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Hire Dr. Horacio P.
Spain
USD 250 /hr
Grant Writing Consultant specializing in H2020/HORIZON || Science Communicator || Grant reviewer || Research consultant
Profile Summary
Subject Matter Expertise
Services
Writing
Technical Writing,
Copywriting,
Creative Writing
Research
Meta-Research,
Technology Scouting,
Scientific and Technical Research
Consulting
Digital Strategy Consulting,
Scientific and Technical Consulting
Data & AI
Predictive Modeling,
Statistical Analysis,
Algorithm Design-Non ML,
Algorithm Design-ML,
Data Visualization,
Big Data Analytics,
Text Mining & Analytics,
Data Mining,
Data Cleaning,
Data Processing,
Data Insights
Work Experience
Universidad Católica San Antonio de Murcia (UCAM)
February 2013 - Present ![]()
PostdoctoralResearcher
Universidad de Murcia
December 2010 - January 2013
Postdoctoral Researcher / Marie Curie Fellow
Karlsruher Institut für Technologie
January 2007 - November 2010
PhD Candidate and Research Fellow
Universidad de Murcia
October 2001 - December 2006
Education
PhD (Physical Chemistry)
Universidad de Murcia
- Present ![]()
Master Degree in Chemistry (5 years course)
Universidad de Murcia
October 1993 - October 1999
Certifications
- Certification details not provided.
Publications
JOURNAL ARTICLE
Joanna Grzelczyk, Dominik Szwajgier, Ewa Baranowska-Wójcik, Horacio Pérez-Sánchez, Miguel Carmena-Bargueño, Bożena Sosnowska, Grażyna Budryn (2023). Effect of Inhibiting Butyrylcholinesterase Activity Using Fractionated Coffee Extracts Digested In Vitro in Gastrointestinal Tract: Docking Simulation and Calorimetric and Studies . Nutrients.
Joanna Grzelczyk, Dominik Szwajgier, Baranowska-Wójcik, Baranowska, Horacio Pérez-Sánchez, Miguel Carmena-Bargueño, Bożena Sosnowska, Grazyna Budryn (2023). Effect of Inhibiting Butyrylcholinesterase Activity Using Fractionated Coffee Extracts Digested In Vitro in Gastrointestinal Tract: Docking Simulation and Calorimetric and Studies . Nutrients.
Elixabet Díaz-de-Cerio, Francisco Girón, Alfonso Pérez-Garrido, Andreia S. P. Pereira, José Antonio Gabaldón-Hernández, Vito Verardo, Antonio Segura Carretero, Horacio Pérez-Sánchez (2023). Fishing the Targets of Bioactive Compounds from Psidium guajava L. Leaves in the Context of Diabetes . International Journal of Molecular Sciences.
Elixabet Díaz-de-Cerio, Francisco Girón, Alfonso Perez-Garrido, Andreia S. P. Pereira, Jose Antonio Gabaldon, vito verardo, Antonio segura Carretero, Horacio Pérez-Sánchez (2023). Fishing the Targets of Bioactive Compounds from <i>Psidium guajava</i> L. Leaves in the Context of Diabetes . International Journal of Molecular Sciences.
Silvia Montoro-García, Sara Martínez-Sánchez, Miguel Carmena-Bargueño, Horacio Pérez-Sánchez, María Campillo, Camille Oger, Jean-Marie Galano, Thierry Durand, Ángel Gil-Izquierdo, José Antonio Gabaldón (2023). A Phytoprostane from Gracilaria longissima Increases Platelet Activation, Platelet Adhesion to Leukocytes and Endothelial Cell Migration by Potential Binding to EP3 Prostaglandin Receptor . International Journal of Molecular Sciences.
Silvia Montoro-García, Sara Mª Martínez Sánchez, Miguel Carmena-Bargueño, Horacio Pérez-Sánchez, María Campillo, OGER Camille, Jean-Marie Galano, Thierry Durand, Angel Gil-Izquierdo, Jose Antonio Gabaldon (2023). A Phytoprostane from <i>Gracilaria longissima</i> Increases Platelet Activation, Platelet Adhesion to Leukocytes and Endothelial Cell Migration by Potential Binding to EP3 Prostaglandin Receptor . International Journal of Molecular Sciences.
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Joanna Grzelczyk, Grazyna Budryn, Horacio Pérez-Sánchez (2022). Reply to Zarguan et al. Comment on “Budryn et al. Hydroxybenzoic Acids as Acetylcholinesterase Inhibitors: Calorimetric and Docking Simulation Studies. <i>Nutrients</i> 2022, <i>14</i>, 2476” . Nutrients.
Christina D. Papaemmanouil, Jorge Peña-García, Antonio Jesús Banegas-Luna, Androniki D. Kostagianni, Gerothanassis Ioannis, Horacio Pérez-Sánchez, Andreas Tzakos (2022). ANTIAGE-DB: A Database and Server for the Prediction of Anti-Aging Compounds Targeting Elastase, Hyaluronidase, and Tyrosinase . Antioxidants.
Mª Isabel Rodríguez, María Teresa Mercader-Ros, Alfonso Pérez-Garrido, Horacio Pérez-Sánchez, José Antonio Pellicer, Carmen Lucas-Abellán, Silvia Montoro-García, María Josefa Yáñez Gascón, Angel Gil-Izquierdo, Estrella Núñez-Delicado, et al. (2022). Carvacrol and HP-β-Cyclodextrin Complexes: Extensive Characterization and Potential Cytotoxic Effect in Human Colorectal Carcinoma Cells . Pharmaceutics.
Homa Azizian, Simin Forooghian, Arash Amanlou, Horacio Pérez-Sánchez, Massoud Amanlou(2022). Phenothiazine as novel human superoxide dismutase modulators: discovery, optimization, and biological evaluation . Journal of Biomolecular Structure and Dynamics. p. 1--14. Informa {UK} Limited
David Hernández-Silva, Joaquín Cantón-Sandoval, Francisco Juan Martínez-Navarro, Horacio Pérez-Sánchez, Sofia de Oliveira, Victoriano Mulero, Francisca Alcaraz-Pérez, María Luisa Cayuela (2022). Senescence-Independent Anti-Inflammatory Activity of the Senolytic Drugs Dasatinib, Navitoclax, and Venetoclax in Zebrafish Models of Chronic Inflammation . International Journal of Molecular Sciences.
Andrzej Jaśkiewicz, Grażyna Budryn, Miguel Carmena-Bargueño, Horacio Pérez-Sánchez (2022). Evaluation of Activity of Sesquiterpene Lactones and Chicory Extracts as Acetylcholinesterase Inhibitors Assayed in Calorimetric and Docking Simulation Studies . Nutrients.
David Hernández-Silva, Joaquín Cantón-Sandoval, Francisco Juan Martínez Navarro, Horacio Pérez-Sánchez, Sofia de Oliveira, Victoriano Mulero, Francisca Alcaraz Pérez, MARIA L. CAYUELA (2022). Senescence-Independent Anti-Inflammatory Activity of the Senolytic Drugs Dasatinib, Navitoclax, and Venetoclax in Zebrafish Models of Chronic Inflammation . International Journal of Molecular Sciences.
Andrzej Jaśkiewicz, Grazyna Budryn, Miguel Carmena-Bargueño, Horacio Pérez-Sánchez (2022). Evaluation of Activity of Sesquiterpene Lactones and Chicory Extracts as Acetylcholinesterase Inhibitors Assayed in Calorimetric and Docking Simulation Studies . Nutrients.
Vlasios Goulas, Antonio J. Banegas-Luna, Athena Constantinou, Horacio Pérez-Sánchez, Alexandra Barbouti (2022). Computation Screening of Multi-Target Antidiabetic Properties of Phytochemicals in Common Edible Mediterranean Plants . Plants.
Grażyna Budryn, Iwona Majak, Joanna Grzelczyk, Dominik Szwajgier, Alejandro Rodríguez-Martínez, Horacio Pérez-Sánchez (2022). Hydroxybenzoic Acids as Acetylcholinesterase Inhibitors: Calorimetric and Docking Simulation Studies . Nutrients.
Grazyna Budryn, Iwona Majak, Joanna Grzelczyk, Dominik Szwajgier, Alejandro Rodríguez-Martínez, Horacio Pérez-Sánchez (2022). Hydroxybenzoic Acids as Acetylcholinesterase Inhibitors: Calorimetric and Docking Simulation Studies . Nutrients.
