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Hire Dr. Onur A.

Germany

Expert in Molecular Biology, Data Analysis, & Microscopy | Specializing in Neuro-immune Research & Cardiac Regeneration

Profile Summary

Over seven years in multidisciplinary research, I bring extensive technical expertise in molecular biology, neuro-immune interactions, and cardiac regeneration. I am proficient in a wide range of laboratory techniques, including confocal and electron microscopy, next-generation sequencing, molecular cloning, cell and molecular assays, and animal models (mouse and zebrafish). My data analysis skills span R, Prism, and large dataset management, enabling in-depth insights from complex biological data. Alongside my technical work, I have published extensively in peer-reviewed journals and presented at international conferences, showcasing my ability to convey sophisticated research findings effectively. My background in designing and teaching university lab courses further enhances my communication and leadership skills in diverse scientific settings.

Subject Matter Expertise

• ★ Molecular Cloning
• ★ Gene Expression Analysis
• ★ Immunohistochemistry
• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Microbiological Assays
• ☆ Biostatistics
• ☆ Biochemistry
• ☆ Immunoassay
• ☆ Biochemical Assays
• ☆ Structural Biology
• ☆ Oxidative Stress & Mitochondrial Function
• ☆ Enzyme Activity Assays
• ☆ Binding Assays
• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Synthetic Genomics
• ☆ Recombinant DNA
• ☆ RNA Synthesis
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ Kinases
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Cytochemistry
• ☆ Cell Signaling Pathways
• ☆ Gene Regulation
• ☆ Biotechnology & Bioengineering
• ☆ Microscopy
• ☆ Cryosectioning
• ☆ Light Microscopy
• ☆ Electron Microscopy
• ☆ Data Analysis
• ☆ Image Processing
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Cell Culture
• ☆ Synthetic Biology
• ☆ Python
• ☆ Excel
• ☆ R

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing, General Proofreading & Editing

Research Meta-Research, Fact Checking, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Image Analysis, Data Visualization

Work Experience

Doctoral Researcher

Max Delbruck Centrum

November 2017 - December 2023

Post doctoral researcher

Max Delbruck Centrum

January 2023 - June 2023

Graduate Researcher

UNAM Bilkent University

January 2015 - October 2017

Education

Doctorate

Freie Universität Berlin - Germany

August 2018 - June 2024

Certifications

• International zebrafish and medaka course

  Karlsruhe Institute of Technology - EZRC

  September 2018 - Present

Publications

JOURNAL ARTICLE

Onur Apaydin, Akerke Altaikyzy, Alessandro Filosa, Suphansa Sawamiphak (2023). Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages . Developmental Cell.

Onur Apaydin, Recep Erdem Ahan, Behide Saltepe, Urartu Seker (2019). Cellular Biocatalysts Using Synthetic Genetic Circuits for Prolonged and Durable Enzymatic Activity . ChemBioChem.

Ismail Çimen, Begüm Kocatürk, Seda Koyuncu, Özlem Tufanlı, Umut I. Onat, Asli D. Yıldırım, Onur Apaydın, Şeyma Demirsoy, Zaliha G. Aykut, Uyen T. Nguyen, et al. (2016). Prevention of atherosclerosis by bioactive palmitoleate through suppression of organelle stress and inflammasome activation . Science Translational Medicine.