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Profile Details
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USD 60 /hr
Hire Dr. Pascal L.
France
USD 60 /hr

Freelance bioinformatician and data scientist | Expert in R

Profile Summary
Subject Matter Expertise
Services
Writing Technical Writing
Research Feasibility Study, Gray Literature Search, Systematic Literature Review, Secondary Data Collection
Consulting Scientific and Technical Consulting
Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization
Product Development Formulation
Work Experience

Post-doc

CNRS, AFMB, Aix-Marseille Université

September 2016 - February 2019

Post-doc

CNRS, LBDV, Villefranche-sur-mer

June 2010 - September 2015

Bioinformatician

Centre Scientifique de Monaco, Monaco

July 2013 - August 2013

Education

PhD

Aix-Marseille 2

September 2006 - June 2010

Magistère de Biologie Moléculaire et Cellulaire

Ecole Normale Supérieure de Lyon (ENS Lyon)

September 2002 - September 2006

Agrégation

Ecole Normale Supérieure de Lyon (ENS Lyon)

September 2005 - June 2006

Certifications
  • Certification details not provided.
Publications
JOURNAL ARTICLE
Artigas, G.Q., Lapébie, P., Leclère, L., Bauknecht, P., Uveira, J., Chevalier, S., Jékely, G., Momose, T., Houliston, E.(2020). A G protein-coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia . PLoS Biology. 18. (3).
Lapébie, P., Lombard, V., Drula, E., Terrapon, N., Henrissat, B.(2019). Bacteroidetes use thousands of enzyme combinations to break down glycans . Nature Communications. 10. (1).
Leclère, L., Horin, C., Chevalier, S., Lapébie, P., Dru, P., Peron, S., Jager, M., Condamine, T., Pottin, K., Romano, S., et al.(2019). The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle . Nature Ecology and Evolution. 3. (5). p. 801-810.
Quiroga Artigas, G., Lapébie, P., Leclère, L., Takeda, N., Deguchi, R., Jékely, G., Momose, T., Houliston, E.(2018). A gonad-expressed opsin mediates light-induced spawning in the jellyfish clytia . eLife. 7.
Terrapon, N., Lombard, V., Drula, É., Lapébie, P., Al-Masaudi, S., Gilbert, H.J., Henrissat, B.(2018). PULDB: The expanded database of Polysaccharide Utilization Loci . Nucleic Acids Research. 46. (D1). p. D677-D683.
Seshadri, R., Leahy, S.C., Attwood, G.T., Teh, K.H., Lambie, S.C., Cookson, A.L., Eloe-Fadrosh, E.A., Pavlopoulos, G.A., Hadjithomas, M., Varghese, N.J., et al.(2018). Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection . Nature Biotechnology. 36. (4). p. 359-367.
Takeda, N., Kon, Y., Artigas, G.Q., Lapébie, P., Barreau, C., Koizumi, O., Kishimoto, T., Tachibana, K., Houliston, E., Deguchi, R.(2018). Identification of jellyfish neuropeptides that act directly as oocyte maturation-inducing hormones . Development (Cambridge). 145. (2).
Wong, M.T., Wang, W., Couturier, M., Razeq, F.M., Lombard, V., Lapebie, P., Edwards, E.A., Terrapon, N., Henrissat, B., Master, E.R.(2017). Comparative metagenomics of cellulose- and poplar hydrolysate-degrading microcosms from gut microflora of the Canadian Beaver (Castor canadensis) and North American moose (Alces americanus) after long-term enrichment . Frontiers in Microbiology. 8. (DEC).
Simion, P., Philippe, H., Baurain, D., Jager, M., Richter, D.J., Di Franco, A., Roure, B., Satoh, N., Quéinnec, É., Ereskovsky, A., et al.(2017). A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals . Current Biology. 27. (7). p. 958-967.
Ricci, L., Chaurasia, A., Lapébie, P., Dru, P., Helm, R.R., Copley, R.R., Tiozzo, S.(2016). Identification of differentially expressed genes from multipotent epithelia at the onset of an asexual development . Scientific Reports. 6.
Ereskovsky, A.V., Borisenko, I.E., Lapébie, P., Gazave, E., Tokina, D.B., Borchiellini, C., Singh, S.R.(2015). Oscarella lobularis (Homoscleromorpha, Porifera) Regeneration: Epithelial morphogenesis and metaplasia . PLoS ONE. 10. (8).
Lapébie, P., Ruggiero, A., Barreau, C., Chevalier, S., Chang, P., Dru, P., Houliston, E., Momose, T.(2014). Differential Responses to Wnt and PCP Disruption Predict Expression and Developmental Function of Conserved and Novel Genes in a Cnidarian . PLoS Genetics. 10. (9).
Ereskovsky, A.V., Dubois, M., Ivanišević, J., Gazave, E., Lapebie, P., Tokina, D., Pérez, T.(2013). Pluri-annual study of the reproduction of two Mediterranean Oscarella species (Porifera, Homoscleromorpha): Cycle, sex-ratio, reproductive effort and phenology . Marine Biology. 160. (2). p. 423-438.
Gazave, E., Lapébie, P., Ereskovsky, A.V., Vacelet, J., Renard, E., Cárdenas, P., Borchiellini, C.(2012). No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera . Hydrobiologia. 687. (1). p. 3-10.
Lapébie, P., Borchiellini, C., Houliston, E.(2011). Dissecting the PCP pathway: One or more pathways?: Does a separate Wnt-Fz-Rho pathway drive morphogenesis? . BioEssays. 33. (10). p. 759-768.
Gazave, E., Lapébie, P., Renard, E., Vacelet, J., Rocher, C., Ereskovsky, A.V., Lavrov, D.V., Borchiellini, C.(2010). Molecular phylogeny restores the supra-generic subdivision of homoscleromorph sponges (Porifera, Homoscleromorpha) . PLoS ONE. 5. (12).
Gazave, E., Lapébie, P., Richards, G.S., Brunet, F., Ereskovsky, A.V., Degnan, B.M., Borchiellini, C., Vervoort, M., Renard, E.(2009). Origin and evolution of the Notch signalling pathway: An overview from eukaryotic genomes . BMC Evolutionary Biology. 9. (1).
Lapébie, P., Gazave, E., Ereskovsky, A., Derelle, R., Bézac, C., Renard, E., Houliston, E., Borchiellini, C.(2009). WNT/β-catenin signalling and epithelial patterning in the homoscleromorph sponge Oscarella . PLoS ONE. 4. (6).
Ereskovsky, A.V., Borchiellini, C., Gazave, E., Ivanisevic, J., Lapébie, P., Perez, T., Renard, E., Vacelet, J.(2009). The Homoscleromorph sponge Oscarella lobularis, a promising sponge model in evolutionary and developmental biology: Model sponge oscarella lobularis . BioEssays. 31. (1). p. 89-97.
Renard, E., Vacelet, J., Gazave, E., Lapébie, P., Borchiellini, C., Ereskovsky, A.V.(2009). Origin of the neuro-sensory system: new and expected insights from sponges . Integrative zoology. 4. (3). p. 294-308.
Gazave, E., Lapébie, P., Renard, E., Bézac, C., Boury-Esnault, N., Vacelet, J., Pérez, T., Manuel, M., Borchiellini, C.(2008). NK homeobox genes with choanocyte-specific expression in homoscleromorph sponges . Development Genes and Evolution. 218. (9). p. 479-489.