Vlasios Goulas, Antonio Jesús Banegas-Luna, Athena Constantinou, Horacio Pérez-Sánchez, ALEXANDRA BARBOUTI (2022). Computation Screening of Multi-Target Antidiabetic Properties of Phytochemicals in Common Edible Mediterranean Plants . Plants.
Putri Hawa Syaifie, Azza Hanif Harisna, Mochammad Arfin Fardiansyah Nasution, Adzani Gaisani Arda, Dwi Wahyu Nugroho, Muhammad Miftah Jauhar, Etik Mardliyati, Nurwenda Novan Maulana, Nurul Taufiqu Rochman, Alfian Noviyanto, et al. (2022). Computational Study of Asian Propolis Compounds as Potential Anti-Type 2 Diabetes Mellitus Agents by Using Inverse Virtual Screening with the DIA-DB Web Server, Tanimoto Similarity Analysis, and Molecular Dynamic Simulation . Molecules.
Gideon A. Gyebi, Oludare M. Ogunyemi, Adedotun A. Adefolalu, Juan F. López-Pastor, Antonio J. Banegas-Luna, Alejandro Rodríguez-Martínez, Horacio Pérez-Sánchez, Adegbenro P. Adegunloye, Olalekan B. Ogunro, Saheed O. Afolabi, et al. (2022). Antimalarial phytochemicals as potential inhibitors of SARS-CoV-2 guanine N7-methyltransferase (nsp 14): an integrated computational approach . Journal of Biomolecular Structure and Dynamics.
Qifeng Bai, Shuo Liu, Yanan Tian, Tingyang Xu, Antonio Jesús Banegas‐Luna, Horacio Pérez‐Sánchez, Junzhou Huang, Huanxiang Liu, Xiaojun Yao (2022). Application advances of deep learning methods for de novo drug design and molecular dynamics simulation . WIREs Computational Molecular Science.
María Paredes-Ramos, Enma Conde Piñeiro, Horacio Pérez-Sánchez, José M. López-Vilariño, Muhammad H. Alu'datt(2022). Evaluation of Natural Peptides to Prevent and Reduce the Novel SARS-CoV-2 Infection . Journal of Food Quality. 2022. p. 1--13. Hindawi Limited
David Zaragoza-Huesca, Carlos Martínez-Cortés, Antonio Jesús Banegas-Luna, Alfonso Pérez-Garrido, Josefina María Vegara-Meseguer, Julia Peñas-Martínez, Maria Carmen Rodenas, Salvador Espín, Horacio Pérez-Sánchez, Irene Martínez-Martínez(2022). Identification of Kukoamine A, Zeaxanthin, and Clexane as New Furin Inhibitors . International Journal of Molecular Sciences. 23. (5). p. 2796. {MDPI} {AG}
David Zaragoza Huesca, Carlos Martínez-Cortés, Antonio Jesús Banegas-Luna, Alfonso Pérez-Garrido, Josefina María Vegara-Meseguer, Julia Peñas-Martínez, Maria Carmen Rodenas, Salvador Espín, Horacio Pérez-Sánchez, Irene Martínez-Martínez (2022). Identification of Kukoamine A, Zeaxanthin, and Clexane as New Furin Inhibitors . International Journal of Molecular Sciences.
Arun Chandra Manivannan, Minguel Carmena Bargueňo, Vinitha Devaraju, Punam Sen, Horacio Pérez-Sánchez, Abdul Kareem Mohammed Ghilan, Abdullah Farasani, Atif Abdulwahab A. Oyouni, Saad Ali S. Aljohani, Othman R. Alzahrani, et al. (2022). Curcumin-Based Inhibitors of Thrombosis and Cancer Metastasis Promoting Factor CLEC 2 from Traditional Medicinal Species Curcuma longa . Evidence-Based Complementary and Alternative Medicine.
S. Puertas-Martín, J.L. Redondo, M.R. Ferrández, H. Pérez-Sánchez, P.M. Ortigosa(2022). MultiPharm-DT: A Multi-Objective Decision Tool for Ligand-Based Virtual Screening Problems . Informatica. p. 1--26. Vilnius University Press
Antonio J Banegas-Luna, Miguel Carmena-Bargueño, Horacio Pérez-Sánchez(2021). Quo vadis artificial intelligence and personalized medicine? . Future Drug Discovery. Future Science Ltd
Antonio Jesús Banegas-Luna, Jorge Peña-García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi Scarpato, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez-Sánchez (2021). Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case Survey . International Journal of Molecular Sciences.
Antonio Jesús Banegas-Luna, Jorge Peña-García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi SCARPATO, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez-Sánchez (2021). Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case Survey . International Journal of Molecular Sciences.
Begoña Alburquerque-González, Ángel Bernabé-García, Manuel Bernabé-García, Javier Ruiz Sanz, Fernando Feliciano López-Calderón, Leonardo Gonnelli, LUCIA BANCI, Jorge Peña-García, Irene Luque, Francisco José Nicolás, et al. (2021). The FDA-Approved Antiviral Raltegravir Inhibits Fascin1-Dependent Invasion of Colorectal Tumor Cells In Vitro and In Vivo . Cancers.
Horacio Pérez-Sánchez, Helena den Haan, Alfonso Pérez-Garrido, Jorge Peña-García, Sandipan Chakraborty, Ilkay Erdogan Orhan, Fatma Sezer Senol Deniz, José Manuel Villalgordo(2021). Combined Structure and Ligand-Based Design of Selective Acetylcholinesterase Inhibitors . Journal of Chemical Information and Modeling. 61. (1). p. 467--480. American Chemical Society ({ACS})
Nirmalya Pradhan, Nasim Akhtar, Barnali Nath, Jorge Peña-García, Anjali Gupta, Horacio Pérez-Sánchez, Sachin Kumar, Debasis Manna(2021). Inhibition of immunosuppressive indoleamine 2,3-dioxygenase by targeting the heme and apo-form . Chemical Communications. 57. (3). p. 395--398. Royal Society of Chemistry ({RSC})
Irina Terekhova, Iliya Kritskiy, Mikhail Agafonov, Roman Kumeev, Carlos Martínez-Cortés, Horacio Pérez-Sánchez(2020). Selective Binding of Cyclodextrins with Leflunomide and Its Pharmacologically Active Metabolite Teriflunomide . International Journal of Molecular Sciences. 21. (23). p. 9102. {MDPI} {AG}
María Isabel Rodríguez-López, María Teresa Mercader-Ros, Carmen Lucas-Abellán, José Antonio Pellicer, Alfonso Pérez-Garrido, Horacio Pérez-Sánchez, María Josefa Yáñez-Gascón, José Antonio Gabaldón, Estrella Núñez-Delicado (2020). Comprehensive Characterization of Linalool-HP-β-Cyclodextrin Inclusion Complexes . Molecules.
Irina Terekhova, Ilya Kritskiy, Mikhail Agafonov, Roman Kumeev, Carlos Martínez-Cortés, Horacio Pérez-Sánchez (2020). Selective Binding of Cyclodextrins with Leflunomide and Its Pharmacologically Active Metabolite Teriflunomide . International Journal of Molecular Sciences.
M. Paredes-Ramos, A. Sabín-López, J. Peña-García, H. Pérez-Sánchez, J.M. López-Vilariño, M.E. Sastre de Vicente(2020). Computational aided acetaminophen – phthalic acid molecularly imprinted polymer design for analytical determination of known and new developed recreational drugs . Journal of Molecular Graphics and Modelling. 100. p. 107627. Elsevier {BV}
Antonio Serrano, Baldomero Imbernón, Horacio Pérez-Sánchez, José M. Cecilia, Andrés Bueno-Crespo, José L. Abellán(2020). QN-Docking: An innovative molecular docking methodology based on Q-Networks . Applied Soft Computing. 96. p. 106678. Elsevier {BV}
María Isabel Rodríguez-López, María Teresa Mercader-Ros, Carmen Lucas-Abellán, Vicente M. Gómez-López, Alfonso Perez-Garrido, Horacio Pérez-Sánchez, María Josefa Yáñez Gascón, Jose Antonio Gabaldon, Estrella Núñez-Delicado (2020). Comprehensive Characterization of Linalool-HP-β-Cyclodextrin Inclusion Complexes . Molecules.
