. 28 February-2 March 2016. Human genomics. 10. (Suppl 1).

Below, Jennifer E., Raveendran, Muthuswamy, Harris, Ronald A., Xue, Cheng, Ferguson, Betsy, Kanthaswamy, Sree, Smith, David G., Jolly, Clifford J., Phillips-Conroy, Jane, Muzny, Donna, et al. (2015). IBD estimation, segmental sharing detection, and pedigree reconstruction in non-human primates . Genetic Epidemiology.

Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J, et al.(2015). Integrative analysis of 111 reference human epigenomes. Nature. 518. (7539). p. 317--330. Nature Publishing Group

Elliott, GiNell, Hong, Chibo, Xing, Xiaoyun, Zhou, Xin, Li, Daofeng, Coarfa, Cristian, Bell, Robert J. A., Maire, Cecile L., Ligon, Keith L., Sigaroudinia, Mahvash, et al. (2015). Intermediate DNA methylation is a conserved signature of genome regulation . Nature Communications.

Elliott, GiNell, Hong, Chibo, Xing, Xiaoyun, Zhou, Xin, Li, Daofeng, Coarfa, Cristian, Bell, Robert JA, Maire, Cecile L, Ligon, Keith L, Sigaroudinia, Mahvash, et al.(2015). Intermediate DNA methylation is a conserved signature of genome regulation . Nature communications. 6. Nature Publishing Group

Nagy-Szakal, Dorottya, Mir, Sabina A. V., Harris, R. Alan, Dowd, Scot E., Yamada, Takeshi, Lacorazza, H. Daniel, Tatevian, Nina, Smith, C. Wayne, de Zoeten, Edwin F., Klein, John, et al. (2015). Loss of n-6 fatty acid induced pediatric obesity protects against acute murine colitis . The FASEB Journal.

Nagy-Szakal, Dorottya, Mir, Sabina AV, Harris, R Alan, Dowd, Scot E, Yamada, Takeshi, Lacorazza, H Daniel, Tatevian, Nina, Smith, C Wayne, de Zoeten, Edwin F, Klein, John, et al.(2015). Loss of n-6 fatty acid induced pediatric obesity protects against acute murine colitis . The FASEB Journal. p. fj--14. Federation of American Societies for Experimental Biology

Aagaard, Kjersti, Harris, R., Hao, Ke, Chen, Jia, Stodgell, Chris, Dudley, Joel, Schadt, Eric, Miller, RIchard (2015). Novel insights on molecular targets of environmental exposures during pregnancy using placental multiomics integration . American Journal of Obstetrics and Gynecology.

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, R Alan, Luna, Ruth Ann, Pitashny, Milena, Schady, Deborah, Mir, SA, Lopez, Monica E, Gilger, Mark A, Belmont, John, et al.(2015). Serial fecal microbiota transplantation alters mucosal gene expression in pediatric ulcerative colitis. The American journal of gastroenterology. 110. (4). p. 604.

Pew, Braden, Harris, R., Sbrana, Elena, Guaman, Milenka Cuevas, Klinger, Sonia, Shope, Cindy, Wang, Hui, Chen, Rui, Meloche, Sylvain, Aagaard, Kjersti (2015). Transcriptomic analysis reveals potential roles for ERK3 in fetal lung maturation via surfactant protein B and corticotropin releasing hormone . American Journal of Obstetrics and Gynecology.

Kellermayer, Richard, Harris, Ronald A(2015). Tu2020 Persistent Colonic Mucosal Epigenetic Changes in Pediatric Ulcerative Colitis. Gastroenterology. 148. (4). p. S--962. WB Saunders

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A, Tamara, Pereira N, Lewindon, Peter, Jhangiani, Shalini N, Gambin, Tomasz, Harpavat, Sanjiv, Wiszniewski, Wojciech K, Xavier, Daniela Dias, et al.(2015). Tu2021 High-Throughput Analyses of Liver Nucleic Acids Failed to Unravel a Common Etiology of Biliary Atresia. Gastroenterology. 148. (4). p. S--962. WB Saunders

White, Wendy, Raghuraman, Sriram, Harris, R Alan, Milosavljevic, Aleksandar, Baldwin, Elizabeth, Faksh, Arij, Trinidad, Mari Charisse, Brost, Brian, Rose, Carl, Borowski, Kristi, et al.(2014). 158: Genome wide maternal leukocyte DNA methylation analysis performed longitudinally throughout normal pregnancy. American Journal of Obstetrics & Gynecology. 210. (1). p. S92--S92. Elsevier

Aagaard, Kjersti, Levison, Judy, Banda, Bertha, Chigayo, Andrew, Chilaga, Owen, Chirwa, Rose, Nyondo, Mary, Gama, David, Tamula, Elizabeth, Harris, R Alan, et al.(2014). 522: Population-based estimation of the preterm birth rate in Malawi: making every birth count. American Journal of Obstetrics & Gynecology. 210. (1). p. S257--S258. Elsevier

Carbone, L, Alan Harris, R, Gnerre, S, Veeramah, KR, Lorente-Galdos, B, Huddleston, J(2014). 589 Meyer. TJ, Herrero, J., Roos, C., Aken, B., et al. p. 195--201.

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A, Tamara, Pereira N, Lewindon, Peter, Harpavat, Sanjiv, Finegold, Milton J, Belmont, John W, Ramm, Grant A, Shepherd, Ross W(2014). 849 The DNA Methylome and Transcriptome of Biliary Atresia. Gastroenterology. 146. (5). p. S--929. Elsevier

Kunde-Ramamoorthy, Govindarajan, Coarfa, Cristian, Laritsky, Eleonora, Kessler, Noah J, Harris, R Alan, Xu, Mingchu, Chen, Rui, Shen, Lanlan, Milosavljevic, Aleksandar, Waterland, Robert A(2014). Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing. Nucleic acids research. 42. (6). p. e43--e43. Oxford University Press

Harris, R. Alan, Nagy-Szakal, Dorottya, Mir, Sabina A. V., Frank, Eibe, Szigeti, Reka, Kaplan, Jess L., Bronsky, Jiri, Opekun, Antone, Ferry, George D., Winter, Harland, et al. (2014). DNA methylation-associated colonic mucosal immune and defense responses in treatment-naive pediatric ulcerative colitis . Epigenetics.

