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Norway

USD 100 /hr

PhD Scientist | Expert in High-Dimensional Single-Cell Analysis | Machine Learning for Predictive Immunology

Profile Summary

I am a Research Scientist currently based at the Norwegian Institute of Public Health (NIPH) with over 15 years of experience in life sciences and computational modeling. My expertise lies at the intersection of complex human immunology and advanced data science, specifically focusing on how the immune system responds to vaccines and infections. Throughout my career, including a 4-year Postdoctoral Fellowship at the National Institutes of Health (NIH) in the USA, I have specialized in translating high-dimensional datasets into actionable biological insights. I leverage multiparameter flow cytometry and mass cytometry (CyTOF) alongside machine learning pipelines to identify disease-specific signatures and predictive biomarkers. I have a proven track record of high-impact research, with publications in top-tier journals such as Nature Reviews Immunology, Science, and npj Vaccines. I am available for global consulting projects involving: Bioinformatics & ML: Designing and executing machine learning pipelines for complex biological data. Experimental Design: Optimization of high-dimensional single-cell assays (CyTOF/Flow Cytometry). Scientific Communication: Advanced manuscript editing, grant proposal strategy, and technical white paper development. Data Interpretation: Statistical modeling of host immune responses and cytokine signaling. I am passionate about helping biotech startups and academic labs bridge the gap between "big data" collection and meaningful clinical discovery."

Subject Matter Expertise

• ★ Basic Immunology
• ★ Machine Learning
• ★ Cytometry
• ☆ Cell Biology
• ☆ Data Analysis
• ☆ Python
• ☆ R
• ☆ Infectious Disease
• ☆ Viral Diseases
• ☆ COVID-19
• ☆ Technical & Scientific Writing

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Medical Writing, Technical Writing, General Proofreading & Editing

Research Gray Literature Search, Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Processing, Image Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Processing, Data Insights

Work Experience

Scientist

Norwegian Institute of Public Health

April 2021 - Present

Postdoctoral fellow

National Cancer Institute

November 2016 - March 2021

Education

PhD (Infectious Disease Biology)

Institute of Life Sciences

October 2008 - September 2016

Certifications

• none

  None

  January 2026 - January 2026

Publications

PREPRINT

Ratnadeep Mukherjee, Linn Eggesbø, Asia-Sophia Wolf, Ingrid Kjønstad, Guri Solum, Anthony Ravussin, Sabin Bhandari, Anna Robertson, Per Magnus, Lill-Iren Schou Trogstad, et al. (2024). Mass cytometry reveals cellular correlates of immune response heterogeneity to SARS-CoV-2 vaccination in the elderly .

Ratnadeep Mukherjee, Amir Erez, Alexandre Day, Pankaj Mehta, Grégoire Altan-Bonnet(2019). Quantifying the dynamics of hematopoiesis by in vivo IdU pulse-chase, mass cytometry and mathematical modeling . Cold Spring Harbor Laboratory

JOURNAL ARTICLE

Parida, J.R., Kumar, S., Ahmed, S., Chaurasia, S., Mukherjee, R., Singh, R., Ravindran, B., Aggarwal, A., Misra, R.(2021). Reactive arthritis and undifferentiated peripheral spondyloarthritis share human leucocyte antigen B27 subtypes and serum and synovial fluid cytokine profiles . Rheumatology (United Kingdom). 60. (6). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3004-3011.

Ratnadeep Mukherjee, Sri Krishna, Frank J. Lowery, Amy R. Copeland, Erol Bahadiroglu, Li Jia, James T. Anibal, Abraham Sachs, Serifat O. Adebola, Devikala Gurusamy, et al.(2020). Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against human cancer . Science. 370. (6522). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1328--1334. American Association for the Advancement of Science ({AAAS})

Krishna, S., Lowery, F.J., Copeland, A.R., Bahadiroglu, E., Mukherjee, R., Jia, L., Anibal, J.T., Sachs, A., Adebola, S.O., Gurusamy, D., et al.(2020). Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against human cancer . Science. 370. (6522). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1328-1334.

Ravell, J.C., Matsuda-Lennikov, M., Chauvin, S.D., Zou, J., Biancalana, M., Deeb, S.J., Price, S., Su, H.C., Notarangelo, G., Jiang, P., et al.(2020). Defective glycosylation and multisystem abnormalities characterize the primary immunodeficiency XMEN disease . Journal of Clinical Investigation. 130. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 507-522.

Ratnadeep Mukherjee, Amir Erez, Grégoire Altan‐Bonnet(2019). Quantifying the Dynamics of Hematopoiesis by In Vivo IdU Pulse‐Chase, Mass Cytometry, and Mathematical Modeling . Cytometry Part A. 95. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1075--1084. Wiley

Altan-Bonnet, G., Mukherjee, R.(2019). Cytokine-mediated communication: a quantitative appraisal of immune complexity . Nature Reviews Immunology. 19. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 205-217.

Erez, A., Mukherjee, R., Altan-Bonnet, G.(2019). Quantifying the Dynamics of Hematopoiesis by In Vivo IdU Pulse-Chase, Mass Cytometry, and Mathematical Modeling . Cytometry Part A. 95. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1075-1084.

Barman, P.K., Mukherjee, R., Prusty, B.K., Suklabaidya, S., Senapati, S., Ravindran, B.(2016). Chitohexaose protects against acetaminophen-induced hepatotoxicity in mice . Cell Death and Disease. 7. (5).

Mukherjee, R., Kanti Barman, P., Kumar Thatoi, P., Tripathy, R., Kumar Das, B., Ravindran, B.(2015). Non-Classical monocytes display inflammatory features: Validation in Sepsis and Systemic Lupus Erythematous . Scientific Reports. 5.

OTHER

Erez, A., Mukherjee, R., Altan-Bonnet, G.(2019). Quantifying the dynamics of hematopoiesis by in vivo IdU pulse-chase, mass cytometry and mathematical modeling . bioRxiv.

K Panda, A., Mukherjee, R., K Das, B., Tripathy, R., K Satapathy, A., Sharma, S., Ravindran, B.(2017). A primate specific loss of function polymorphism in TLR2 gene decreases inflammation and protects humans from organ dysfunction in Malaria . bioRxiv.

Mukherjee, R., Kanti Barman, P., Thatoi, P., Kumar Prusty, B., Tripathy, R., Kumar Das, B., Ravindran, B.(2017). Sepsis: Partial least squares structural equation modelling (PLS-SEM) suggests a critical role for anti-inflammatory responses in clinical severity . bioRxiv.

Mukherjee, R., Singh, D.K., Patra, R., Barman, P.K., Prusty, B.K., Thatoi, P., Tripathy, R., Das, B.K., Ravindran, B.(2016). A novel polymorphism in nitric oxide synthase interacting protein (NOSIP) modulates nitric oxide and mortality in human sepsis . bioRxiv.