Joanna Grzelczyk, Grażyna Budryn, Horacio Pérez-Sánchez(2020). Evaluation of affinity of bioactive isolates from various coffee extracts through binding with PPAR-γ with the use of isothermal titration calorimetry and docking simulation to prevent antidiabetic effects . Journal of Thermal Analysis and Calorimetry. 142. (2). p. 877--887. Springer Science and Business Media {LLC}
Joanna Grzelczyk, Grażyna Budryn, Horacio Pérez‐Sánchez(2020). Correction to: Evaluation of affinity of bioactive isolates from various coffee extracts through binding with PPAR‐γ with the use of isothermal titration calorimetry and docking simulation to prevent antidiabetic effects . Journal of Thermal Analysis and Calorimetry. 142. (2). p. 889--889. Springer Science and Business Media {LLC}
Horacio Pérez-Sánchez, Helena den-Haan, Jorge Peña-García, Jesús Lozano-Sánchez, María Encarnación Martínez Moreno, Antonia Sánchez-Pérez, Andrés Muñoz, Pedro Ruiz-Espinosa, Andreia S.P. Pereira, Antigoni Katsikoudi, et al.(2020). DIA-DB: A Database and Web Server for the Prediction of Diabetes Drugs . Journal of Chemical Information and Modeling. 60. (9). p. 4124--4130. American Chemical Society ({ACS})
Jonas Karl Christopher N. Agutaya, Ryuto Inoue, Samantha Siew Vin Tsie, Armando T. Quitain, Jorge de la Peña-García, Horacio Pérez-Sánchez, Mitsuru Sasaki, Tetsuya Kida(2020). Metal-Free Synthesis of HMF from Glucose Using the Supercritical CO2–Subcritical H2O–Isopropanol System . Industrial & Engineering Chemistry Research. 59. (38). p. 16527--16538. American Chemical Society ({ACS})
Savíns Puertas-Martín, Antonio J. Banegas-Luna, María Paredes-Ramos, Juana L. Redondo, Pilar M. Ortigosa, Ol’ha O. Brovarets', Horacio Pérez-Sánchez(2020). Is high performance computing a requirement for novel drug discovery and how will this impact academic efforts? . Expert Opinion on Drug Discovery. 15. (9). p. 981--985. Informa {UK} Limited
Sylwester Ślusarczyk, FATMA SEZER SENOL DENIZ, Renata Abel, Łukasz Pecio, Horacio Pérez-Sánchez, José Pedro Cerón-Carrasco, Helena den-Haan, Priyanka Banerjee, Robert Preissner, Edward Krzyżak, et al. (2020). Norditerpenoids with Selective Anti-Cholinesterase Activity from the Roots of <i>Perovskia atriplicifolia </i>Benth . International Journal of Molecular Sciences.
Amjad Hussain, Abdur Rauf, Tareq Abu-Izneid, Muhammad Ibrahim, Shazia Abrar, Haroon Khan, Barkath Ullah, José Pedro Cerón-Carrasco, Horacio Pérez-Sánchez, Muhammad Iqbal Choudhary, et al.(2020). Sedative, Muscle Relaxant-Like Effects, and Molecular Docking Study of Compounds Isolated from Salvia leriifolia . Revista Brasileira de Farmacognosia. 30. (2). p. 257--260. Springer Science and Business Media {LLC}
Juan José Hernández Morante, Inmaculada Díaz Soler, Joaquín S. Galindo Muñoz, Horacio Pérez Sánchez, Mª del Carmen Barberá Ortega, Carlos Manuel Martínez, Juana Mª Morillas Ruiz(2020). Moderate Weight Loss Modifies Leptin and Ghrelin Synthesis Rhythms but Not the Subjective Sensations of Appetite in Obesity Patients . Nutrients. 12. (4). p. 916. {MDPI} {AG}
Hernandez-Morante JJ, Inmaculada Díaz Soler, Joaquín S. Galindo Muñoz, Horacio Pérez-Sánchez, Mª del Carmen Barberá Ortega, CARLOS MANUEL MARTINEZ, Juana Mª Morillas Ruiz (2020). Moderate Weight Loss Modifies Leptin and Ghrelin Synthesis Rhythms but Not the Subjective Sensations of Appetite in Obesity Patients . Nutrients.
João L. de Meirelles, Felipe C. Nepomuceno, Jorge Peña-García, Ricardo Rodríguez Schmidt, Horacio Pérez-Sánchez, Hugo Verli(2020). Current Status of Carbohydrates Information in the Protein Data Bank . Journal of Chemical Information and Modeling. 60. (2). p. 684--699. American Chemical Society ({ACS})
Javier Prades, Baldomero Imbernón, Carlos Reaño, Jorge Peña-García, Jose Pedro Cerón-Carrasco, Federico Silla, Horacio Pérez-Sánchez(2020). Maximizing resource usage in multifold molecular dynamics with rCUDA . The International Journal of High Performance Computing Applications. p. 109434201985713. {SAGE} Publications
Małgorzata Zakłos-Szyda, Grażyna Budryn, Joanna Grzelczyk, Horacio Pérez-Sánchez, Dorota Żyżelewicz(2020). Evaluation of Isoflavones as Bone Resorption Inhibitors upon Interactions with Receptor Activator of Nuclear Factor-κB Ligand (RANKL) . Molecules. 25. (1). p. 206. {MDPI} {AG}
Małgorzata Zakłos-Szyda, Grazyna Budryn, Joanna Grzelczyk, Horacio Pérez-Sánchez, Dorota Żyżelewicz (2020). Evaluation of Isoflavones as Bone Resorption Inhibitors upon Interactions with Receptor Activator of Nuclear Factor-κB Ligand (RANKL) . Molecules.
Andreia S.P. Pereira, Antonio J. Banegas-Luna, Jorge Peña-García, Horacio Pérez-Sánchez, Zeno Apostolides(2019). Evaluation of the Anti-Diabetic Activity of Some Common Herbs and Spices: Providing New Insights with Inverse Virtual Screening . Molecules. 24. (22). p. 4030. {MDPI} {AG}
Andreia S.P. Pereira, Antonio J. Banegas-Luna, Jorge Peña-García, Horacio Pérez-Sánchez, Zeno Apostolides (2019). Evaluation of the Anti-Diabetic Activity of Some Common Herbs and Spices: Providing New Insights with Inverse Virtual Screening . Molecules.
Sara María Martínez-Sánchez, Horacio Pérez-Sánchez, José Antonio Gabaldón, José Abellán-Alemán, Silvia Montoro-García(2019). Multifunctional Peptides from Spanish Dry-Cured Pork Ham: Endothelial Responses and Molecular Modeling Studies . International Journal of Molecular Sciences. 20. (17). p. 4204. {MDPI} {AG}
Juan Pablo Gonzalez-Gutierrez, Martin Hodar, Franco Viscarra, Pablo Paillali, Nicolás Guerra-Díaz, Hernán Pessoa-Mahana, Juan José Hernández-Morantes, Horacio Pérez-Sánchez, Isabel Bermúdez, Miguel Reyes-Parada, et al. (2019). Minimal Structural Changes Determine Full and Partial Nicotinic Receptor Agonist Activity for Nicotine Analogues . Molecules.
Antonio J. Banegas-Luna, José P. Cerón-Carrasco, Savíns Puertas-Martín, Horacio Pérez-Sánchez(2019). BRUSELAS: HPC Generic and Customizable Software Architecture for 3D Ligand-Based Virtual Screening of Large Molecular Databases . Journal of Chemical Information and Modeling. 59. (6). p. 2805--2817. American Chemical Society ({ACS})
Cagin Kandemir-Cavas, Horacio Pérez-Sanchez, Nazli Mert-Ozupek, Levent Cavas(2019). In Silico Analysis of Bioactive Peptides in Invasive Sea Grass Halophila stipulacea . Cells. 8. (6). p. 557. {MDPI} {AG}
Yannick Tauran, José Pedro Cerón-Carrasco, Moez Rhimi, Florent Perret, Beomjoon Kim, Dominique Collard, Anthony W. Coleman, Horacio Pérez-Sánchez(2019). Size and Flexibility Define the Inhibition of the H3N2 Influenza Endonuclease Enzyme by Calix[n]arenes . Antibiotics. 8. (2). p. 73. {MDPI} {AG}
Yannick Tauran, José Pedro Cerón-Carrasco, Moez Rhimi, Florent PERRET, Beomjoon Kim, Dominique Collard, Anthony W. Coleman, Horacio Pérez-Sánchez (2019). Size and Flexibility Define the Inhibition of the H3N2 Influenza Endonuclease Enzyme by Calix[n]arenes . Antibiotics.