Harris, R Alan, Nagy-Szakal, Dorottya, Mir, Sabina AV, Frank, Eibe, Szigeti, Reka, Kaplan, Jess L, Bronsky, Jiri, Opekun, Antone, Ferry, George D, Winter, Harland, et al.(2014). DNA methylation-associated colonic mucosal immune and defense responses in treatment-näıve pediatric ulcerative colitis. Epigenetics. 9. (8). p. 1131--1137. Landes Bioscience

Harris, R. Alan, Tardif, Suzette D., Vinar, Tomas, Wildman, Derek E., Rutherford, Julienne N., Rogers, Jeffrey, Worley, Kim C., Aagaard, Kjersti M. (2014). Evolutionary genetics and implications of small size and twinning in callitrichine primates . Proceedings of the National Academy of Sciences.

Harris, R Alan, Tardif, Suzette D, Vinar, Tomas, Wildman, Derek E, Rutherford, Julienne N, Rogers, Jeffrey, Worley, Kim C, Aagaard, Kjersti M(2014). Evolutionary genetics and implications of small size and twinning in callitrichine primates . Proceedings of the National Academy of Sciences. 111. (4). p. 1467--1472. National Acad Sciences

White, Wendy, Raghuraman, Sriram, Harris, R. Alan, Milosavljevic, Aleksandar, Baldwin, Elizabeth, Faksh, Arij, Trinidad, Mari Charisse, Brost, Brian, Rose, Carl, Borowski, Kristi, et al. (2014). Genome wide maternal leukocyte DNA methylation analysis performed longitudinally throughout normal pregnancy . American Journal of Obstetrics and Gynecology.

Carbone, Lucia, Harris, R Alan, Gnerre, Sante, Veeramah, Krishna R, Lorente-Galdos, Belen, Huddleston, John, Meyer, Thomas J, Herrero, Javier, Roos, Christian, Aken, Bronwen, et al.(2014). Gibbon genome and the fast karyotype evolution of small apes. Nature. 513. (7517). p. 195--201. Nature Publishing Group

Ma, Jun, Prince, Amanda L, Bader, David, Hu, Min, Ganu, Radhika, Baquero, Karalee, Blundell, Peter, Harris, R Alan, Frias, Antonio E, Grove, Kevin L, et al.(2014). High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model. Nature communications. 5. Nature Publishing Group

Suter, Melissa A, Ma, Jun, Vuguin, Patricia M, Hartil, Kirsten, Fiallo, Ariana, Harris, R Alan, Charron, Maureen J, Aagaard, Kjersti M(2014). In utero exposure to a maternal high-fat diet alters the epigenetic histone code in a murine model. American Journal of Obstetrics and Gynecology. 210. (5). p. 463--e1. Elsevier

Nagy-Szakal, Dorottya, Mir, Sabina, Harris, Ronald A., Dowd, Scot E., Yamada, Takeshi, Lacorazza, Daniel, Tatevian, Nina, Kellermayer, Richard (2014). Microbiome and Host Factors Communicate Protection Against Acute Murine Colitis Following Omega-6 Fatty Acid Induced Transient Pediatric Obesity . Gastroenterology.

Harris, R Alan, Suter, Melissa, Arndt, Melanie, Hu, Min, Aagaard, Kjersti(2014). Placental whole transcriptome analysis reveals significant differential gene expression patterns among term diabetic gravidae. Placenta. 35. (9). p. A27. WB Saunders

Nagy-Szakal, Dorottya, Mir, Sabina, Harris, Ronald A, Dowd, Scot E, Yamada, Takeshi, Lacorazza, Daniel, Tatevian, Nina, Kellermayer, Richard(2014). Sa1742 Microbiome and Host Factors Communicate Protection Against Acute Murine Colitis Following Omega-6 Fatty Acid Induced Transient Pediatric Obesity. Gastroenterology. 146. (5). p. S--286. Elsevier

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A., Tamara, Pereira N., Lewindon, Peter, Harpavat, Sanjiv, Finegold, Milton J., Belmont, John W., Ramm, Grant A., Shepherd, Ross W. (2014). The DNA Methylome and Transcriptome of Biliary Atresia . Gastroenterology.

Worley, Kim C, Warren, Wesley C, Rogers, Jeffrey, Locke, Devin, Muzny, Donna M, Mardis, Elaine R, Weinstock, George M, Tardif, Suzette D, Aagaard, Kjersti M, Archidiacono, Nicoletta, et al.(2014). The common marmoset genome provides insight into primate biology and evolution. Nature Genetics. 46. (8). p. 850--857.

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A, Hollister, Emily B, Mir, Sabina, Luna, Ruth A, Pitashny, Milena, Schady, Deborah, Lopez, Monica E, Gilger, Mark A, et al.(2014). Tu1192 Clinical, Epigenetic, and Metagenomic Responses to Serial Fecal Microbiome Transplants in Pediatric Ulcerative Colitis. Gastroenterology. 146. (5). p. S--780. Elsevier

Aagaard, Kjersti, Munch, Erika, Harris, R Alan, Mohammad, Mahmoud, Benham, Ashley, Pejerrey, Sasha, Gunaratne, Preethi, Haymond, Morey(2013). 219: Profiling of microRNA by next-gen deep sequencing reveals novel and modifiable miRNA species in human breast milk. American Journal of Obstetrics & Gynecology. 208. (1). p. S101--S101. Elsevier

Harris, R Alan, Suter, Melissa, Arndt, Melanie, Hu, Min, Aagaard, Kjersti(2013). 56: Placental whole transcriptome analysis reveals significant differential gene expression patterns among term diabetic gravidae. American Journal of Obstetrics & Gynecology. 208. (1). p. S34--S34. Elsevier

Harris, R Alan, Suter, Melissa, Arndt, Melanie, Hu, Min, Aagaard, Kjersti(2013). 56: Placental whole transcriptome analysis reveals significant differential gene expression patterns among term diabetic gravidae. American Journal of Obstetrics & Gynecology. 208. (1). p. S34. Elsevier

Harris, R. Alan, Shaw, Chad, Li, Jian, Cheung, Sau Wai, Coarfa, Cristian, Jeong, Mira, Goodell, Margaret A., White, Lisa D., Patel, Ankita, Kang, Sung-Hae, et al. (2013). Confounding by Repetitive Elements and CpG Islands Does Not Explain the Association between Hypomethylation and Genomic Instability . PLOS Genetics.

