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Hire Dr. Partha C.

United Kingdom

USD 30 /hr

Freelance Bioinformatician | Expert in Single Cell & Spatial Transcriptomics + Proteomics

Profile Summary

I am a bioinformatician and Research Associate at the University of Cambridge, specializing in single-cell and spatial multiomics analysis. My work focuses on uncovering the molecular and cellular mechanisms of coronary atherosclerosis by integrating spatial transcriptomics, single-cell data, and clinical insights to build spatio-temporal maps of disease progression. I bring expertise in high-dimensional data analysis, systems biology, lncRNA biology, and repeat elements, developed during my Ph.D. at the Institute of Genomics and Integrative Biology (India). I have a strong track record of combining computational and experimental approaches to address complex biological questions, particularly in immune regulation and disease.

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Proteomics
• ☆ Genomics
• ☆ Data Analysis
• ☆ Image Processing
• ☆ Data Exploration
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Statistics
• ☆ Comparative Analysis
• ☆ Regression Analysis
• ☆ Health Data Analysis

Services

• Writing
• Research
• Consulting
• Data & AI

Writing General Proofreading & Editing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Image Processing, Image Analysis, Data Visualization, Big Data Analytics, Data Processing, Data Insights

Work Experience

Research Associate

University of Cambridge

January 2025 - Present

Senior Research Fellow

CSIR Institute of Genomics & Integrative Biology

September 2022 - November 2024

Junior Research Fellow

CSIR-Institute of Genomics and Integrative Biology

July 2020 - August 2022

Education

Ph.D. (Biological Science)

Academy of Scientific and Innovative Research

August 2020 - November 2024

M.S (Pharm) (Biotechnology)

National Institute of Pharmaceutical Education and Research Guwahati

August 2018 - July 2020

B.Pharm (Pharmaceutical Technology)

Bengal School of Technology

August 2014 - July 2018

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Partha Chattopadhyay, Priyanka Mehta, Aparna Swaminathan, Aanchal Yadav, Uzma Shamim, Rajesh Pandey (2024). Integrative genomics important to understand host–pathogen interactions . Briefings in Functional Genomics.

Partha Chattopadhyay, Priyanka Mehta, Jyoti Soni, Kishore Tardalkar, Meghnad Joshi, Rajesh Pandey (2024). Cell-specific housekeeping role of lncRNAs in COVID-19-infected and recovered patients . NAR Genomics and Bioinformatics.

Partha Chattopadhyay, Priyanka Mehta, Varsha Ravi, Bansidhar Tarai, Sandeep Budhiraja, Rajesh Pandey(2023). SARS-CoV-2 infection severity and mortality is modulated by repeat-mediated regulation of alternative splicing . Microbiology Spectrum. American Society for Microbiology

Partha Chattopadhyay, Janmejay Singh, Anbalagan Anantharaj, Aleksha Panwar, Chitra Rani, Monika Bhardwaj, Parveen Kumar, Priti Devi, Ranjeet Maurya, Pallavi Mishra, et al.(2023). BA.1, BA.2 and BA.2.75 variants show comparable replication kinetics, reduced impact on epithelial barrier and elicit cross-neutralizing antibodies . PLOS Pathogens. 19. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e1011196. Public Library of Science ({PLoS})

Partha Chattopadhyay, Kriti Khare, Manish Kumar, Pallavi Mishra, Alok Anand, Ranjeet Maurya, Rohit Gupta, Shweta Sahni, Ayushi Gupta, Saruchi Wadhwa, et al.(2022). Single-cell multiomics revealed the dynamics of antigen presentation, immune response and T cell activation in the COVID-19 positive and recovered individuals . Frontiers in Immunology. 13. Frontiers Media {SA}

Partha Chattopadhyay, Pallavi Mishra, Priyanka Mehta, Jyoti Soni, Rohit Gupta, Bansidhar Tarai, Sandeep Budhiraja, Rajesh Pandey(2022). Transcriptomic study reveals lncRNA-mediated downregulation of innate immune and inflammatory response in the SARS-CoV-2 vaccination breakthrough infections . Frontiers in Immunology. 13. Frontiers Media {SA}

Partha Chattopadhyay, Priyanka Mehta, Varsha Ravi, Priti Devi, Ranjeet Maurya, Shaista Parveen, Pallavi Mishra, Aanchal Yadav, Aparna Swaminathan, Sheeba Saifi, et al.(2022). Mutational dynamics across VOCs in International travellers and Community transmission underscores importance of Spike-ACE2 interaction . Microbiological Research. 262. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 127099. Elsevier {BV}

Partha Chattopadhyay, Priyanka Mehta, Aparna Swaminathan, Aanchal Yadav, Uzma Shamim, Rajesh Pandey(2022). Integrative genomics important to understand host–pathogen interactions . Briefings in Functional Genomics. Oxford University Press ({OUP})