Cagin Kandemir-Cavas, Horacio Pérez-Sánchez, Nazli Mert-Ozupek, Levent Cavas (2019). In Silico Analysis of Bioactive Peptides in Invasive Sea Grass <i>Halophila stipulacea</i> . Cells.
Andreia S.P. Pereira, Helena den Haan, Jorge Peña-García, Marién M. Moreno, Horacio Pérez-Sánchez, Zeno Apostolides(2019). Exploring African Medicinal Plants for Potential Anti-Diabetic Compounds with the DIA-DB Inverse Virtual Screening Web Server . Molecules. 24. (10). p. 2002. {MDPI} {AG}
Andreia S.P. Pereira, Helena den Haan, Jorge Peña-García, Marién M. Moreno, Horacio Pérez-Sánchez, Zeno Apostolides (2019). Exploring African Medicinal Plants for Potential Anti-Diabetic Compounds with the DIA-DB Inverse Virtual Screening Web Server . Molecules.
Jesus Banegas-Luna, Antonio, Imbernon, Baldomero, Llanes Castro, Antonio, Perez-Garrido, Alfonso, Ceron-Carrasco, Jose Pedro, Gesing, Sandra, Merelli, Ivan, D'Agostino, Daniele, Perez-Sanchez, Horacio(2019). Advances in distributed computing with modern drug discovery . Expert Opinion on Drug Discovery. 14. (1). p. 9-22.
Dileep, K V, Ashok, S, Remya, C, Dharmendra, K Y, Perez-Sanchez, Horacio, Sadasivan, C(2019). Indole fragments for the design of lead molecules against pancreatitis . Journal of biomolecular structure & dynamics. p. 1-8.
Perez-Sianes, Javier, Perez-Sanchez, Horacio, Diaz, Fernando(2019). Virtual Screening Meets Deep Learning . Current computer-aided drug design. 15. (1). p. 6-28.
Isabel Rodriguez-Lopez, Maria, Teresa Mercader-Ros, Maria, Lopez-Miranda, Santiago, Pellicer, Jose A., Perez-Garrido, Alfonso, Perez-Sanchez, Horacio, Nunez-Delicado, Estrella, Gabaldon, Jose A.(2019). Thorough characterization and stability of HP-beta-cyclodextrin thymol inclusion complexes prepared by microwave technology: A required approach to a successful application in food industry . Journal of the Science of Food and Agriculture. 99. (3). p. 1322-1333.
Grażyna Budryn, Joanna Grzelczyk, Horacio Pérez-Sánchez(2018). Binding of Red Clover Isoflavones to Actin as A Potential Mechanism of Anti-Metastatic Activity Restricting the Migration of Cancer Cells . Molecules. 23. (10). p. 2471. {MDPI} {AG}
Grazyna Budryn, Joanna Grzelczyk, Horacio Pérez-Sánchez (2018). Binding of Red Clover Isoflavones to Actin as A Potential Mechanism of Anti-Metastatic Activity Restricting the Migration of Cancer Cells . Molecules.
Ol’ha O. Brovarets’, Ivan S. Voiteshenko, Horacio Pérez-Sánchez, Dmytro M. Hovorun(2018). A QM/QTAIM detailed look at the Watson–Crick↔wobble tautomeric transformations of the 2-aminopurine·pyrimidine mispairs . Journal of Biomolecular Structure and Dynamics. 36. (7). p. 1649--1665. Informa {UK} Limited
José Pedro Cerón-Carrasco, Horacio Pérez-Sánchez, José Zúñiga, Alberto Requena(2018). Antibodies as Carrier Molecules: Encapsulating Anti-Inflammatory Drugs inside Herceptine . The Journal of Physical Chemistry B. 122. (7). p. 2064--2072. American Chemical Society ({ACS})
Pedro Ceron-Carrasco, Jose, Perez-Sanchez, Horacio, Zuniga, Jose, Requena, Alberto(2018). Antibodies as Carrier Molecules: Encapsulating Anti-Inflammatory Drugs inside Herceptine . Journal of Physical Chemistry B. 122. (7). p. 2064-2072.
Banegas-Luna, Antonio-Jesus, Ceron-Carrasco, Jose P., Perez-Sanchez, Horacio(2018). A review of ligand-based virtual screening web tools and screening algorithms in large molecular databases in the age of big data . Future Medicinal Chemistry. 10. (22). p. 2641-2658.
Bai, Qifeng, Perez-Sanchez, Horacio, Shi, Zhuoyu, Li, Lanlan, Shi, Danfeng, Liu, Huanxiang, Yao, Xiaojun(2018). Computational studies on horseshoe shape pocket of human orexin receptor type 2 and boat conformation of suvorexant by molecular dynamics simulations . Chemical Biology & Drug Design. 92. (1). p. 1221-1231.
Arantes, Pablo Ricardo, Perez-Sanchez, Horacio, Verli, Hugo(2018). Antithrombin conformational modulation by D-myo-inositol 3,4,5,6-tetrakisphosphate (TMI), a novel scaffold for the development of antithrombotic agents . Journal of Biomolecular Structure & Dynamics. 36. (15). p. 4045-4056.
Ghasemi, Fahimeh, Mehridehnavi, Alireza, Fassihi, Afshin, Perez-Sanchez, Horacio(2018). Deep neural network in QSAR studies using deep belief network . Applied Soft Computing. 62. p. 251-258.
Angel Herrera-Rueda, Miguel, Tlahuext, Hugo, Paoli, Paolo, Giacoman-Martinez, Abraham, Cesar Almanza-Perez, Julio, Perez-Sanchez, Horacio, Gutierrez-Hernandez, Abraham, Chavez-Silva, Fabiola, Alberto Dominguez-Mendoza, Elix, Estrada-Soto, Samuel, et al.(2018). Design, synthesis, in vitro, in vivo and in silico pharmacological characterization of antidiabetic N-Boc-L-tyrosine-based compounds . Biomedicine & Pharmacotherapy. 108. p. 670-678.
Contreras, Antonio, V, Llanes, Antonio, Perez-Bernabeu, Alberto, Navarro, Sergio, Perez-Sanchez, Horacio, Lopez-Espin, Jose J., Cecilia, Jose M.(2018). ENMX: An elastic network model to predict the FOREX market evolution . Simulation Modelling Practice and Theory. 86. p. 1-10.
Prabhu, A. Antony Muthu, Fatiha, Madi, Sivaraman, B., Josefa Yanez-Gascon, Maria, Perez-Sanchez, Horacio(2018). Effect of natural and modified cyclodextrins on the excited state proton transfer of 7-hydroxy-4-methylcoumarin . Journal of Molecular Liquids. 268. p. 911-924.
Budryn, Grazyna, Grzelczyk, Joanna, Jaskiewicz, Andrzej, Zyzelewicz, Dorota, Perez-Sanchez, Horacio, Ceron-Carrasco, Jose P.(2018). Evaluation of butyrylcholinesterase inhibitory activity by chlorogenic acids and coffee extracts assed in ITC and docking simulation models . Food Research International. 109. p. 268-277.
Budryn, Grazyna, Galazka-Czarnecka, Ilona, Brzozowska, Ewelina, Grzelczyk, Joanna, Mostowski, Radoslaw, Zyzelewicz, Dorota, Ceron-Carrasco, Jose P., Perez-Sanchez, Horacio(2018). Evaluation of estrogenic activity of red clover (Trifolium pratense L.) sprouts cultivated under different conditions by content of isoflavones, calorimetric study and molecular modelling . Food Chemistry. 245. p. 324-336.
Budryn, Grazyna, Galazka-Czarnecka, Ilona, Brzozowska, Ewelina, Grzelczyk, Joanna, Mostowski, Radoslaw, Zyzelewicz, Dorota, Ceron-Carrasco, Jose P., Perez-Sanchez, Horacio(2018). Evaluation of estrogenic activity of red clover (Trifolium pratense L.) sprouts cultivated under different conditions by content of isoflavones, calorimetric study and molecular modelling (vol 245, pg 324, 2018) . Food Chemistry. 253. p. 323.
