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USD 60 /hr

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☆☆☆☆☆

Hire Dr. Ilario D.

Spain

USD 60 /hr

I am an expert in the analysis of omics data, I worked both in academia, bioinformatics consultancy and big pharmas.

Profile Summary

Senior Bioinformatician with 10 years of experience in the analysis of omics data, mainly in the fields of neurosciencde, inflammation, and oncology. I have worked both in academia (in center of excellence in Italy, France, and Spain) and in bioinformatics consultancy (Sequentia Biotech and Clarivate). I am actually Senior Scientist in the department of oncology data science in AZ. Skills: bioinformatics: transcriptomics (microarray, bulk and single cell RNA-seq), epigenetics (ChIP-seq and Cut&Run), genomics, proteomics, data visualization (creation o web application and interactive reports), machine learning (classification and prediction throught statistical models and random forest), integration (knowledge graph), downstream analusis (overrepresentation analysis, GSEA, WGCNA) Programming: R, python, shell, SQL Languages: Italian (native); English and Spanish (advanced); French (intermediate); Catalan (elementary)

Subject Matter Expertise

• ★ Transcriptomics
• ★ RNA Sequencing
• ★ Gene & Protein Expression Analysis
• ☆ Molecular Biology
• ☆ Omics
• ☆ Proteomics
• ☆ Genomics
• ☆ Epigenetics
• ☆ ChIP-Seq
• ☆ Neuroscience
• ☆ Computational Neuroscience
• ☆ Cognitive Neuroscience
• ☆ Bioinformatics

Services

• Writing
• Consulting
• Data & AI

Writing Technical Writing, General Proofreading & Editing, Translation

Consulting Healthcare Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Work Experience

Senior Scientist

AstraZeneca

May 2023 - Present

Senior Bioinformatician

Sequentia Biotech

August 2022 - May 2023

Senior postdoctoral scientist

Imim

February 2021 - July 2022

Predoctoral fellow

Institute Curie

October 2011 - April 2022

Senior Postdoc

Center for Genomic Regulation

January 2016 - January 2021

PostdoctoralResearcher

IRCCS San Donato, San Donato Milanese, Italy

June 2016 - December 2016

PhD Fellow

Università Vita Salute San Raffaele

April 2012 - June 2015

Education

PhD in Molecular Medicine

Università Vita-Salute San Raffaele

April 2012 - June 2015

Medical Biotechnolgy and Molecular Medicine

Università degli Studi di Bari

October 2008 - October 2010

Pharmaceutical Biotechnology

Università degli Studi di Bari

October 2005 - July 2008

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Hosseini, E., Bagheri-Hosseinabadi, Z., De Toma, I., Jafarisani, M., Sadeghi, I.(2019). The importance of long non-coding RNAs in neuropsychiatric disorders . Molecular Aspects of Medicine.

Olesti, E., De Toma, I., Ramaekers, J.G., Brunt, T.M., Carbó, M., Fernández-Avilés, C., Robledo, P., Farré, M., Dierssen, M., Pozo, Ó.J., et al.(2019). Metabolomics predicts the pharmacological profile of new psychoactive substances . Journal of Psychopharmacology. 33. (3). p. 347-354.

(2018). Overweighed mice show coordinated homeostatic and hedonic transcriptional response across brain . eneuro.

Olesti E, De Toma I, Ramaekers JG, Brunt TM, Carbó ML, Fernández-Avilés C, Robledo P, Farré M, Dierssen M, Pozo ÓJ, et al.(2018). Metabolomics predicts the pharmacological profile of new psychoactive substances . Journal of psychopharmacology (Oxford, England).

Faundez V, De Toma I, Bardoni B, Bartesaghi R, Nizetic D, de la Torre R, Cohen Kadosh R, Herault Y, Dierssen M, Potier MC, et al.(2018). Translating molecular advances in Down syndrome and Fragile X syndrome into therapies . European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.

De Toma, I., Grabowicz, I.E., Fructuoso, M., Trujillano, D., Wilczyński, B., Dierssen, M.(2018). Overweight mice show coordinated homeostatic and hedonic transcriptional response across brain . eNeuro. 5. (6).

Faundez, V., De Toma, I., Bardoni, B., Bartesaghi, R., Nizetic, D., de la Torre, R., Cohen Kadosh, R., Herault, Y., Dierssen, M., Potier, M.-C., et al.(2018). Translating molecular advances in Down syndrome and Fragile X syndrome into therapies . European Neuropsychopharmacology. 28. (6). p. 675-690.

Toma ID, Gil LM, Ossowski S, Dierssen M(2016). Where Environment Meets Cognition: A Focus on Two Developmental Intellectual Disability Disorders . Neural plasticity.

Voellenkle C, Garcia-Manteiga JM, Pedrotti S, Perfetti A, De Toma I, Da Silva D, Maimone B, Greco S, Fasanaro P, Creo P, et al.(2016). Implication of Long noncoding RNAs in the endothelial cell response to hypoxia revealed by RNA-sequencing . Scientific reports.

Zambrano S, De Toma I, Piffer A, Bianchi ME, Agresti A, eLife, 2016, vol. 5 .

Toma, I.D., Gil, L.M., Ossowski, S., Dierssen, M.(2016). Where Environment Meets Cognition: A Focus on Two Developmental Intellectual Disability Disorders . Neural Plasticity. 2016.

Zambrano, S., de Toma, I., Piffer, A., Bianchi, M.E., Agresti, A.(2016). NF-κB oscillations translate into functionally related patterns of gene expression . eLife. 5. (JANUARY2016).

Voellenkle, C., Garcia-Manteiga, J.M., Pedrotti, S., Perfetti, A., De Toma, I., Da Silva, D., Maimone, B., Greco, S., Fasanaro, P., Creo, P., et al.(2016). Implication of Long noncoding RNAs in the endothelial cell response to hypoxia revealed by RNA-sequencing . Scientific Reports. 6.

De Toma I, Rossetti G, Zambrano S, Bianchi ME, Agresti A, Journal of internal medicine, 2014, vol. 276, no. 5, pp. 454-469 .

De Toma, I., Rossetti, G., Zambrano, S., Bianchi, M.E., Agresti, A.(2014). Nucleosome loss facilitates the chemotactic response of macrophages . Journal of Internal Medicine. 276. (5). p. 454-469.