Partha Chattopadhyay, Pallavi Mishra, Kriti Khare, Aanchal Yadav, Priyanka Mehta, Sheeba Saifi, Aparna Swaminathan, Priti Devi, Shaista Parveen, Akansha Tyagi, et al.(2022). LncRNAs harbouring regulatory motifs within repeat elements modulate immune response towards COVID‐19 disease severity and clinical outcomes . Clinical and Translational Medicine. 12. (7). Wiley

Partha Chattopadhyay, Priti Devi, Ranjeet Maurya, Priyanka Mehta, Uzma Shamim, Aanchal Yadav, Akshay Kanakan, Kriti Khare, Janani Srinivasa Vasudevan, Shweta Sahni, et al.(2022). Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome . Microbiology Spectrum. 10. (3). American Society for Microbiology

Partha Chattopadhyay, Ranjeet Maurya, Uzma Shamim, Priyanka Mehta, Pallavi Mishra, Priti Devi, Aparna Swaminathan, Sheeba Saifi, Kriti Khare, Aanchal Yadav, et al.(2022). Human‐host transcriptomic analysis reveals unique early innate immune responses in different sub‐phenotypes of COVID‐19 . Clinical and Translational Medicine. 12. (6). Wiley

Partha Chattopadhyay, Ranjeet Maurya, Akshay Kanakan, Janani Srinivasa Vasudevan, Rajesh Pandey(2022). Infection outcome needs two to tango: human host and the pathogen . Briefings in Functional Genomics. 21. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 90--102. Oxford University Press ({OUP})

Partha Chattopadhyay, Shanmukh Alle, Akshay Kanakan, Samreen Siddiqui, Akshit Garg, Akshaya Karthikeyan, Priyanka Mehta, Neha Mishra, Priti Devi, Swati Waghdhare, et al.(2022). COVID-19 Risk Stratification and Mortality Prediction in Hospitalized Indian Patients: Harnessing clinical data for public health benefits . PLOS ONE. 17. (3). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e0264785. Public Library of Science ({PLoS})

Partha Chattopadhyay, Akshay Kanakan, Priyanka Mehta, Priti Devi, Sheeba Saifi, Aparna Swaminathan, Ranjeet Maurya, Bansidhar Tarai, Poonam Das, Vinita Jha, et al.(2022). Clinico-Genomic Analysis Reiterates Mild Symptoms Post-vaccination Breakthrough: Should We Focus on Low-Frequency Mutations? . Frontiers in Microbiology. 13. Frontiers Media {SA}

Partha Chattopadhyay, Pratibha Kale, Ekta Gupta, Chhagan Bihari, Niharika Patel, Sheetalnath Rooge, Amit Pandey, Meenu Bajpai, Vikas Khillan, Priti Devi, et al.(2021). Vaccine Breakthrough Infections by SARS-CoV-2 Variants after ChAdOx1 nCoV-19 Vaccination in Healthcare Workers . Vaccines. 10. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 54. {MDPI} {AG}

Partha Chattopadhyay, Pratibha Kale, Ekta Gupta, Chhagan Bihari, Niharika Patel, Sheetalnath Rooge, Amit Pandey, Meenu Bajpai, Vikas Khillan, Priti Devi, et al. (2021). Vaccine Breakthrough Infections by SARS-CoV-2 Variants after ChAdOx1 nCoV-19 Vaccination in Healthcare Workers . Vaccines.

Partha Chattopadhyay, Shikha Bhat, Anuradha Pandey, Akshay Kanakan, Ranjeet Maurya, Janani Srinivasa Vasudevan, Priti Devi, Shimpa Sharma, Rajesh J. Khyalappa, Meghnad G. Joshi, et al.(2021). Learning From Biological and Computational Machines: Importance of SARS-CoV-2 Genomic Surveillance, Mutations and Risk Stratification . Frontiers in Cellular and Infection Microbiology. 11. Frontiers Media {SA}

Partha Chattopadhyay, Pratibha Kale, Ekta Gupta, Chhagan Bihari, Niharika Patel, Sheetalnath Rooge, Amit Pandey, Meenu Bajpai, Vikas Khillan, Priti Devi, et al. (2021). Vaccine Breakthrough Infections by SARS-CoV-2 Variants after ChAdOx1 nCoV-19 Vaccination in Healthcare Workers . Vaccines.

Partha Chattopadhyay, Shweta Sahni, Kriti Khare, Rajesh Pandey (2021). Single-Cell Genomics: Enabling the Functional Elucidation of Infectious Diseases in Multi-Cell Genomes . Pathogens.

Partha Chattopadhyay, Petra Mlcochova, Steven A. Kemp, Mahesh Shanker Dhar, Guido Papa, Bo Meng, Isabella A. T. M. Ferreira, Rawlings Datir, Dami A. Collier, Anna Albecka, et al.(2021). SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion . Nature. 599. (7883). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 114--119. Springer Science and Business Media {LLC}

Partha Chattopadhyay, Shweta Sahni, Kriti Khare, Rajesh Pandey (2021). Single-Cell Genomics: Enabling the Functional Elucidation of Infectious Diseases in Multi-Cell Genomes . Pathogens.