Khan, Haroon, Zafar, Muhammad, Den-Haan, Helena, Perez-Sanchez, Horacio, Kamal, Mohammad Amjad(2018). In-silico Studies of Isolated Phytoalkaloid Against Lipoxygenase: Study Based on Possible Correlation . Combinatorial Chemistry & High Throughput Screening. 21. (3). p. 215-221.
Imbernon, Baldomero, Cecilia, Jose M., Perez-Sanchez, Horacio, Gimenez, Domingo(2018). METADOCK: A parallel metaheuristic schema for virtual screening methods . International Journal of High Performance Computing Applications. 32. (6). p. 789-803.
Prabhu, A. Antony Muthu, Fatiha, Madi, Leila, Nouar, Raj, T. Anantha, Navarro-Gonzalez, Inmaculada, Jesus Periago, Maria, Josefa Yanez-Gascon, Maria, Perez-Sanchez, Horacio(2018). Investigation of 3D Contour Map and Intermolecular Interaction of Dopamine with beta-Cyclodextrin and 2-Hydroxypropyl-beta-cyclodextrin . Journal of Solution Chemistry. 47. (3). p. 409-429.
Yadav, Dharmendra K., Saloni, Sharma, Praveen, Misra, Sanjeev, Singh, Harpreet, Mancera, Ricardo L., Kim, Kang, Jang, Cheongyun, Kim, Mi-hyun, Perez-Sanchez, Horacio, et al.(2018). Studies of the benzopyran class of selective COX-2 inhibitors using 3D-QSAR and molecular docking . Archives of Pharmacal Research. 41. (12). p. 1178-1189.
Ahmad, Sajjad, Navid, Afifa, Akhtar, Amina Saleem, Azam, Syed Sikander, Wadood, Abdul, Perez-Sanchez, Horacio(2018). Subtractive Genomics, Molecular Docking and Molecular Dynamics Simulation Revealed LpxC as a Potential Drug Target Against Multi-Drug Resistant Klebsiella pneumoniae . Interdisciplinary sciences, computational life sciences.
Budryn, Grazyna, Grzelczyk, Joanna, Perez-Sanchez, Horacio(2018). Binding of Red Clover Isoflavones to Actin as A Potential Mechanism of Anti-Metastatic Activity Restricting the Migration of Cancer Cells . Molecules. 23. (10).
Brovarets', Ol'ha O., Voiteshenko, Ivan S., Perez-Sanchez, Horacio, Hovorun, Dmytro M.(2018). A QM/QTAIM detailed look at the Watson-Crick <-> wobble tautomeric transformations of the 2-aminopurine.pyrimidine mispairs . Journal of Biomolecular Structure & Dynamics. 36. (7). p. 1649-1665.
Ghasemi, Fahimeh, Mehridehnavi, Alireza, Perez-Garrido, Alfonso, Perez-Sanchez, Horacio(2018). Neural network and deep-learning algorithms used in QSAR studies: merits and drawbacks . Drug Discovery Today. 23. (10). p. 1784-1790.
Ol’ha O. Brovarets’, Horacio Pérez-Sánchez(2017). Whether 2-aminopurine induces incorporation errors at the DNA replication? A quantum-mechanical answer on the actual biological issue . Journal of Biomolecular Structure and Dynamics. 35. (15). p. 3398--3411. Informa {UK} Limited
Brovarets', Ol'ha O., Perez-Sanchez, Horacio(2017). Whether 2-aminopurine induces incorporation errors at the DNA replication? A quantum-mechanical answer on the actual biological issue . Journal of Biomolecular Structure & Dynamics. 35. (15). p. 3398-3411.
Zhang, Xiaohua, Perez-Sanchez, Horacio, Lightstone, Felice C.(2017). A Comprehensive Docking and MM/GBSA Rescoring Study of Ligand Recognition upon Binding Antithrombin . Current Topics in Medicinal Chemistry. 17. (14). p. 1631-1639.
Cano, G., Garcia-Rodriguez, J., Orts, S., Garcia-Garcia, A., Pena-Garcia, J., Perez-Garrido, A., Perez-Sanchez, H.(2017). Drug solubility prediction with support vector machines on graphic processor units . Revista Internacional De Metodos Numericos Para Calculo Y Diseno En Ingenieria. 33. (1-2). p. 97-102.
Ol'ha O. Brovarets', Ivan S. Voiteshenko, Horacio Pérez-Sánchez, Dmytro M. Hovorun(2017). A QM/QTAIM research under the magnifying glass of the DPT tautomerisation of the wobble mispairs involving 2-aminopurine . New Journal of Chemistry. 41. (15). p. 7232--7243. Royal Society of Chemistry ({RSC})
Orhan, Ilkay Erdogan, Kucukboyaci, Nurgun, Calis, Ihsan, Ceron-Carrasco, Jose P., den-Haan, Helena, Pena-Garcia, Jorge, Perez-Sanchez, Horacio(2017). Acetylcholinesterase inhibitory assessment of isolated constituents from Salsola grandis Freitag, Vural & Adiguzel and molecular modeling studies on N-acetyltryptophan . Phytochemistry Letters. 20. p. 373-378.
Brovarets', Ol'ha O., Voiteshenko, Ivan S., Perez-Sanchez, Horacio, Hovorun, Dmytro M.(2017). A QM/QTAIM research under the magnifying glass of the DPT tautomerisation of the wobble mispairs involving 2-aminopurine . New Journal of Chemistry. 41. (15). p. 7232-7243.
(2017). Automatic Selection of Molecular Descriptors using Random Forest: Application to Drug Discovery.
Cano, Gaspar, Garcia-Rodriguez, Jose, Garcia-Garcia, Alberto, Perez-Sanchez, Horacio, Benediktsson, Jon Atli, Thapa, Anil, Barr, Alastair(2017). Automatic selection of molecular descriptors using random forest: Application to drug discovery . Expert Systems With Applications. 72. p. 151-159.
Mohammadinasab, E., Perez-Sanchez, H., Goodarzi, M.(2017). Calculation of the octanol-water partition coefficient of armchair polyhex BN nanotubes . Russian Journal of Physical Chemistry a. 91. (12). p. 2421-2424.
Collado-Gonzalez, Mar, Montalban, Mercedes G., Pena-Garcia, Jorge, Perez-Sanchez, Horacio, Villora, Gloria, Diaz Banos, F. Guillermo(2017). Chitosan as stabilizing agent for negatively charged nanoparticles . Carbohydrate Polymers. 161. p. 63-70.
Warnars, Harco Leslie Hendric Spits, Gaol, Ford Lumban, Sianipar, Nesti Fronika, Abbas, Bahtiar Saleh, Perez Sanchez, Horacio Emilio, IEEE(2017). Easy Understanding for Mining Discriminant Itemset with Emerging Patterns . 2017 1st International Conference on Applied Computer and Communication Technologies (Comcom). p. 17-22.
Vashisht, Deepika, Pandey, Anima, Hermenean, Anca, Josefa Yanez-Gascon, Maria, Perez-Sanchez, Horacio, Kumar, K. Jayaram(2017). Effect of dry heating and ionic gum on the physicochemical and release properties of starch from Dioscorea . International Journal of Biological Macromolecules. 95. p. 557-563.
Perez-Garrido, Alfonso, Giron-Rodriguez, Francisco, Bueno-Crespo, Andres, Soto, Jesus, Perez-Sanchez, Horacio, Morales Helguera, Aliuska(2017). Fuzzy clustering as rational partition method for QSAR . Chemometrics and Intelligent Laboratory Systems. 166. p. 1-6.
Hermenean, Anca, Mariasiu, Teodora, Navarro-Gonzalez, Inmaculada, Vegara-Meseguer, Josefina, Miutescu, Eftimie, Chakraborty, Sandipan, Perez-Sanchez, Horatio(2017). Hepatoprotective activity of chrysin is mediated through TNF-alpha in chemically-induced acute liver damage: An in vivo study and molecular modeling . Experimental and Therapeutic Medicine. 13. (5). p. 1671-1680.
Yar, Muhammad, Shahzadi, Lubna, Farooq, Ariba, Imran, Saima Jalil, Ceron-Carrasco, Jose P., den-Haan, Helena, Kumar, Sanjay, Pena-Garcia, Jorge, Perez-Sanchez, Horacio, Grycova, Aneta, et al.(2017). In vitro modulatory effects of functionalized pyrimidines and piperidine derivatives on Aryl hydrocarbon receptor (AhR) and glucocorticoid receptor (GR) activities . Bioorganic Chemistry. 71. p. 285-293.
