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Hire Pablo M.

Austria

USD 50 /hr

Bioinformatics | Multi-Omics Integration | PhD MedUni Innsbruck

Profile Summary

I’m a bioinformatician and PhD researcher based in Austria, specializing in multi-omics data integration, machine learning, and pathway-level toxicological modeling. I help research teams, biotech startups, and academic labs make sense of high-dimensional biological data — from raw sequencing to interpretable results. 🔬 What I do best: • Multi-omics analysis (transcriptomics, proteomics, metabolomics, lipidomics) • Dose-response modeling & benchmark dose (BMD) estimation • Pathway & network analysis (KEGG, Reactome, GO, AOPs) • Web tool development (Python, Django, R Shiny) • Scientific writing & visualization for publications and grants I’m completing my PhD at the Medical University of Innsbruck, focusing on systems toxicology and drug response. I’ve co-authored peer-reviewed publications and developed tools for omics-based dose-response modeling. I work with R, Python, Bioconductor, Docker, and cloud bioinformatics. Let’s connect if you need help with multi-omics, ML models, or pathway integration.

Subject Matter Expertise

• ☆ Biostatistics
• ☆ Biochemistry
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Omics
• ☆ Transcriptomics
• ☆ Lipidomics
• ☆ Proteomics
• ☆ Metabolomics
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ RNA Sequencing
• ☆ Bioinformatics
• ☆ Biomarker Discovery
• ☆ R
• ☆ Medical Toxicology

Services

• Research
• Consulting
• Data & AI

Research Fact Checking, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Data Processing

Work Experience

PhD Student

Medizinische Universität Innsbruck Biocenter

September 2021 - Present

Erasmus Traineeship

Medizinische Universität Innsbruck

November 2020 - September 2021

Bioinformatics Research Intern. Final Master's Project

Universitat Jaume I de Castellón

September 2019 - September 2020

Bioinformatics Intern. Metagenomic Pipeline Development

Institut for Integrative System Biology (I2SysBio)

November 2018 - July 2019

Education

Master of Science (MS)

Universitat de València

September 2018 - July 2020

Bachelor of Science (BS)

Universidad de Valencia

September 2014 - June 2018

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Lena Guerrero‐Navarro, Pablo Monfort‐Lanzas, Vinzenz Krichbaumer, Mariana E. G. De Araújo, Jlenia Monfregola, Lukas A. Huber, Andrea Ballabio, Pidder Jansen‐Dürr, Maria Cavinato (2025). TFEB Orchestrates Stress Recovery and Paves the Way for Senescence Induction in Human Dermal Fibroblasts . Aging Cell.

Elena Cristina Rusu, Helena Clavero-Mestres, Mario Sánchez-Álvarez, Marina Veciana-Molins, Laia Bertran, Pablo Monfort-Lanzas, Carmen Aguilar, Javier Camaron, Teresa Auguet (2025). Uncovering hepatic transcriptomic and circulating proteomic signatures in MASH: A meta-analysis and machine learning-based biomarker discovery . Computers in Biology and Medicine.

Stefanie Hofer, Marcel Jenny, Angela Klein, Kathrin Becker, Lucia Parráková, Florian Überall, Markus Ganzera, Dietmar Fuchs, Hubert Hackl, Pablo Monfort-Lanzas, et al. (2025). Myrobalan Fruit Extracts Modulate Immunobiochemical Pathways In Vitro . Antioxidants.

Stefanie Hofer, Marcel Jenny, Angela Klein, Kathrin Becker, Lucia Parráková, Florian Überall, Markus Ganzera, Dietmar Fuchs, Hubert Hackl, Pablo Monfort-Lanzas, et al. (2025). Myrobalan Fruit Extracts Modulate Immunobiochemical Pathways In Vitro . Antioxidants.

Stefanie Hofer, Marcel Jenny, Angela Klein, Kathrin Becker, Lucia Parráková, Florian Überall, Markus Ganzera, Dietmar Fuchs, Hubert Hackl, Pablo Monfort-Lanzas, et al. (2025). Myrobalan Fruit Extracts Modulate Immunobiochemical Pathways In Vitro . Antioxidants.

Pablo Monfort-Lanzas, Katja Rungger, Leonie Madersbacher, Hubert Hackl (2025). Machine learning to dissect perturbations in complex cellular systems . Computational and Structural Biotechnology Journal.

Pablo Monfort-Lanzas, Johanna M. Gostner, Hubert Hackl (2025). Modeling omics dose-response at the pathway level with DoseRider . Computational and Structural Biotechnology Journal.

Raphael Gronauer, Leonie Madersbacher, Pablo Monfort-Lanzas, Gabriel Floriani, Susanne Sprung, Alain Gustave Zeimet, Christian Marth, Heidelinde Fiegl, Hubert Hackl (2024). Integrated immunogenomic analyses of high-grade serous ovarian cancer reveal vulnerability to combination immunotherapy . Frontiers in Immunology.

Rita Hargitai, Lucia Parráková, Tünde Szatmári, Pablo Monfort-Lanzas, Valentina Galbiati, Karine Audouze, Florence Jornod, Yvonne C. M. Staal, Sabina Burla, Aline Chary, et al. (2024). Chemical respiratory sensitization—Current status of mechanistic understanding, knowledge gaps and possible identification methods of sensitizers . Frontiers in Toxicology.

Pablo Monfort-Lanzas, Elena Cristina Rusu, Lucia Parrakova, Cornelia A. Karg, Dorina-Elina Kernbichler, Dietmar Rieder, Peter Lackner, Hubert Hackl, Johanna M. Gostner (2024). ExonSurfer: a web-tool to design primers at exon–exon junctions . BMC Genomics.

