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Hire LunPing E.

United States

USD 50 /hr

Bioinformatician | GWAS, Variant Calling, Population Genetics, RNA-seq | Crop & Plant Genomics

Profile Summary

Bioinformatician specializing in plant and crop genomics, turning raw sequencing data into clear, publication-ready results. Core services: • Variant calling — SNP/Indel (BWA, GATK) and structural variants (Manta, Delly, LUMPY), with functional annotation • GWAS — full pipeline: BLUE-value phenotypes, kinship/PCA correction, association mapping (GEMMA, GAPIT, EMMAX, TASSEL, mrMLM), Manhattan plots, and PVE estimation • Population genetics & selection scans — diversity (π, Tajima's D), differentiation (Fst), structure (ADMIXTURE, PCA), phylogenetics, LD decay, and selection-sweep detection (XP-CLR, XP-EHH, iHS) • RNA-seq / transcriptome — alignment (HISAT2/STAR), quantification, differential expression (DESeq2/edgeR), and GO/KEGG enrichment I also produce publication-ready scientific figures and reproducible, well-documented pipelines — delivering everything from raw reads to final figures and tables.

Subject Matter Expertise

• ☆ Botany
• ☆ Plant Breeding & Genetics
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ Genome Sequencing
• ☆ R

Services

• Research
• Data & AI

Research Scientific and Technical Research, Systematic Literature Review

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics

Work Experience

Bioinformatics engineer

Beijing Gezhi Boya Biotechnology Co., Ltd.

January 2024 - August 2024

Research Assistant

Institute of Botany, Chinese Academy of Sciences (Yao Zhou's Group)

July 2023 - December 2023

Education

(隆平农学院博士在读)

湖南大学

September 2024 - June 2028

(College of Agronomy)

Anhui Agriculture University

July 2020 - July 2023

(农学院)

Anhui Agriculture University

July 2016 - July 2020

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Lunping Liang, Chaopu Zhang, Linjun Yu, Tingting Sheng, Shuyue Zheng, Shijiao Li, Shuran Zhou, Ting Feng, Fan Zhang, Zhikang Li, et al. (2025). Comprehensive comparison between structural variants and single-nucleotide polymorphism in genomic selection of rice (Oryza sativa L.) . The Crop Journal.

Zhang, C., Li, M., Liang, L., Xiang, J., Zhang, F., Zhang, C., Li, Y., Liang, J., Zheng, T., Zhang, F., et al.(2023). Rice3K56 is a high-quality SNP array for genome-based genetic studies and breeding in rice (Oryza sativa L.) . Crop Journal.

Zhiqi Hao and Sai Ma and Lunping Liang and Ting Feng and Mengyuan Xiong and Shangshu Lian and Jingyan Zhu and Yanjun Chen and Lijun Meng and Min Li(2022). Candidate Genes and Pathways in Rice Co-Responding to Drought and Salt Identified by gcHap Network . International Journal of Molecular Sciences. 23. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 4016. {MDPI} {AG}

Xiang, J., Zhang, C., Wang, N., Liang, Z., Zhenzhen, Z., Liang, L., Yuan, H., Shi, Y.(2022). Genome-Wide Association Study Reveals Candidate Genes for Root-Related Traits in Rice . Current Issues in Molecular Biology. 44. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 4386-4405.

Yuan, Z., Yang, H., Pan, L., Zhao, W., Liang, L., Gatera, A., Tucker, M.R., Xu, D.(2022). Systematic identification and expression profiles of the BAHD superfamily acyltransferases in barley (Hordeum vulgare) . Scientific Reports. 12. (1).

Shi, Y.-Y., Zeng, W., Li, M., Xiang, C., Cui, Y.-R., Chen, M.-Y., Liu, H.-Y., Shen, Q., Li, F., Zhang, G.-G., et al.(2022). The power of selection: Dissecting phenotypic plasticity and linkage drag underlying yield traits of rice (Oryza sativa) using selective introgression . Plant Breeding. 141. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 513-532.

Hao, Z., Ma, S., Liang, L., Feng, T., Xiong, M., Lian, S., Zhu, J., Chen, Y., Meng, L., Li, M.(2022). Candidate Genes and Pathways in Rice Co-Responding to Drought and Salt Identified by gcHap Network . International Journal of Molecular Sciences. 23. (7).