Sheriff, Sheik Abdulazeez, Ibrahim, Shaikhussain Shaik, Devaki, Thiruvengadam, Chakraborty, Sandipan, Agarwa, Subhash, Perez-Sanchez, Horacio(2017). Lycopene Prevents Mitochondrial Dysfunction during D-Galactosamine/Lipopolysaccharide-Induced Fulminant Hepatic Failure in Albino Rats . Journal of Proteome Research. 16. (9). p. 3190-3199.
Warnars, Harco Leslie Hendric Spits, Anwar, Nizirwan, Randriatoamanana, Richard, Perez Sanchez, Horacio Emilio(2017). MINING SIMILAR PATTERN WITH ATTRIBUTE ORIENTED INDUCTION HIGH LEVEL EMERGING PATTERN (AOI-HEP) DATA MINING TECHNIQUE . Jurnal Teknologi. 79. (7-2). p. 51-57.
Choudhary, Rajan, Manohar, Prasanth, Vecstaudza, Jana, Josefa Yanez-Gascon, Maria, Perez Sanchez, Horacio, Nachimuthu, Ramesh, Locs, Janis, Swamiappan, Sasikumar(2017). Preparation of nanocrystalline forsterite by combustion of different fuels and their comparative in-vitro bioactivity, dissolution behaviour and antibacterial studies . Materials Science & Engineering C-Materials For Biological Applications. 77. p. 811-822.
Arianto, Rakhmat, Gaol, Ford Lumban, Abdurachman, Edi, Heryadi, Yaya, Warnars, Harco Leslie Hendric Spits, Soewito, Benfano, Perez-Sanchez, Horacio, IEEE(2017). Quality Measurement of Android Messaging Application Based on User Experience in Microblog . 2017 1st International Conference on Applied Computer and Communication Technologies (Comcom). p. 106-110.
Suzuki, Takanori, Ceron-Carrasco, Jose P., Tamaoki, Hitomi, Ishigaki, Yusuke, Katoono, Ryo, Fukushima, Takanori, Perez-Sanchez, Horacio(2017). STEREOSELECTIVE ENCAPSULATION FOR A TRIARYLMETHYLIUM o,o-DIMER BY NATURAL gamma-CYCLODEXTRIN: ORIGIN OF CHIRAL RECOGNITION FOR THE AXIALLY CHIRAL DICATIONIC GUEST . Heterocycles. 94. (6). p. 1123-1132.
Rauf, Abdur, Farooq, Umar, Khan, Ajmal, Ben Hadda, Taibi, Naz, Sadia, Ibrar, Aliya, Jehan, Noor, Ceron-Carrasco, Jose P., den Haan, Helena, Pena-Garcia, Jorge, et al.(2017). Sedative and muscle relaxant activities of diterpenoids from Phlomidoschema parviflorum . Revista Brasileira De Farmacognosia-Brazilian Journal of Pharmacognosy. 27. (5). p. 636-640.
Rauf, Abdur, Ben Hadda, Taibi, Uddin, Ghias, Ceron-Carrasco, Jose P., Pena-Garcia, Jorge, Perez-Sanchez, Horacio, Khan, Haroon, Bawazeer, Saud, Patel, Seema, Mubarak, Mohammad S., et al.(2017). Sedative-hypnotic-like effect and molecular docking of di-naphthodiospyrol from Diospyros lotus in an animal model . Biomedicine & Pharmacotherapy. 88. p. 109-113.
Senol, F. Sezer, Slusarczyk, Sylwester, Matkowski, Adam, Perez-Garrido, Alfonso, Giron-Rodriguez, Francisco, Ceron-Carrasco, Jose P., den-Haan, Helena, Pena-Garcia, Jorge, Perez-Sanchez, Horacio, Domaradzki, Krzysztof, et al.(2017). Selective in vitro and in silico butyrylcholinesterase inhibitory activity of diterpenes and rosmarinic acid isolated from Perovskia atriplicifolia Benth. and Salvia glutinosa L . Phytochemistry. 133. p. 33-44.
Yuan, Shuofeng, Chan, Jasper Fuk-Woo, den-Haan, Helena, Chik, Kenn Ka-Heng, Zhang, Anna Jinxia, Chan, Chris Chung-Sing, Poon, Vincent Kwok-Man, Yip, Cyril Chik-Yan, Mak, Winger Wing-Nga, Zhu, Zheng, et al.(2017). Structure-based discovery of clinically approved drugs as Zika virus NS2B-NS3 protease inhibitors that potently inhibit Zika virus infection in vitro and in vivo . Antiviral Research. 145. p. 33-43.
Anwar, Nizirwan, Warnars, Harco Leslie Hendric Spits, Sanchez, Horacio Emilio Perez, IEEE(2017). Survey of Emerging Patterns . 2017 Ieee International Conference on Cybernetics and Computational Intelligence (Cyberneticscom). p. 11-18.
Perez-Abril, Maravillas, Lucas-Abellan, Carmen, Castillo-Sanchez, Julian, Perez-Sanchez, Horacio, Ceron-Carrasco, Jose P., Fortea, Isabel, Gabaldon, Jose A., Nunez-Delicado, Estrella(2017). Systematic investigation and molecular modelling of complexation between several groups of flavonoids and HP-beta-cyclodextrins . Journal of Functional Foods. 36. p. 122-131.
Ghasemi, Fahimeh, Fassihi, Afshin, Perez-Sanchez, Horacio, Dehnavi, Alireza Mehri(2017). The role of different sampling methods in improving biological activity prediction using deep belief network . Journal of Computational Chemistry. 38. (4). p. 195-203.
Cerón-Carrasco, José P., Coronado-Parra, Teresa, Imbernón-Tudela, Baldomero, Banegas-Luna, Antonio J., Ghasemi, Fahimeh, Vegara-Meseguer, Josefina M., Luque, Irene, Azam, Syed Sikander, Trædal-Henden, Steinar, Pérez-Sánchez, Horacio(2016). Application of Computational Drug Discovery Techniques for Designing New Drugs against Zika Virus. Drug Designing: Open Access. 2016.
Shityakov, Sergey, Salmas, Ramin Ekhteiari, Durdagi, Serdar, Salvador, Ellaine, Papai, Katalin, Josefa Yanez-Gascon, Maria, Perez-Sanchez, Horacio, Puskas, Istvan, Roewer, Norbert, Foerster, Carola, et al.(2016). Characterization, in Vivo Evaluation, and Molecular Modeling of Different Propofol-Cyclodextrin Complexes To Assess Their Drug Delivery Potential at the Blood-Brain Barrier Level . Journal of Chemical Information and Modeling. 56. (10). p. 1914-1922.
Pérez-Sánchez, H., Rezaei, V., Mezhuyev, V., Man, D., Peña-García, J., den-Haan, H., Gesing, S.(2016). Developing science gateways for drug discovery in a grid environment . SpringerPlus. 5. (1).
Perez-Sanchez, Horacio, Rezaei, Vahid, Mezhuyev, Vitaliy, Man, Duhu, Pena-Garcia, Jorge, den-Haan, Helena, Gesing, Sandra(2016). Developing science gateways for drug discovery in a grid environment . Springerplus. 5.
Characterization, In Vivo Evaluation and Molecular Modeling of Different Propofol-Cyclodextrin Complexes to Assess Their Drug Delivery Potential at The Blood-Brain Barrier Level @article{RID:0204191745624-119,
title = {Characterization, In Vivo Evaluation and Molecular Modeling of Different Propofol-Cyclodextrin Complexes to Assess Their Drug Delivery Potential at The Blood-Brain Barrier Level},
journal = {Journal of Chemical Information and Modeling},
year = {2016},
author = {Shityakov, Sergey and Salmas, Ramin Ekhteiari and Durdagi, Serdar and Salvador, Ellaine and Pápai, Katalin and Yañez-Gascón, María Josefa and Perez-Sanchez, Horacio and Puskás, István and Roewer, Norbert and Förster, Carola}
}. Journal of Chemical Information and Modeling.
Paulpandi, R.Q., Ramasamy, S., Paulraj, M.S., Díaz Baños, F.G., Villora, G., Cerón-Carrasco, J.P., Pérez-Sánchez, H., Muthu Vijayan Enoch, I.V.(2016). Enhanced Zn<sup>2+</sup> ion-sensing behavior of a benzothiazole derivative on encapsulation by β-cyclodextrin . RSC Advances. 6. (19). p. 15670-15677.