Harris, R Alan, Shaw, Chad, Li, Jian, Cheung, Sau Wai, Coarfa, Cristian, Jeong, Mira, Goodell, Margaret A, White, Lisa D, Patel, Ankita, Kang, Sung-Hae, et al.(2013). Confounding by Repetitive Elements and CpG Islands Does Not Explain the Association between Hypomethylation and Genomic Instability . PLoS genetics. 9. (2). p. e1003333. Public Library of Science

Harris, R. Alan, Tardif, Suzette D., Vinar, Tomas, Wildman, Derek E., Rutherford, Julienne, Rogers, Jeffrey, Worley, Kim C., Aagaard, Kjersti M. (2013). Evolutionary Genetics of Dizygotic Twinning and Small Body Size in Callitrichine Primates . Reproductive Sciences.

Harris, R. Alan, Nagy-Szakal, Dorottya, Kellermayer, Richard (2013). Human metastable epiallele candidates link to common disorders . Epigenetics.

Harris, R Alan, Nagy-Szakal, Dorottya, Kellermayer, Richard(2013). Human metastable epiallele candidates link to common disorders . Epigenetics. 8. (2). p. 157--163. Landes Bioscience

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A., Perreira, Tamara N., Lewindon, Peter J., Ramm, Grant A., Shepherd, Ross (2013). The Developmental Origins of Biliary Atresia . Hepatology.

Munch, Erika M., Harris, R. Alan, Mohammad, Mahmoud, Benham, Ashley L., Pejerrey, Sasha M., Showalter, Lori, Hu, Min, Shope, Cynthia D., Maningat, Patricia D., Gunaratne, Preethi H., et al. (2013). Transcriptome Profiling of microRNA by Next-Gen Deep Sequencing Reveals Known and Novel miRNA Species in the Lipid Fraction of Human Breast Milk . Plos One.

Munch, Erika M, Harris, R Alan, Mohammad, Mahmoud, Benham, Ashley L, Pejerrey, Sasha M, Showalter, Lori, Hu, Min, Shope, Cynthia D, Maningat, Patricia D, Gunaratne, Preethi H, et al.(2013). Transcriptome Profiling of microRNA by Next-Gen Deep Sequencing Reveals Known and Novel miRNA Species in the Lipid Fraction of Human Breast Milk . PloS one. 8. (2). p. e50564. Public Library of Science

Munch, Erika, Harris, R Alan, Mohammad, Mahmoud, Benham, Ashley, Hu, Min, Gunaratne, Preethi, Haymond, Morey, Aagaard, Kjersti(2012). 169: Novel molecular determinates of newborn health: micro (miRNA) expression profiling in breast milk employing next generation smRNA sequencing. American Journal of Obstetrics and Gynecology. 206. (1). p. S88. Mosby

Cuevas-Guaman, Milenka, Sbrana, Elena, Shope, Cynthia, Harris, R Alan, Welty, Stephen, Meloche, Sylvain, Aagaard, Kjersti(2012). 513: Antenatal glucocorticoids and postnatal surfactant treatment partially rescues neonatal lethality and pulmonary immaturity in an ERK3-/-knockout (ko) murine model of intrauterine growth restriction (IUGR). American Journal of Obstetrics and Gynecology. 206. (1). p. S232--S233. Mosby

Harris, R Alan, Ross, Corinna, Wildman, Derek, Worley, Kim, Rogers, Jeff, Tardiff, Suzette, Aagaard, Kjersti(2012). 717: Evolutionary genetics of dizygotic twinning in callitrichid new world monkeys (NWM). American Journal of Obstetrics and Gynecology. 206. (1). p. S318--S319. Mosby

Ganu, Radhika, Harris, R Alan, Bocock, Philip, Showalter, Lori, Collins, Kiarra, Grove, Kevin, Lane, Robert, Aagaard, Kjersti(2012). 8: A primate epigenome-wide custom array of 244K reveals that a maternal high fat (HF) diet discriminately alters the fetal liver methylome in a primate model of maternal obesity. American Journal of Obstetrics and Gynecology. 206. (1). p. S4--S5. Mosby

Suter, Melissa A, Chen, Aishe, Burdine, Marie S, Choudhury, Mahua, Harris, R Alan, Lane, Robert H, Friedman, Jacob E, Grove, Kevin L, Tackett, Alan J, Aagaard, Kjersti M(2012). A maternal high-fat diet modulates fetal SIRT1 histone and protein deacetylase activity in nonhuman primates. The FASEB Journal. 26. (12). p. 5106--5114. FASEB

Carbone, Lucia, Harris, R. Alan, Mootnick, Alan R., Milosavljevic, Aleksandar, Martin, David I. K., Rocchi, Mariano, Capozzi, Oronzo, Archidiacono, Nicoletta, Konkel, Miriam K., Walker, Jerilyn A., et al. (2012). Centromere Remodeling in <i>Hoolock leuconedys</i> (Hylobatidae) by a New Transposable Element Unique to the Gibbons . Genome Biology and Evolution.

Carbone, Lucia, Harris, R Alan, Mootnick, Alan R, Milosavljevic, Aleksandar, Martin, David IK, Rocchi, Mariano, Capozzi, Oronzo, Archidiacono, Nicoletta, Konkel, Miriam K, Walker, Jerilyn A, et al.(2012). Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons . Genome biology and evolution. 4. (7). p. 648--658. Oxford University Press

Carbone, Lucia, Harris, R Alan, Mootnick, Alan R, Milosavljevic, Aleksandar, Konkel, Miriam, Batzer, Mark A, Rocchi, Mariano, Archidiacono, Nicoletta(2012). Centromeric activation of a novel lineage-specific composite transposable element in the eastern hoolock gibbon (Hoolock leuconedys). Genomic Impact Of Eukaryotic Transposable Elements. p. 8.

