Profile Details

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Hire Dr. Juan Felipe O.

Singapore

USD 50 /hr

bioinformatician and computational biologist with high data visualization emphasis

Profile Summary

I trained as an evolutionary biologist. There I learned how to transform complex problems in useful data structures to plug in to computational tools. Then, in the field of evolutionary genomics, I got skills in data integration and visualization. Nowdays I work for a world known japanese research institute, where I analyze structural genomics data through the lens of functional genomics. I mainly develop my own algorithms and pipelines in Python, though I am looking into Julia and Rust.

Subject Matter Expertise

• ★ Bioinformatics
• ☆ Computational Biology
• ☆ Molecular Biology
• ☆ Next Generation Sequencing (NGS)
• ☆ Data Analysis
• ☆ Python
• ☆ Software Development
• ☆ Cloud Application Development

Services

• Research
• Consulting
• Data & AI

Research Scientific and Technical Research, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

Work Experience

Research Scientist

Cancer Sciences Institute

March 2022 - Present

Special Postdoctoral Fellow

RIKEN

April 2020 - Present

Education

Ph.D. Candidate (Biological Sciences)

Vanderbilt University

May 2014 - Present

M.Sc. Molecular Biology (Molecular Biology)

University of Wyoming

January 2012 - December 2013

Biologist (Biologia)

Universidad Nacional de Colombia

July 2006 - December 2011

Certifications

• Certification details not provided.

Publications

OTHER

Juan F Ortiz, Antonis Rokas(2018). The Genomic Geography and Evolution of Clusters of Tandemly Duplicated Genes in the Human and Mammal Genomes . Cold Spring Harbor Laboratory

JOURNAL ARTICLE

Juan F. Ortiz, Antonis Rokas(2016). CTDGFinder: A Novel Homology-Based Algorithm for Identifying Closely Spaced Clusters of Tandemly Duplicated Genes . Molecular Biology and Evolution. 34. (1). p. 215--229. Oxford University Press ({OUP})

Juan Felipe Ortiz, Johana Carolina Soto, Laura Perlaza-Jiménez, Andrea Ximena Vásquez, Luis Augusto Becerra Lopez-Lavalle, Boby Mathew, Jens Léon, Adriana Jimena Bernal, Agim Ballvora, Camilo Ernesto López(2015). A genetic map of cassava (Manihot esculenta Crantz) with integrated physical mapping of immunity-related genes . BMC Genomics. 16. (1). Springer Science and Business Media {LLC}

Mario L. Arrieta-Ortiz, Luis M. Rodríguez-R, Álvaro L. Pérez-Quintero, Lucie Poulin, Ana C. Díaz, Nathalia Arias Rojas, Cesar Trujillo, Mariana Restrepo Benavides, Rebecca Bart, Jens Boch, et al.(2013). Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151 . PLoS ONE. 8. (11). p. e79704. Public Library of Science ({PLoS})

Kacy Richmond, Patrick Masterson, Jessica Siltberg-Liberles, Juan Felipe Ortiz(2013). Did the prion protein become vulnerable to misfolding after an evolutionary divide and conquer event? . Journal of Biomolecular Structure and Dynamics. 32. (7). p. 1074--1084. Informa {UK} Limited

Juan F. Ortiz, Madolyn L. MacDonald, Patrick Masterson, Vladimir N. Uversky, Jessica Siltberg-Liberles(2013). Rapid Evolutionary Dynamics of Structural Disorder as a Potential Driving Force for Biological Divergence in Flaviviruses . Genome Biology and Evolution. 5. (3). p. 504--513. Oxford University Press ({OUP})

Juan Felipe Ortiz, Luis Guillermo Leal, Álvaro Perez, Andrés Quintero, Ángela Bayona, Anju Gangadharan, David Mackey, Camilo López, Liliana López-Kleine(2013). Identification of Immunity-related Genes in Arabidopsis and Cassava Using Genomic Data . Genomics, Proteomics & Bioinformatics. 11. (6). p. 345--353. Elsevier {BV}

Juan Felipe Ortiz, Brigitte Gavio(2010). Notes on the marine algae of the International Biosphere ReserveSeaflower,Caribbean Colombia II: diversity of drift algae in San Andres island, Caribbean Colombia . Caribbean Journal of Science. 46. (2-3). p. 313--321. University of Puerto Rico at Mayaguez