Paulpandi, Rajathi Queen, Ramasamy, Sivaraj, Paulraj, Mosae Selvakumar, Baños, F. Guillermo Díaz, Villora, G., Cerón-Carrasco, José P., Pérez-Sánchez, Horacio, Enoch, Israel V. Muthu Vijayan(2016). Enhanced Zn 2+ ion-sensing behavior of a benzothiazole derivative on encapsulation by β-cyclodextrin . RSC Advances. 6. (19). p. 15670-15677.
Cerón-Carrasco, J.P., den-Haan, H., Peña-García, J., Contreras-García, J., Pérez-Sánchez, H.(2016). Exploiting the cyclodextrins ability for antioxidants encapsulation: A computational approach to carnosol and carnosic acid embedding . Computational and Theoretical Chemistry. 1077. p. 65-73.
Ceron-Carrasco, Jose P., den-Haan, Helena, Pena-Garcia, Jorge, Contreras-Garcia, Julia, Perez-Sanchez, Horacio(2016). Exploiting the cyclodextrins ability for antioxidants encapsulation: A computational approach to carnosol and carnosic acid embedding . Computational and Theoretical Chemistry. 1077. p. 65-73.
Perez-Sanchez, Horacio, Gesing, Sandra, Merelli, Ivan(2016). High Performance Computing in Drug Discovery . Current Drug Targets. 17. (14). p. 1578-1579.
Citro, Valentina, Pena-Garcia, Jorge, den-Haan, Helena, Perez-Sanchez, Horacio, Del Prete, Rosita, Liguori, Ludovica, Cimmaruta, Chiara, Lukas, Jan, Cubellis, Maria Vittoria, Andreotti, Giuseppina(2016). Identification of an Allosteric Binding Site on Human Lysosomal Alpha-Galactosidase Opens the Way to New Pharmacological Chaperones for Fabry Disease . PLoS One. 11. (10).
Budryn, G., Zaczyńska, D., Pałecz, B., Rachwał-Rosiak, D., Belica, S., den-Haan, H., Peña-García, J., Pérez-Sánchez, H.(2016). Interactions of free and encapsulated hydroxycinnamic acids from green coffee with egg ovalbumin, whey and soy protein hydrolysates . LWT - Food Science and Technology. 65. p. 823-831.
Budryn, Grazyna, Zaczynska, Donata, Palecz, Bartlomiej, Rachwal-Rosiak, Danuta, Belica, Sylwia, den-Haan, Helena, Pena-Garcia, Jorge, Perez-Sanchez, Horacio(2016). Interactions of free and encapsulated hydroxycinnamic acids from green coffee with egg ovalbumin, whey and soy protein hydrolysates . Lwt-Food Science and Technology. 65. p. 823-831.
Terekhova, I., Kumeev, R., Alper, G., Chakraborty, S., Pérez-Sánchez, H., Núñez-Delicado, E.(2016). Molecular recognition of aromatic carboxylic acids by hydroxypropyl-γ-cyclodextrin: Experimental and theoretical evidence . RSC Advances. 6. (55). p. 49567-49577.
Terekhova, Irina, Kumeev, Roman, Alper, Gennady, Chakraborty, Sandipan, Perez-Sanchez, Horacio, Nunez-Delicado, Estrella(2016). Molecular recognition of aromatic carboxylic acids by hydroxypropyl-gamma-cyclodextrin: experimental and theoretical evidence . Rsc Advances. 6. (55). p. 49567-49577.
Yadav, Dharmendra K., Rai, Reeta, Kumar, Naresh, Singh, Surjeet, Misra, Sanjeev, Sharma, Praveen, Shaw, Priyanka, Perez-Sanchez, Horacio, Mancera, Ricardo L., Choi, Eun Ha, et al.(2016). New arylated benzo[h]quinolines induce anti-cancer activity by oxidative stress-mediated DNA damage . Scientific Reports. 6.
Timón, I., Soto, J., Pérez-Sánchez, H., Cecilia, J.M.(2016). Parallel implementation of fuzzy minimals clustering algorithm . Expert Systems with Applications. 48. p. 35-41.
Timon, Isabel, Soto, Jesus, Perez-Sanchez, Horacio, Cecilia, Jose M.(2016). Parallel implementation of fuzzy minimals clustering algorithm . Expert Systems With Applications. 48. p. 35-41.
Martínez-Ballesta, M.C., Pérez-Sánchez, H., Moreno, D.A., Carvajal, M.(2016). Plant plasma membrane aquaporins in natural vesicles as potential stabilizers and carriers of glucosinolates . Colloids and Surfaces B: Biointerfaces. 143. p. 318-326.
del Carmen Martinez-Ballesta, Maria, Perez-Sanchez, Horacio, Moreno, Diego A., Carvajal, Micaela(2016). Plant plasma membrane aquaporins in natural vesicles as potential stabilizers and carriers of glucosinolates . Colloids and Surfaces B-Biointerfaces. 143. p. 318-326.
Cano, G., García-Rodríguez, J., Orts, S., García-García, A., Peña-García, J., Pérez-Garrido, A., Pérez-Sánchez, H.(2016). Predicción de solubilidad de fármacos usando máquinas de soporte vectorial sobre unidades de procesamiento gráfico. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería.
Llanes, Antonio, Muñoz, A., Bueno-Crespo, A., García-Valverde, T., Sánchez, A., Arcas-Túnez, F., Pérez-Sánchez, H., Cecilia, J. M.(2016). Soft Computing Techiniques for the Protein Folding Problem on High Performance Computing Architectures. Current drug targets.
Llanes, Antonio, Munoz, Andres, Bueno-Crespo, Andres, Garcia-Valverde, Teresa, Sanchez, Antonia, Arcas-Tunez, Francisco, Perez-Sanchez, Horacio, Cecilia, Jose M.(2016). Soft Computing Techniques for the Protein Folding Problem on High Performance Computing Architectures . Current Drug Targets. 17. (14). p. 1626-1648.
Brovarets', Ol'ha O., Perez-Sanchez, Horacio, Hovorun, Dmytro M.(2016). Structural grounds for the 2-aminopurine mutagenicity: a novel insight into the old problem of the replication errors . Rsc Advances. 6. (101). p. 99546-99557.
Sharma, V.K., Nandekar, P.P., Sangamwar, A., Pérez-Sánchez, H., Agarwal, S.M.(2016). Structure guided design and binding analysis of EGFR inhibiting analogues of erlotinib and AEE788 using ensemble docking, molecular dynamics and MM-GBSA . RSC Advances. 6. (70). p. 65725-65735.
Sharma, Vishnu K., Nandekar, Prajwal P., Sangamwar, Abhay, Perez-Sanchez, Horacio, Agarwal, Subhash Mohan(2016). Structure guided design and binding analysis EGFR inhibiting analogues of erlotinib and AEE788 using ensemble docking, molecular dynamics and MM-GBSA . Rsc Advances. 6. (70). p. 65725-65735.
López-Miranda, S., Serrano-Martínez, A., Hernández-Sánchez, P., Guardiola, L., Pérez-Sánchez, H., Fortea, I., Gabaldón, J.A., Núñez-Delicado, E.(2016). Use of cyclodextrins to recover catechin and epicatechin from red grape pomace . Food Chemistry. 203. p. 379-385.
López-Miranda, Santiago, Serrano-Martínez, Ana, Hernández-Sánchez, Pilar, Guardiola, Lucía, Pérez-Sánchez, Horacio, Fortea, Isabel, Gabaldón, José Antonio, Núñez-Delicado, Estrella(2016). Use of cyclodextrins to recover catechin and epicatechin from red grape pomace . Food Chemistry. 203. p. 379-385.
Ol'ha O. Brovarets', Horacio Pérez-Sánchez(2016). Whether the amino–imino tautomerism of 2-aminopurine is involved into its mutagenicity? Results of a thorough QM investigation . RSC Advances. 6. (110). p. 108255--108264. Royal Society of Chemistry ({RSC})
Brovarets, Ol'ha O., Perez-Sanchez, Horacio(2016). Whether the amino-imino tautomerism of 2-aminopurine is involved into its mutagenicity? Results of a thorough QM investigation . Rsc Advances. 6. (110). p. 108255-108264.