Harris, Ronald, Kellermayer, Richard, Nagy-Szakal, Dorottya, Cox, Stephen, Dowd, Scot, Winter, Harland, Mir, Sabina (2012). DNA Methylation and Microbiota Separation of Ulcerative Colitis in Treatment Naive Children . Inflammatory Bowel Diseases.

Harris, Ronald, Kellermayer, Richard, Nagy-Szakal, Dorottya, Cox, Stephen, Dowd, Scot, Winter, Harland, Mir, Sabina(2012). DNA Methylation and Microbiota Separation of Ulcerative Colitis in Treatment Naive Children: P-115. Inflammatory Bowel Diseases. 18. p. S60--S61. LWW

Ganu, Radhika S, Harris, R Alan, Collins, Kiara, Aagaard, Kjersti M(2012). Early Origins of Adult Disease: Approaches for Investigating the Programmable Epigenome in Humans, Nonhuman Primates, and Rodents. ILAR Journal. 53. (3-4). p. 306--321. Oxford University Press

Davies, Matthew N, Volta, Manuela, Pidsley, Ruth, Lunnon, Katie, Dixit, Abhishek, Lovestone, Simon, Coarfa, Cristian, Harris, R Alan, Milosavljevic, Aleksandar, Troakes, Claire, et al.(2012). Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood. Genome Biol. 13. (6). p. R43.

Harris, R Alan, Ferrari, Francesca, Ben-Shachar, Shay, Wang, Xiaoling, Saade, George, Van Den Veyver, Ignatia, Facchinetti, Fabio, Aagaard-Tillery, Kjersti(2012). Genome-Wide Array-Based Copy Number Profiling in Human Placentas From Unexplained Stillbirths. Obstetrical & Gynecological Survey. 67. (2). p. 84--86. LWW

Harris, R Alan, Nagy-Szakal, Dorottya, Pedersen, Natalia, Opekun, Antone, Bronsky, Jiri, Munkholm, Pia, Jespersgaard, Cathrine, Andersen, PaalSkytt, Melegh, Bela, Ferry, George, et al.(2012). Genome-wide peripheral blood leukocyte DNA methylation microarrays identified a single association with inflammatory bowel diseases. Inflammatory Bowel Diseases. 18. (12). p. 2334--2341. Wiley Online Library

Li, Jian, Harris, R. Alan, Cheung, Sau Wai, Coarfa, Cristian, Jeong, Mira, Goodell, Margaret A., White, Lisa D., Patel, Ankita, Kang, Sung-Hae, Shaw, Chad, et al. (2012). Genomic Hypomethylation in the Human Germline Associates with Selective Structural Mutability in the Human Genome . PLOS Genetics.

Li, Jian, Harris, R Alan, Cheung, Sau Wai, Coarfa, Cristian, Jeong, Mira, Goodell, Margaret A, White, Lisa D, Patel, Ankita, Kang, Sung-Hae, Shaw, Chad, et al.(2012). Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome . PLoS Genet. 8. (5). p. e1002692. Public Library of Science

Suter, Melissa A, Sangi-Haghpeykar, Haleh, Showalter, Lori, Shope, Cynthia, Hu, Min, Brown, Kathleen, Williams, Sarah, Harris, R Alan, Grove, Kevin L, Lane, Robert H, et al.(2012). Maternal High-Fat Diet Modulates the Fetal Thyroid Axis and Thyroid Gene Expression in a Nonhuman Primate Model. Molecular Endocrinology. 26. (12). p. 2071--2080. Endocrine Soc

Ganu, RS, Harris, RA, Collins, K, Aagaard, KM(2012). Maternal diet: a modulator for epigenomic regulation during development in nonhuman primates and humans. International Journal of Obesity Supplements. 2. p. S14--S18. Nature Publishing Group

Fawcett, Gloria L, Raveendran, Muthuswamy, Deiros, David R, Chen, David, Yu, Fuli, Harris, Ronald A, Ren, Yanru, Muzny, Donna M, Reid, Jeffrey G, Wheeler, David A, et al.(2011). Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta). BMC genomics. 12. (1). p. 311. BioMed Central Ltd

Kellermayer, Richard, Dowd, Scot E., Harris, R. Alan, Balasa, Alfred, Schaible, Tiffany D., Wolcott, Randy D., Tatevian, Nina, Szigeti, Reka, Li, Zhijie, Versalovic, James, et al. (2011). Colonic mucosal DNA methylation, immune response, and microbiome patterns in Toll-like receptor 2-knockout mice . The FASEB Journal.

Kellermayer, Richard, Dowd, Scot E, Harris, R Alan, Balasa, Alfred, Schaible, Tiffany D, Wolcott, Randy D, Tatevian, Nina, Szigeti, Reka, Li, Zhijie, Versalovic, James, et al.(2011). Colonic mucosal DNA methylation, immune response, and microbiome patterns in Toll-like receptor 2-knockout mice . The FASEB Journal. 25. (5). p. 1449--1460. FASEB

Kellermayer, Richard, Harris, Alan, Nagy-Szakal, Dorottya, Pedersen, Natalia, Opekun, Antone, Bronsky, Jiri, Munkholm, Pia, Jespersgaard, Catherine, Andersen, Paal Skytt, Melegh, Bela, et al.(2011). Genome wide peripheral blood leukocyte DNA methylation microarrays failed to identify associations with Inflammatory Bowel Diseases: P-176. Inflammatory Bowel Diseases. 17. p. S65. LWW

Harris, R Alan, Ferrari, Francesca, Ben-Shachar, Shay, Wang, Xiaoling, Saade, George, Van Den Veyver, Ignatia, Facchinetti, Fabio, Aagaard-Tillery, Kjersti(2011). Genome-wide array-based copy number profiling in human placentas from unexplained stillbirths. Prenatal diagnosis. 31. (10). p. 932--944. Wiley Online Library

Schaible, Tiffany D, Harris, R Alan, Dowd, Scot E, Smith, C Wayne, Kellermayer, Richard(2011). Maternal methyl-donor supplementation induces prolonged murine offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes. Human molecular genetics. 20. (9). p. 1687--1696. Oxford Univ Press

Schaible, Tiffany D., Harris, R. Alan, Dowd, Scot E., Smith, C. Wayne, Kellermayer, Richard (2011). Maternal methyl-donor supplementation induces prolonged muring offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes . Human Molecular Genetics.