Elena Cristina Rusu, Pablo Monfort-Lanzas, Laia Bertran, Andrea Barrientos-Riosalido, Emilia Solé, Razieh Mahmoudian, Carmen Aguilar, Silvia Briansó, Fadel Mohamed, Susana Garcia, et al. (2024). Towards understanding post-COVID-19 condition: A systematic meta-analysis of transcriptomic alterations with sex-specific insights . Computers in Biology and Medicine.

Thomas Jaylet, Thibaut Coustillet, Nicola M. Smith, Barbara Viviani, Birgitte Lindeman, Lucia Vergauwen, Oddvar Myhre, Nurettin Yarar, Johanna M. Gostner, Pablo Monfort-Lanzas, et al. (2024). Comprehensive mapping of the AOP-Wiki database: identifying biological and disease gaps . Frontiers in Toxicology.

L. Parrakova, P. Monfort-Lanzas, J. Tevini, S. Vernardis, M. Hermann, S. Dubrac, H. Jäkel, J. Zeisler, H. Hackl, T.K. Felder, et al. (2023). P14-33: A model to study cellular responses to volatile organic compounds . Toxicology Letters.

Katharina Obermoser, Natascha Brigo, Andrea Schroll, Pablo Monfort-Lanzas, Johanna M. Gostner, Sabine Engl, Simon Geisler, Miriam Knoll, Harald Schennach, Günter Weiss, et al. (2023). Positive Effects of Probiotic Therapy in Patients with Post-Infectious Fatigue . Metabolites.

Pablo Monfort Lanzas, Magdalena Díaz, Cristian Quiroz-Moreno, Erika Rivadeneira, Pablo Castillejo, Vicente Arnau, Wladimiro Díaz, Spiros N. Agathos, Félix J. Sangari, Pablo Jarrín-V, et al.(2023). The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador . Frontiers in Microbiology. 14. Frontiers Media {SA}

Katharina Obermoser, Natascha Brigo, Andrea Schroll, Pablo Monfort-Lanzas, Johanna M. Gostner, Sabine Engl, Simon Geisler, Miriam Knoll, Harald Schennach, Günter Weiss, et al. (2023). Positive Effects of Probiotic Therapy in Patients with Post-Infectious Fatigue . Metabolites.

Maja Taenzer, Judith Löffler-Ragg, Andrea Schroll, Pablo Monfort-Lanzas, Sabine Engl, Günter Weiss, Natascha Brigo, Katharina Kurz (2023). Urine Metabolite Analysis to Identify Pathomechanisms of Long COVID: A Pilot Study . International Journal of Tryptophan Research.

Obermoser, Katharina, Brigo, Natascha, Schroll, Andrea, Monfort-Lanzas, Pablo, Gostner, Johanna M., Engl, Sabine, Geisler, Simon, Knoll, Miriam, Schennach, Harald, Weiss, Günter, et al.(2023). Positive Effects of Probiotic Therapy in Patients with Post-Infectious Fatigue . Metabolites.

Obermoser, K., Brigo, N., Schroll, A., Monfort-Lanzas, P., Gostner, J.M., Engl, S., Geisler, S., Knoll, M., Schennach, H., Weiss, G., et al.(2023). Positive Effects of Probiotic Therapy in Patients with Post-Infectious Fatigue . Metabolites. 13. (5).

Díaz, M., Monfort-Lanzas, P., Quiroz-Moreno, C., Rivadeneira, E., Castillejo, P., Arnau, V., Díaz, W., Agathos, S.N., Sangari, F.J., Jarrín-V, P., et al.(2023). The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador . Frontiers in Microbiology. 14.

(2022). MIO: MicroRNA target analysis system for Immuno-Oncology . Bioinformatics (Oxford, England).

Magdalena D{\'{\i}}az and Cristian Quiroz-Moreno and Pablo Jarr{\'{\i}}n-V and Samuel Piquer-Esteban and Pablo Monfort-Lanzas and Erika Rivadeneira and Pablo Castillejo and Vicente Arnau and Wladimiro D{\'{\i}}az and F{\'{e}}lix J. Sangari and C. Alfonso Molina(2022). Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region . Frontiers in Forests and Global Change. 5. Frontiers Media {SA}

Monfort-Lanzas, P., Gronauer, R., Madersbacher, L., Schatz, C., Rieder, D., Hackl, H.(2022). MIO: microRNA target analysis system for immuno-oncology . Bioinformatics. 38. (14). p. 3665-3667.

Díaz, M., Quiroz-Moreno, C., Jarrín-V, P., Piquer-Esteban, S., Monfort-Lanzas, P., Rivadeneira, E., Castillejo, P., Arnau, V., Díaz, W., Sangari, F.J., et al.(2022). Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region . Frontiers in Forests and Global Change. 5.

PREPRINT

Raphael Gronauer, Leonie Madersbacher, Pablo Monfort-Lanzas, Gabriel Floriani, Susanne Sprung, Alain Gustave Zeimet, Christian Marth, Heidelinde Fiegl, Hubert Hackl (2024). Integrated immunogenomic analyses of high-grade serous ovarian cancer reveal vulnerability to combination immunotherapy .

BOOK CHAPTER

Pablo Monfort-Lanzas, Raphael Gronauer, Melanie Balaz, Gabriel Floriani, Hubert Hackl (2024). Application of artificial intelligence in immuno-oncology . Reference Module in Biomedical Sciences.