Profile Details

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Hire Dr. Panajot K.

Germany

USD 30 /hr

RNA Regulation & Transcriptomics Expert | Bioinformatics Analysis | ODE Modeling | Python, MATLAB & R

Profile Summary

I am a computational biologist with expertise in RNA regulation, alternative splicing, and kinetic modeling of gene expression. I specialize in RNA-seq and single-cell transcriptomics analysis, focusing on splicing isoforms (retention, skipping, inclusion) and gene regulatory networks. My skills include Python, Matlab and R programming for data analysis and visualization, with experience using tools like MAJIQ, DESeq2, SCENIC+, and custom ODE-based models. I’ve worked on both experimental and computational projects, including transcriptomic responses to TGFβ/SMAD signaling and EMT. I offer custom bioinformatics analyses (RNA-seq, splicing, TF binding), pipeline development, and mathematical modeling services to research labs and biotech clients.

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Biostatistics
• ☆ Mathematical Biology
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Genomics
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ Gene Expression Analysis
• ☆ ChIP-Seq
• ☆ Biophysics
• ☆ Data Collection
• ☆ Bioinformatics
• ☆ Systems Biology

Services

• Writing
• Research
• Data & AI

Writing Technical Writing

Research Scientific and Technical Research

Data & AI Predictive Modeling, Statistical Analysis, Big Data Analytics

Work Experience

University of Stuttgart

- Present

PhD Candidate and Research Assistant

University of Stuttgart

January 2021 - January 2025

Education

Phd

University of Stuttgart

January 2021 - January 2025

Certifications

• ECSEQ RNA-seq Data Analysis

  ECSEQ

  March 2024 - Present

Publications

JOURNAL ARTICLE

Panajot Kristofori, Laura Hartmann, Congxin Li, Kolja Becker, Lorenz Hexemer, Stefan Bohn, Sonja Lenhardt, Sylvia Weiss, Björn Voss, Alexander Loewer, et al. (2025). Transcriptional regulators ensuring specific gene expression and decision-making at high TGFβ doses . Life Science Alliance.

PREPRINT

Panajot Kristofori, Laura Hartmann, Congxin Li, Kolja Becker, Lorenz Hexemer, Stefan Bohn, Sonja Lenhardt, Sylvia Weiss, Björn Voss, Alexander Loewer, et al. (2024). Transcriptional regulators ensuring specific gene expression and decision making at high TGFβ doses .