Partha Chattopadhyay, Jafar Sarif, Deblina Raychaudhuri, Ranit D’Rozario, Purbita Bandopadhyay, Praveen Singh, Priyanka Mehta, Md. Asmaul Hoque, Bishnu Prasad Sinha, Manoj Kushwaha, et al.(2021). Plasma Gradient of Soluble Urokinase-Type Plasminogen Activator Receptor Is Linked to Pathogenic Plasma Proteome and Immune Transcriptome and Stratifies Outcomes in Severe COVID-19 . Frontiers in Immunology. 12. Frontiers Media {SA}

Partha Chattopadhyay, Priyanka Mehta, Shanmukh Alle, Anusha Chaturvedi, Aparna Swaminathan, Sheeba Saifi, Ranjeet Maurya, Priti Devi, Ruchi Chauhan, Akshay Kanakan, et al. (2021). Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA Structure . Pathogens.

Partha Chattopadhyay, Priyanka Mehta, Shanmukh Alle, Anusha Chaturvedi, Aparna Swaminathan, Sheeba Saifi, Ranjeet Maurya, Priti Devi, Ruchi Chauhan, Akshay Kanakan, et al. (2021). Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA Structure . Pathogens.

Partha Chattopadhyay, Priti Devi, Azka Khan, Priyanka Mehta, Shweta Sahni, Sachin Sharma, Rajesh Pandey(2021). Co-infections as Modulators of Disease Outcome: Minor Players or Major Players? . Frontiers in Microbiology. 12. Frontiers Media {SA}

Priyanka Mehta and Shweta Sahni and Samreen Siddiqui and Neha Mishra and Pooja Sharma and Sachin Sharma and Akansha Tyagi and Partha Chattopadhyay and A Vivekanand and Priti Devi and Azka Khan and Swati Waghdhare and Sandeep Budhiraja and Bharathram Uppili and Ranjeet Maurya and Vivek Nangia and Uzma Shamim and Pranjal P. Hazarika and Saruchi Wadhwa and Nishu Tyagi and Arun Dewan and Bansidhar Tarai and Poonam Das and Mohammed Faruq and Anurag Agrawal and Sujeet Jha and Rajesh Pandey(2021). Respiratory Co-Infections: Modulators of SARS-CoV-2 Patients’ Clinical Sub-Phenotype . Frontiers in Microbiology. 12. Frontiers Media {SA}

Partha Chattopadhyay, Janani Srinivasa Vasudevan, Rajesh Pandey(2021). Noncoding RNAs: modulators and modulatable players during infection-induced stress response . Briefings in Functional Genomics. Oxford University Press ({OUP})

(2019). ASSESSMENT OF ANTIMICROBIAL PROSPECTIVE OF CRUDE EXTRACTS OF LEAVES, BARK AND FRUITS OF ZIZIPHUSLOTUS L. International Journal of Development Research.

(2019). In-Vitro Antioxidant Activity and Free Radical Scavenging Potential of Phlorizin Derived Sodium Glucose Cotransporter 2 Inhibitor. Journal of Drug Delivery and Therapeutics.

(2018). INVITRO ANTIOXIDANT CAPACITY AND FREE RADICAL SCAVENGING ACTIVITY OF VARIOUS ANTI DEPRESSANT DRUGS.

BOOK CHAPTER

Partha Chattopadhyay, Sheeba Saifi, Aparna Swaminathan, Priti Devi, Saksham Gupta, Aarushi Garg, Saransh Saxena, Shaista Parveen, Rajesh Pandey(2023). A Tour-d’Horizon of microbiota therapeutics for metabolic disorders . Microbiome Therapeutics. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 231--253. Elsevier

Partha Chattopadhyay, Priyanka Mehta, Ranjeet Maurya, Pallavi Mishra, Monika Kumari, Priti Devi, Kriti Khare, Aanchal Yadav, Maansi Srivastava, Uzma Shamim, et al.(2023). Experimental repertoire to elucidate the functional landscape of host–pathogen interactome . Genomic Surveillance and Pandemic Preparedness. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 227--266. Elsevier

Azka Khan and Partha Chattopadhyay and Priti Devi and Rajesh Pandey(2020). Epigenetics of Host–Human Gut Microbiome Interactions . Reference Module in Food Science. Elsevier

OTHER

Partha Chattopadhyay, Pratibha Kale, Ekta Gupta, Chhagan Bihari, Niharika Patel, Sheetalnath Rooge, Amit Pandey, Meenu Bajpai, Vikas Khillan, Priti Devi, et al.(2021). Clinicogenomic analysis of breakthrough infections by SARS CoV2 variants after ChAdOx1 nCoV- 19 vaccination in healthcare workers . Cold Spring Harbor Laboratory