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USD 65 /hr

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Hire Dr. Hayat H.

France

USD 65 /hr

Freelance bioinformatician - expert in metagenomics, transcriptomics, proteomics. 7+ years of experience,

Profile Summary

I have 8 years of experience in bioinformatics, including 4.5 years in biotech as a Lead Bioinformatician. I completed a PhD in genomics and bioinformatics and a Master’s degree in bioinformatics and biostatistics. I specialize in the development of automated bioinformatics pipelines and multi-omics data analysis. Skills - NGS data analysis (DNA-Seq, RNA-Seq, Tn-seq, 16S, metagenomics, sequence alignment, SNP, phylogeny), Proteomics (mass spectrometry, Olink) - Statistical analysis: alpha & beta diversity, rarefaction curves, DESeq, Limma, DPGP, random forest - Functional analysis: pathway enrichment analysis, HMM models, Gene Ontology, GSEA - Programming: Python, R, RMarkdown, Bash, Snakemake, Nextflow - Version control: Git, GitLab - HPC clusters: Sun Grid Engine (SGE) and SLURM. Access to a Scaleway computing center Contact I am available for data analysis projects, workflow development, and scientific consulting, from study design to results interpretation.

Subject Matter Expertise

• ★ Microbiome Research
• ★ Transcriptomics
• ★ Python
• ☆ Microbiology
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Omics
• ☆ Proteomics
• ☆ Next Generation Sequencing (NGS)
• ☆ R

Services

• Research
• Data & AI

Research Scientific and Technical Research, Systematic Literature Review

Data & AI Statistical Analysis

Work Experience

Researcher in bioinformatics

Bioaster

April 2021 - November 2025

Bioinformatic Scientist (PhD)

INRAE

January 2018 - March 2021

Bioinformatic Scientist

DOE Joint Genome Institute (CAL -USA)

September 2019 - December 2019

BIoinformatician

National Center for Biological Sciences (Bangalore-India)

March 2017 - September 2017

Education

PhD

INRAE

January 2018 - March 2021

Masters in Biotechnology

University of Nantes

September 2015 - September 2017

Bachelor’s in Biological sciences

University of Lebanon

September 2013 - September 2015

Certifications

• Certification details not provided.

Publications

PREPRINT

Olmo F, Hesketh A, Hayat H, Monneuse J, Taylor MC, Costa FC, DaSilva C, Bequet F, Escudi&#233; F, Mercer D, et al.(2025). Transcriptomic and proteomic analysis of quiescent epimastigotes as a resource for investigating <i>Trypanosoma cruzi</i> persistence .

Bissaro B, Kodama S, Hage H, Ribeaucourt D, Haon M, Grisel S, Simaan A, Beisson F, Forget S, Brumer H, et al.(2021). Unravelling the role of alcohol copper radical oxidases in fungal plant pathogens .

Hage H, Rosso M, Tarrago L(2021). Distribution of methionine sulfoxide reductases in fungi and conservation of the free-methionine-<i>R</i>-sulfoxide reductase in multicellular eukaryotes .

JOURNAL ARTICLE

Hayat Hage, Elody Orcel, May Taha, No&#233;mie Boucher, Emilie Chautard, Virginie Courtois, Adrien Saliou (2024). A single workflow for multi-species blood transcriptomics . BMC Genomics.

Hayat Hage, C&#233;line Elie, Magali Perret, Erwin Sentausa, Amy Hesketh, Karen Louis, Asma&#224; Fritah-Lafont, Philippe Leissner, Carole Vachon, Herv&#233; Rostaing, et al. (2023). Comparison of DNA extraction methods for 16S rRNA gene sequencing in the analysis of the human gut microbiome . Scientific Reports.

Hage H, Couillaud J, Salamov A, Loussouarn-Yvon M, Durbesson F, Orme&#241;o E, Grisel S, Duquesne K, Vincentelli R, Grigoriev I, et al.(2023). An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi . Microbial genomics.

Bissaro B, Kodama S, Nishiuchi T, D&#237;az-Rovira AM, Hage H, Ribeaucourt D, Haon M, Grisel S, Simaan AJ, Beisson F, et al.(2022). Tandem metalloenzymes gate plant cell entry by pathogenic fungi . Science advances.

Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, et al.(2022). In vitro Applications of the Terpene Mini-Path 2.0 . Chembiochem : a European journal of chemical biology.

Hayat Hage, Shingo Miyauchi, M&#225;t&#233; Vir&#225;gh, Elodie Drula, Byoungnam Min, Delphine Chaduli, David Navarro, Anne Favel, Manon Norest, Laurence Lesage‐Meessen, et al. (2021). Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay . Environmental Microbiology.

Hage H, Rosso MN, Tarrago L(2021). Distribution of methionine sulfoxide reductases in fungi and conservation of the free-methionine-R-sulfoxide reductase in multicellular eukaryotes . Free radical biology & medicine.

Hayat Hage, Marie-No&#235;lle Rosso (2021). Evolution of Fungal Carbohydrate-Active Enzyme Portfolios and Adaptation to Plant Cell-Wall Polymers . Journal of Fungi.

Hayat Hage, Shingo Miyauchi, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, et al. (2020). Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus <i>Pycnoporus</i> . DNA Research.

Hayat Hage, Shingo Miyauchi, Ana&#239;s Rancon, Elodie Drula, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpo&#235;l-Gimbert, Francisco J. Ruiz-Due&#241;as, et al. (2018). Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass . Biotechnology for Biofuels.