Melissa Suter, Jun Ma, Alan Harris, Lauren Patterson, Kathleen A Brown, Cynthia Shope, Lori Showalter, Adi Abramovici, Kjersti M Aagaard-Tillery(2011). Maternal tobacco use modestly alters correlated epigenome-wide placental DNA methylation and gene expression. Epigenetics. 6. (11). p. 1284--1294. Taylor \& Francis

Kellermayer, R, Balasa, A, Harris, A, Schaible, T, Dowd, S, Tatevian, N, Szigeti, R, Smith, W(2011). Toll-like receptor 2 deficiency induces epigenomic, transcriptomic and microbiomic changes in the colonic mucosa of mice.: O-005. Inflammatory Bowel Diseases. 17. p. S2. LWW

Nagy-Szakal, Dorottya, Mir, Sabina, Harris, Alan R, Dowd, Scot E, Yamada, Takeshi, Lacorazza, Daniel H, Tatevian, Nina, Kellermayer, Richard(2011). Transient high omega-6 fatty acid diet during pediatric development persistently protects against colitis in mice: P-219. Inflammatory Bowel Diseases. 17. p. S77. LWW

Fawcett, Gloria L., Raveendran, Muthuswamy, Deiros, David Rio, Chen, David, Yu, Fuli, Harris, Ronald Alan, Ren, Yanru, Muzny, Donna M., Reid, Jeffrey G., Wheeler, David A., et al. (2011). Characterization of single-nucleotide variation in Indian-origin rhesus macaques (<i>Macaca mulatta</i>) . BMC Genomics.

Harris, R Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P, Hong, Chibo, Downey, Sara L, Johnson, Brett E, Fouse, Shaun D, Delaney, Allen, Zhao, Yongjun, et al.(2010). Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature biotechnology. 28. (10). p. 1097--1105. Nature Publishing Group

Ahn, Hyo Won, Morin, Ryan D, Zhao, Han, Harris, Ronald A, Coarfa, Cristian, Chen, Zi-Jiang, Milosavljevic, Aleksandar, Marra, Marco A, Rajkovic, Aleksandar(2010). MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing. Molecular human reproduction. 16. (7). p. 463--471. Oxford Univ Press

Coarfa, Cristian, Yu, Fuli, Miller, Christopher, Chen, Zuozhou, Harris, R Alan, Milosavljevic, Aleksandar(2010). Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. BMC bioinformatics. 11. (1). p. 572. BioMed Central Ltd

Polikepahad, Sumanth, Knight, John M, Naghavi, Arash O, Oplt, Toni, Creighton, Chad J, Shaw, Chad, Benham, Ashley L, Kim, Jong, Soibam, Benjamin, Harris, R Alan, et al.(2010). Proinflammatory role for let-7 microRNAS in experimental asthma. Journal of Biological Chemistry. 285. (39). p. 30139--30149. ASBMB

Kellermayer, Richard, Balasa, Alfred, Tatevian, Nina, Harris, Ronald A, Schaible, Tiffany D(2010). S2000 Decreased Murine Colitis Susceptibility Following Reversal From High Omega-6 Fatty Acid Diet During Pediatric Development. Gastroenterology. 138. (5). p. S--298. WB Saunders

Waterland, RA, Kellermayer, R, Laritsky, E, Rayco-Solon, P, Harris, RA, Whitelaw, Emma, others(2010). Season of Conception in Rural Gambia Affects DNA Methylation at.

Waterland, Robert A, Kellermayer, Richard, Laritsky, Eleonora, Rayco-Solon, Pura, Harris, R Alan, Travisano, Michael, Zhang, Wenjuan, Torskaya, Maria S, Zhang, Jiexin, Shen, Lanlan, et al.(2010). Season of conception in rural gambia affects DNA methylation at putative human metastable epialleles. PLoS Genet. 6. (12). p. e1001252--e1001252.

Hampton, Oliver A., Den Hollander, Petra, Miller, Christopher A., Delgado, David A., Li, Jian, Coarfa, Cristian, Harris, Ronald A., Richards, Stephen, Scherer, Steven E., Muzny, Donna M., et al. (2009). A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome . Genome Research.

Hampton, Oliver A, Den Hollander, Petra, Miller, Christopher A, Delgado, David A, Li, Jian, Coarfa, Cristian, Harris, Ronald A, Richards, Stephen, Scherer, Steven E, Muzny, Donna M, et al.(2009). A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome . Genome Research. 19. (2). p. 167--177. Cold Spring Harbor Lab

Carbone, L, Harris, RA, Vessere, GM, Mootnick, AR, Humphray, S, Ferguson-Smith, Anne C, others(2009). Evolutionary Breakpoints in the Gibbon Suggest Association between.

Carbone, Lucia, Harris, R Alan, Vessere, Gery M, Mootnick, Alan R, Humphray, Sean, Rogers, Jane, Kim, Sung K, Wall, Jeffrey D, Martin, David, Jurka, Jerzy, et al.(2009). Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet. 5. (6). p. e1000538--e1000538.

Ma, Lang, Buchold, Gregory M., Greenbaum, Michael P., Roy, Angshumoy, Burns, Kathleen H., Zhu, Huifeng, Han, Derek Y., Harris, R. Alan, Coarfa, Cristian, Gunaratne, Preethi H., et al. (2009). GASZ Is Essential for Male Meiosis and Suppression of Retrotransposon Expression in the Male Germline . PLOS Genetics.

