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Hire Océane C.

France

USD 60 /hr

Freelance editor and data scientist | PhD in biostatistics and interpretable Machine Learning for genomics

Profile Summary

I am a scientist with expertise in computational and systems biology. I received my PhD from the University of Montpellier, France, on the topic of plant Systems Biology and Gene Regulatory Network Inference. During my postdoc, I employed and developed statistical learning approaches with applications in human Regulatory Genomics. You can find more about my academic career and education in my resume (https://oceane-cassan.com/). I am now working full-time on the creation and the scientific steering of Ephyra Publishing and its academic journal Systems Aging, where I am an editor (https://ephyrapublishing.com/).

Subject Matter Expertise

• ☆ Statistics
• ☆ Bioinformatics
• ☆ Systems Biology
• ☆ Epistemology
• ☆ R
• ☆ Technical & Scientific Writing
• ☆ Manuscript & Journal Article Writing
• ☆ Science Communication

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing, General Proofreading & Editing

Research Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Work Experience

Editor

Ephyra Publishing

January 2025 - Present

Postdoc

LIRMM

January 2023 - December 2024

Invited Teaching Assistant

University of Montpellier

January 2019 - August 2024

P.h.D : Statistical inference of regulatory networks in Arabidopsis under climate change

IPSiM

October 2019 - December 2022

Education

MASTER (Informatique - Intelligence artificielle)

Université Claude Bernard Lyon 1

- Present

Engineering degree (Bioinformatics and modelling)

Institut National des Sciences Appliquées de Lyon

- Present

Certifications

• Certification details not provided.

Publications

PREPRINT

Océane Cassan, Julien Raynal, Christophe Vroland, Kayoko Yasuzawa, Tsukasa Kouno, Jen-Chien Chang, Chung-Chau Hon, Jay W. Shin, Masaki Kato, Hazuki Takahashi, et al. (2025). A genome-wide, machine learning-guided exploration of the cis-regulatory code involved in neuronal differentiation .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2024). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2024). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2023). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Charles-Henri Lecellier, Antoine Martin, Laurent Bréhélin, Sophie Lèbre (2023). Optimizing data integration improves Gene Regulatory Network inference in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2023). Natural genetic variation underlying the negative effect of elevated CO2on ionome composition inArabidopsis thaliana .

JOURNAL ARTICLE

Océane Cassan, Adrien Jarretier-Yuste (2025). An inaugural editorial for Systems Aging . Systems Aging.

Océane Cassan, Charles-Henri Lecellier, Antoine Martin, Laurent Bréhélin, Sophie Lèbre, Inanc Birol (2024). Optimizing data integration improves gene regulatory network inference in Arabidopsis thaliana . Bioinformatics.

Océane Cassan, Léa‐Lou Pimparé, Christian Dubos, Alain Gojon, Liên Bach, Sophie Lèbre, Antoine Martin (2023). A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO2 . New Phytologist.

David Séré, Océane Cassan, Fanny Bellegarde, Cécile Fizames, Jossia Boucherez, Geoffrey Schivre, Jacinthe Azevedo, Thierry Lagrange, Alain Gojon, Antoine Martin, et al. (2022). Loss of Polycomb proteins CLF and LHP1 leads to excessive RNA degradation in Arabidopsis . Journal of Experimental Botany.

Oc{\'{e}}ane Cassan and Sophie L{\`{e}}bre and Antoine Martin(2021). Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite . BMC Genomics. 22. (1). Springer Science and Business Media {LLC}

Océane Cassan, Sophie Lèbre, Antoine Martin (2021). Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite . BMC Genomics.

(2019). Probing transcription factor combinatorics in different promoter classes and in enhancers . BMC Genomics.