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Hire Dr. Rahul P.

Austria

USD 25 /hr

Bioinformatics | Genetics | Quantitative research | Statistics

Profile Summary

I have always been fascinated by biological diversity around us. This led me to pursue PhD. in Population Genetics, with a strong focus on quantitative methods and data driven approaches. Proficient in techniques from Genomics | Population Genetics | Quantitative Genetics | Genome-Wide Association Studies (GWAS) | Quantitative trait loci (QTL) mapping | Statistical methods | Model inference | Bayesian causal analysis | Genotype Phenotype | Scientific project and program management

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Evolutionary Biology
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Genomics
• ☆ Epigenetics
• ☆ DNA Sequencing
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ RNA Sequencing
• ☆ Data Analysis
• ☆ Statistics
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Population Genetics
• ☆ Python
• ☆ LaTex
• ☆ R

Services

• Research
• Data & AI
• Product Development

Research User Research

Data & AI Statistical Analysis, Algorithm Design-Non ML, Big Data Analytics

Product Development Formulation

Work Experience

PhD Fellow

Gregor Mendel Institute

April 2017 - Present

Education

PhD (Population genetics)

Gregor Mendel Institute of Molecular Plant Biology

April 2017 - Present

Dual Degree (Biotechnology)

Indian Institute of Technology Kharagpur

June 2010 - May 2015

Bachelors and Masters

Indian Institute of Technology, Kharagpur

July 2010 - April 2015

Certifications

• PhD

  University of Vienna

  April 2017 - Present

Publications

PREPRINT

Rahul Pisupati, Patrick Hüther, Jörg Hagmann, Adam Nunn, Ioanna Kakoulidou, David Langenberger, Detlef Weigel, Frank Johannes, Sebastian J. Schultheiss, Claude Becker (2022). MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant WGBS data .

OTHER

Rahul Pisupati, Daniela Vergara, Ezra L. Huscher, Kyle G. Keepers, Anna L. Schwabe, Mitchell E. McGlaughlin, Nolan C. Kane(2021). Genomic evidence that governmentally produced Cannabis sativa poorly represents genetic variation available in state markets . Cold Spring Harbor Laboratory

Rahul Pisupati, Ruben Gutzat, Klaus Rembart, Thomas Nussbaumer, Falko Hofmann, Gabriele Bradamante, Nina Daubel, Angelika Gaidora, Nicole Lettner, Mattia Donà, et al.(2018). Stage-specific transcriptomes and DNA methylomes indicate an early and transient loss of transposon control in Arabidopsis shoot stem cells . Cold Spring Harbor Laboratory

JOURNAL ARTICLE

Rahul Pisupati, Ruben Gutzat, Klaus Rembart, Thomas Nussbaumer, Falko Hofmann, Gabriele Bradamante, Nina Daubel, Angelika Gaidora, Nicole Lettner, Mattia Donà, et al.(2020). Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns . The EMBO Journal. 39. (20). {EMBO}

Rahul Pisupati, Daniela Vergara, Nolan C. Kane(2018). Diversity and evolution of the repetitive genomic content in Cannabis sativa . BMC Genomics. 19. (1). Springer Nature

Rahul Pisupati, Ilka Reichardt, Ümit Seren, Pamela Korte, Viktoria Nizhynska, Envel Kerdaffrec, Kristina Uzunova, Fernando A. Rabanal, Daniele L. Filiault, Magnus Nordborg(2017). Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples . Scientific Data. 4. (1). Springer Science and Business Media {LLC}

Mand{\'a}kov{\'a}, Terezie and Thorbj{\"o}rnsson, Hj{\"o}rtur and Pisupati, Rahul and Reichardt, Ilka and Lysak, Martin A and Anamthawat-J{\'o}nsson, Kesara(2017). Icelandic accession of Arabidopsis thaliana confirmed with cytogenetic markers and its origin inferred from whole-genome sequencing.

Pisupati, Rahul and Reichardt, Ilka and Seren, Uemit and Korte, Pamela and Nizhynska, Viktoria and Kerdaffrec, Envel and Uzunova, Kristina and Rabanal, Fernando and Filiault, Daniele L and Nordborg, Magnus(2017). Verification of Arabidopsis stock collections using SNPmatch-an algorithm for genotyping high-plexed samples. bioRxiv. p. 109520. Cold Spring Harbor Labs Journals

BOOK CHAPTER

Sar, Pinaki and Paul, Dhiraj and Sarkar, Angana and Bharadwaj, Rahul and Kazy, Sufia K(2015). Microbiology of Arsenic-Contaminated Groundwater. Microbiology for Minerals, Metals, Materials and the Environment. p. 477--525. CRC Press