Ma, Lang, Buchold, Gregory M, Greenbaum, Michael P, Roy, Angshumoy, Burns, Kathleen H, Zhu, Huifeng, Han, Derek Y, Harris, R Alan, Coarfa, Cristian, Gunaratne, Preethi H, et al.(2009). GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline . PLoS Genet. 5. (9). p. e1000635.

Harris, Ronald, Bocock, Philip, Milosavljevic, Aleksandar, Grove, Kevin, Lane, Robert, Aagaard-Tillery, Kjersti (2009). Identification of Global Epigenetic Modifications from a High Fat Maternal (HFM) Diet Using a Comparative Methylation Array . Reproductive Sciences.

Harris, Ronald, Hampton, Oliver, Den Hollander, Petra, Delgado, David, Li, Jian, Lee, Adrian, Milosavljevic, Aleksandar(2008). Basepair-level map of chromosomal aberrations in the MCF-7 breast cancer cell line yields insights into evolution of a cancer genome. Cancer Research. 68. (9 Supplement). p. 4332--4332. American Association for Cancer Research

Raveendran, M, Tardif, S, Ross, CN, Austad, SN, Harris, RA, Milosavljevic, A, Rogers, J(2008). Polymorphic microsatellite loci for the common marmoset (Callithrix jacchus) designed using a cost-and time-efficient method. American journal of primatology. 70. (9). p. 906--910. Wiley Online Library

Majewski, Tadeusz, Lee, Sangkyou, Jeong, Joon, Yoon, Dong-Sup, Kram, Andrzej, Kim, Mi-Sook, Tuziak, Tomasz, Bondaruk, Jolanta, Lee, Sooyong, Park, Weon-Seo, et al.(2008). Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy. Laboratory investigation. 88. (7). p. 694--721. Nature Publishing Group

Gibbs, Richard A, Rogers, Jeffrey, Katze, Michael G, Bumgarner, Roger, Weinstock, George M, Mardis, Elaine R, Remington, Karin A, Strausberg, Robert L, Venter, J Craig, Wilson, Richard K, et al.(2007). Evolutionary and biomedical insights from the rhesus macaque genome. science. 316. (5822). p. 222--234. American Association for the Advancement of Science

Harris, RA, Rogers, J, Milosavljevic, A(2007). Human-specific changes of genome structure detected by genomic triangulation. Science. 316. (5822). p. 235--237. American Association for the Advancement of Science

Carbone, Lucia, Vessere, Gery M., ten Hallers, Boudewijn F. H., Zhu, Baoli, Osoegawa, Kazutoyo, Mootnick, Alan, Kofler, Andrea, Wienberg, Johannes, Rogers, Jane, Humphray, Sean, et al. (2006). A high-resolution map of synteny disruptions in gibbon and human genomes . PLOS Genetics.

Carbone, Lucia, Vessere, Gery M, ten Hallers, Boudewijn FH, Zhu, Baoli, Osoegawa, Kazutoyo, Mootnick, Alan, Kofler, Andrea, Wienberg, Johannes, Rogers, Jane, Humphray, Sean, et al.(2006). A high-resolution map of synteny disruptions in gibbon and human genomes .

Raveendran, Muthuswamy, Harris, R. Alan, Milosavljevic, Aleksandar, Johnson, Zach, Shelledy, Wendy, Cameron, Judy, Rogers, Jeffrey (2006). Designing new microsatellite markers for linkage and population genetic analyses in rhesus macaques and other nonhuman primates . Genomics.

Raveendran, Muthuswamy, Harris, R Alan, Milosavljevic, Aleksandar, Johnson, Zach, Shelledy, Wendy, Cameron, Judy, Rogers, Jeffrey(2006). Designing new microsatellite markers for linkage and population genetic analyses in rhesus macaques and other nonhuman primates . Genomics. 88. (6). p. 706--710. Elsevier

Muzny, Donna M, Scherer, Steven E, Kaul, Rajinder, Wang, Jing, Yu, Jun, Sudbrak, Ralf, Buhay, Christian J, Chen, Rui, Cree, Andrew, Ding, Yan, et al.(2006). The DNA sequence, annotation and analysis of human chromosome 3. Nature. 440. (7088). p. 1194--1198. Nature Publishing Group

Scherer, Steven E, Muzny, Donna M, Buhay, Christian J, Chen, Rui, Cree, Andrew, Ding, Yan, Dugan-Rocha, Shannon, Gill, Rachel, Gunaratne, Preethi, Harris, R Alan, et al.(2006). The finished DNA sequence of human chromosome 12. Nature. 440. (7082). p. 346--351. Nature Publishing Group

Milosavljevic, Aleksandar, Harris, Ronald A, Sodergren, Erica J, Jackson, Andrew R, Kalafus, Ken J, Hodgson, Anne, Cree, Andrew, Dai, Weilie, Csuros, Miklos, Zhu, Baoli, et al.(2005). Pooled genomic indexing of rhesus macaque . Genome research. 15. (2). p. 292--301. Cold Spring Harbor Lab

Milosavljevic, A, Harris, RA, Sodergren, EJ, Jackson, AR, Kalafus, KJ, Hodgson, A, Cree, A, Dai, WL, Csuros, M, Zhu, BL, et al. (2005). Pooled genomic indexing of rhesus macaque . Genome Research.

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A, Hollister, Emily B, Mir, Sabina, Luna, Ruth A, Pitashny, Milena, Schady, Deborah, Lopez, Monica E, Gilger, Mark A, et al.Clinical, Epigenetic, and Metagenomic Responses to Serial Fecal Microbiome Transplants in Pediatric Ulcerative Colitis.

Watson, Ashleigh, Harris, R Alan, Oezguen, Numan, Kellermayer, RichardA familial early-onset Crohn's disease-based testing of a small bowel versus colonic location-associated discovery gene network. Journal of pediatric gastroenterology and nutrition.

Ma, J, Prince, AL, Bader, D, Hu, M, Ganu, R, Baquero, K, Blundell, P, Alan Harris, R, Frias, AE, Grove, KL, et al.High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model. Nat Commun 2014; 5: 3889. the text.

Harris, R Alan, Milosavljevic, AleksandarHuman-specific Changes of Genome Structure. eLS. Wiley Online Library

Fawcett, GL, Raveendran, M, Deiros, D Rio, Chen, D, Harris, RA, Bainbridge, M, Muzny, DM, DA, J Reid, Wheeler, KC, Milosavljevic, A, et al.IDENTIFICATION AND VALIDATION OF DNA SEQUENCE VARIATION (SNPS) IN RHESUS MACAQUES USING NEXT-GEN SEQUENCING.

Prall, Trent M, Graham, Michael E, Karl, Julie A, Wiseman, Roger W, Ericsen, Adam J, Raveendran, Muthuswamy, Harris, R Alan, Muzny, Donna M, Gibbs, Richard A, Rogers, Jeffrey, et al.Improved full-length killer cell immunoglobulin-like receptor transcript discovery in Mauritian.

Racusin, Diana A, Villarreal, Sarah, Antony, Kathleen M, Harris, R Alan, Mastrobattista, Joan, Lee, Wesley, Shamshirsaz, Alireza A, Belfort, Michael, Aagaard, Kjersti MRole of Maternal Serum Alpha-Fetoprotein and Ultrasonography in Contemporary Detection of Spina Bifida. American Journal of Perinatology. Thieme Medical Publishers

Davies, Matthew N, Volta, Manuela, Pidsley, Ruth, Lunnon, Katie, Dixit, Abhishek, Lovestone, Simon, Coarfa, Cristian, Harris, R Alan, Milosavljevic, Aleksandar, Troakes, Claire, et al.Source: Genome Biology (Online Edition). 13 (June 15, 2012): pR43.

Kellermayer, R, Dowd, SE, Harris, RA, Balasa, A, Schaible, TD, Wolcott, RD, Tatevian, N, Szigeti, R, Li, Z, Versalovic, J, et al.The Federation of American Societies for Experimental Biology.

Nagy-Szakal, Dorottya, Mir, Sabina, Harris, Ronald A, Dowd, Scot E, Yamada, Takeshi, Lacorazza, Daniel, Tatevian, Nina, Kellermayer, RichardMicrobiome and Host Factors Communicate Protection Against Acute Murine Colitis Following Omega-6 Fatty Acid Induced Transient Pediatric Obesity.

Harris, R Alan, Shah, Rajesh, Hollister, Emily B, Tronstad, Rune Rose, Hovdenak, Nils, Szigeti, Reka, Versalovic, James, Kellermayer, Richard Colonic mucosal epigenome and microbiome development in children and adolescents .

CONFERENCE PAPER

Orkin, Joseph D, Kuderna, Lukas FK, Hermosilla-Albala, Nuria, Fontsere, Claudia, Aylward, Megan L, Andriaholinirina, Nicole, Balaresque, Patricia, Blair, Mary E, Fausser, Jean-Luc, Gut, Ivo G, et al.(2024). Genomic diversity and demographic history of the non-anthropoid primates. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY. 183. p. 128--128.

Harris, R Alan, Balint, Zsofia Kovacs, Raveendran, Muthuswamy, Michopoulos, Vasiliki, Bachevalier, Jocelyne, Raper, Jessica, Sanchez, Mar, Gunter, Chris, Rogers, Jeffrey(2020). Heritability and preliminary genetic association with social behavior and competence among juvenile rhesus macaques. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 171. p. 115--115.

Thomas, Gregg WC, Wang, Richard J, Harris, R Alan, Raveendran, Muthuswamy, Rogers, Jeffrey, Hahn, Matthew W(2020). Pedigree sequencing shows that life history plays a major role in mutation rate variation in primates. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 171. p. 282--282.

Guevara, Elaine E, Webster, Timothy H, Lawler, Richard R, Bradley, Brenda J, Ranaivonasy, Jeannin, Ratsirarson, Joelisoa, Harris, R Alan, Liu, Yue, Murali, SC, Raveendran, M, et al.(2020). Pervasive genomic evidence for adaptation to a leaf-based diet in sifakas (genus Propithecus). AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 171. p. 109--109.

Blesson, Chellakkan S, Mahadevan, Sangeetha, Tanchico, Daren, Balakrishnan, Meena, Harris, Ronald A, Yallampalli, Chandra(2019). Gestational Programming of Type 2 Diabetes: Does Methylation Play a Role?. REPRODUCTIVE SCIENCES. 26. p. 237A--237A.

Guevara, Elaine E, Webster, Timothy H, Ranaivonasy, Jeannin, Ratsirarson, Joelisoa, Lawler, Richard R, Bradley, Brenda J, Harris, R Alan, Liu, Yue, Murali, SC, Raveendran, M, et al.(2018). Evolutionary genomics of Verreaux's sifaka (Propithecus verreauxi). AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 165. p. 108--109.

Raveendran, Muthuswamy, Harris, R, Rogers, Jeffrey(2018). Functional genetic variation among rhesus macaques (Macaca mulatta): A newly recognized and powerful tool for research. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 165. p. 221--221.

Rogers, Jeffrey, Harris, R Alan, Raveendran, Muthuswamy, Worley, Kim C(2018). Whole genome sequencing reveals ancient hybridization among baboon (Papio) species. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 165. p. 229--229.

Worley, KCC, Liu, Y, Hughes, DST, Murali, SC, Harris, RA, English, AC, Qin, X, Hampton, OA, Larsen, P, Beck, C, et al.(2016). A diploid personal human genome model for better genomes from diverse sequence data. HUMAN GENOMICS. 10.

Harris, RA, Raveenedran, M, Xue, C, Dahdouli, M, Cox, L, Fan, G, Ferguson, B, Hovarth, J, Johnson, Z, Kanthaswamy, S, et al.(2016). Rhesus macaques exhibit more non-synonymous variation but greater impact of purifying selection than humans. HUMAN GENOMICS. 10.

Racusin, Diana, Villarreal, Sarah, Antony, Kathleen, Harris, RA, Mastrobattista, Joan, Shamshirsaz, Alireza, Belfort, Michael, Aagaard, Kjersti(2015). Detection of Open Neural Tube Defects (ONTD) as an Opportunity for Intervention. REPRODUCTIVE SCIENCES. 22. p. 175A--175A.

Racusin, Diana, Harris, RA, Suter, Melissa, Antony, Kathleen, Aagaard, Kjersti(2015). Differences in Placental Gene Expression in Gestational (GDM) & Type II Diabetics. REPRODUCTIVE SCIENCES. 22. p. 192A--192A.

Below, Jennifer E, Raveendran, Muthuswamy, Harris, Ronald A, Xue, Cheng, Ferguson, Betsy, Kanthaswamy, Sree, Smith, David G, Jolly, Clifford J, Phillips-Conroy, Jane, Muzny, Donna, et al.(2015). IBD estimation, segmental sharing detection, and pedigree reconstruction in non-human primates. GENETIC EPIDEMIOLOGY. 39. (7). p. 532--533.

White, Wendy M, Raghuraman, Sriram, Harris, R Alan, Milosavljevic, Aleksander, Garovic, Vesna(2014). Maternal Leukocyte Methylome Not Associated with Labor or Mode of Delivery. REPRODUCTIVE SCIENCES. 21. (3). p. 382A--382A.

White, Wendy M, Raghuraman, Sriram, Garrett, Angelica, Harris, R Allan, Coarfa, Cristian, Jackson, Andrew R, Roth, Matthew, Sun, Zhifu, Milosavljevic, Aleksandar, Garovic, Vesna D(2013). Detecting Confounding Due to Cellular Heterogeneity in Buffy Coat DNA Methylation Analysis by Comparison with Reference Epigenomes. REPRODUCTIVE SCIENCES. 20. (S 3). p. 158A--158A.

Harris, R Alan, Tardif, Suzette D, Vinar, Tomas, Wildman, Derek E, Rutherford, Julienne, Rogers, Jeffrey, Worley, Kim C, Aagaard, Kjersti M(2013). Evolutionary Genetics of Dizygotic Twinning and Small Body Size in Callitrichine Primates. REPRODUCTIVE SCIENCES. 20. (S 3). p. 154A--154A.

Harris, R Alan, Suter, Melissa, Arndt, Melanie, Hu, Min, Aagaard, Kjersti(2013). Placental whole transcriptome analysis reveals significant differential gene expression patterns among term diabetic gravidae. AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY. 208. (1). p. S34--S34.

Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, Ronald A, Perreira, Tamara N, Lewindon, Peter J, Ramm, Grant A, Shepherd, Ross(2013). The Developmental Origins of Biliary Atresia. Hepatology. 58. (Suppl. 1). p. 801A--801A.

Suter, MA, Harris, RA, Miller, RK, Stodgell, CJ, Rinderknecht, AL, Swanson, J, Walker, CK, Szabo, S, Leuthner, S, Aagaard-Tillery, KM(2012). Next Generation Epigenomics and Transcriptomics in the National Children's Study. BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY. 94. (5). p. 382--382.

Harris, Ronald, Bocock, Philip, Milosavljevic, Aleksandar, Grove, Kevin, Lane, Robert, Aagaard-Tillery, Kjersti(2009). Identification of Global Epigenetic Modifications from a High Fat Maternal (HFM) Diet Using a Comparative Methylation Array. REPRODUCTIVE SCIENCES. 16. (3). p. 98A--99A.

Ahn, Hyo Won, Zhao, Han, Harris, Ronald A, Coarta, Cristian, Milosavljevic, Aleksandar, Morin, Ryan D, Marra, Marco A, Rajkovic, Aleksandar(2009). Massive Parallel Sequencing of Small RNAs from Newborn Mouse Ovaries Identifies Novel miRNAs Preferentially Expressed in the Ovaries. BIOLOGY OF REPRODUCTION. p. 177--178.

Liu, Yue, Harris, R Alan, Qin, Xiang, Richards, Stephen, Rogers, Jeffrey, Han, Yi, Vee, Vanessa, Meng, Qingchang, Heaton, Michael P, Smith, Timothy PL, et al.Rambouillet Sheep Transcriptome Annotation Resources. Plant and Animal Genome XXVII Conference (January 12-16, 2019).

BOOK CHAPTER

Rogers, Jeffrey, Harris, R Alan, Raveendran, Muthuswamy, Williams, Lawrence, Worley, Kim C(2023). A reference genome assembly and initial polymorphism data for Aotus nancymaae. Owl Monkeys: Biology, Adaptive Radiation, and Behavioral Ecology of the Only Nocturnal Primate in the Americas. p. 251--264. Springer

PREPRINT

R. Alan Harris, Kellie J. Archer, Mark O. Goodarzi, Timothy P. York, Jeffrey Rogers, Andrea Dunaif, Jan McAllister, Jerome F Strauss, III (2022). Loci on chromosome 12q13.2 encompassing ERBB3, PA2G4 and RAB5B are associated with polycystic ovary syndrome .

OTHER

John R. Caskey, Roger W. Wiseman, Julie A. Karl, David A. Baker, Taylor Lee, Muthuswamy Raveendran, R. Alan Harris, Jianhong Hu, Donna M. Muzny, Jeffrey Rogers, et al.(2019). MHC genotyping from rhesus macaque exome sequences . Cold Spring Harbor Laboratory

Harris, R Alan, Ferrari, Francesca, Ben-Shachar, Shay, Wang, Xiaoling, Saade, George, Van den Veyver, Ignatia, Facchinetti, Fabio, Aagaard-Tillery, Kjersti(2012). Genome-Wide Array-Based Copy Number Profiling in Human Placentas From Unexplained Stillbirths EDITORIAL COMMENT. OBSTETRICAL & GYNECOLOGICAL SURVEY. 67. (2). p. 84--86. LIPPINCOTT WILLIAMS \& WILKINS 530 WALNUT ST, PHILADELPHIA, PA 19106-3621 USA

DISSERTATION THESIS

Harris, Ronald Alan(2007). Comparative Genomics of Primates.