Garcıa-Martınez, J. M., Garzón, E. M., Cecilia, J. M., Pérez-Sánchez, H., Ortigosa, P. M.(2015). A GPU solution of the HP Protein Folding Problem based on UEGO. IWBBIO 2015. p. 59.
Carretero, Jesus, Garcia-Blas, Javier, Singh, David E., Isaila, Florin, Lastovetsky, Alexey, Fahringer, Thomas, Prodan, Radu, Zangerl, Peter, Symeonidou, Christi, Bosilca, George(2015). Acceleration of MPI Mechanisms for Sustainable HPC Applications. Journal Title Supercomputing Frontiers and Innovations. 2. (2). p. 28-45.
Dileep, K.V., Remya, C., Cerezo, J., Fassihi, A., Pérez-Sánchez, H., Sadasivan, C.(2015). Comparative studies on the inhibitory activities of selected benzoic acid derivatives against secretory phospholipase A<inf>2</inf>, a key enzyme involved in the inflammatory pathway . Molecular BioSystems. 11. (7). p. 1973-1979.
Morshedi, D., Aliakbari, F., Tayaranian-Marvian, A., Fassihi, A., Pan-Montojo, F., Pérez-Sánchez, H.(2015). Cuminaldehyde as the Major Component of Cuminum cyminum, a Natural Aldehyde with Inhibitory Effect on Alpha-Synuclein Fibrillation and Cytotoxicity . Journal of Food Science. 80. (10). p. H2336-H2345.
Dileep, K. V., Remya, C., Cerezo, J., Fassihi, A., Pérez-Sánchez, H., Sadasivan, C.(2015). Comparative studies on the inhibitory activities of selected benzoic acid derivatives against secretory phospholipase A 2, a key enzyme involved in the inflammatory pathway . Molecular BioSystems. 11. (7). p. 1973-1979.
Cano, G., García-Rodríguez, J., Orts, S., García-García, A., Peña-García, J., Pérez-Garrido, A., Pérez-Sánchez, H.(2015). Drug solubility prediction with support vector machines on graphic processor units . Revista Internacional de Metodos Numericos para Calculo y Diseno en Ingenieria.
Budryn, G., Pałecz, B., Rachwał-Rosiak, D., Oracz, J., Zaczyńska, D., Belica, S., Navarro-González, I., Meseguer, J.M.V., Pérez-Sánchez, H.(2015). Effect of inclusion of hydroxycinnamic and chlorogenic acids from green coffee bean in β-cyclodextrin on their interactions with whey, egg white and soy protein isolates . Food Chemistry. 168. p. 276-287.
Budryn, Grazyna, Palecz, Bartlomiej, Rachwal-Rosiak, Danuta, Oracz, Joanna, Zaczynska, Donata, Belica, Sylwia, Navarro-Gonzalez, Inmaculada, Vegara Meseguer, Josefina Maria, Perez-Sanchez, Horacio(2015). Effect of inclusion of hydroxycinnamic and chlorogenic acids from green coffee bean in beta-cyclodextrin on their interactions with whey, egg white and soy protein isolates . Food Chemistry. 168. p. 276-287.
S. Sepehri, H. Pérez-Sánchez A. Fassihi(2015). Hantzsch-Type Dihydropyridines and Biginelli-Type Tetrahydropyrimidines: a Review on the Chemotherapeutic Activities . Journal of Pharmacy and Pharmaceutical Sciences. 18. (1). p. 1-52.
Vegara-Meseguer, J.M., Pérez-Sánchez, H., Araujo, R., Martín, F., Soria, B.(2015). L-Type Ca<sup>2+</sup> Channels and SK Channels in Mouse Embryonic Stem Cells and Their Contribution to Cell Proliferation . Journal of Membrane Biology. 248. (4). p. 671-682.
Vegara-Meseguer, Josefina M., Perez-Sanchez, Horacio, Araujo, Raquel, Martin, Franz, Soria, Bernat(2015). L-Type Ca2+ Channels and SK Channels in Mouse Embryonic Stem Cells and Their Contribution to Cell Proliferation . Journal of Membrane Biology. 248. (4). p. 671-682.
Perez-Garrido, Alfonso, Rivero-Buceta, Virginia, Cano, Gaspar, Kumar, Sanjay, Perez-Sanchez, Horacio, Teijeira Bautista, Marta(2015). Latest QSAR study of adenosine A receptor affinity of xanthines and deazaxanthines . Molecular Diversity. 19. (4). p. 975-989.
Pérez-Garrido, A., Rivero-Buceta, V., Cano, G., Kumar, S., Pérez-Sánchez, H., Bautista, M.T.(2015). Latest QSAR study of adenosine A<inf>2B</inf> receptor affinity of xanthines and deazaxanthines . Molecular Diversity. 19. (4). p. 975-989.
Perez-Sanchez, Horacio(2015). Meet Our Editorial Board Member. Current Bioinformatics. 10. (5). p. 499.
Pérez-Sánchez, H.(2015). Meet our editorial board member . Current Bioinformatics. 10. (5).
Valero, A., Pérez-Sánchez, H.(2015). Multiple MEG and Multiple TMS: Two New Electromagnetic Measurement and Induction Techniques. Journal of Computer Science & Systems Biology. 2015.
Pérez-Sánchez, H., Cano, G., García-Rodríguez, J., Cecilia, J.M.(2015). Virtual screening refined with parallel neural approaches improves drug discovering | Descubrimiento de fármacos basado en cribado virtual refinado con enfoques neuronales paralelos . Revista Internacional de Metodos Numericos para Calculo y Diseno en Ingenieria. 31. (4). p. 207-211.
Perez-Sanchez, H., Cano, G., Garcia-Rodriguez, J., Cecilia, J. M.(2015). Virtual screening refined with parallel neural approaches improves drug discovering . Revista Internacional De Metodos Numericos Para Calculo Y Diseno En Ingenieria. 31. (4). p. 207-211.
Garcia-Martinez, J. M., Garzon, E. M., Cecilia, J. M., Perez-Sanchez, H., Ortigosa, P. M.(2015). An efficient approach for solving the HP protein folding problem based on UEGO . Journal of Mathematical Chemistry. 53. (3). p. 794-806.
Azorín López, Jorge, Fuster Guilló, Andrés, Saval Calvo, Marcelo, García Chamizo, Juan Manuel, Jimeno Morenilla, Antonio, Mora Mora, Higinio, Pujol López, Francisco, Sánchez Romero, José Luis, Pérez Sánchez, Horacio, Orts Escolano, Sergio(2014). El proceso de enseñanza-aprendizaje en la formación interuniversitaria: una experiencia a nivel de máster universitario.
Guerrero Hernández, Ginés David(2014). Evaluación de plataformas de alto rendimiento para el descubrimiento de fármacos. Proyecto de investigación:.
Merelli, I., Pérez-Sánchez, H., Gesing, S., D'Agostino, D.(2014). High-performance computing and big data in omics-based medicine . BioMed Research International. 2014.
Cano, Gaspar, Garcia-Rodriguez, Jose, Perez-Sanchez, Horacio(2014). Improvement of Virtual Screening Predictions using Computational Intelligence Methods . Letters in Drug Design & Discovery. 11. (1). p. 33-39.
Cano, G., García-Rodríguez, J., Pérez-Sánchez, H.(2014). Improvement of virtual screening predictions using computational intelligence methods . Letters in Drug Design and Discovery. 11. (1). p. 33-39.
Pérez-Sánchez, H., Cano, G., García-Rodríguez, J.(2014). Improving drug discovery using hybrid softcomputing methods . Applied Soft Computing Journal. 20. p. 119-126.
Perez-Sanchez, Horacio, Cano, Gaspar, Garcia-Rodriguez, Jose(2014). Improving drug discovery using hybrid softcomputing methods . Applied Soft Computing. 20. p. 119-126.
Cerón-Carrasco, J.P., Cerezo, J., Requena, A., Zuñiga, J., Contreras-García, J., Chavan, S., Manrubia-Cobo, M., Pérez-Sánchez, H.(2014). Labelling Herceptin with a novel oxaliplatin derivative: a computational approach towards the selective drug delivery . Journal of molecular modeling. 20. (9).
Ceron-Carrasco, Jose P., Cerezo, Javier, Requena, Alberto, Zuniga, Jose, Contreras-Garcia, Julia, Chavan, Sonali, Manrubia-Cobo, Miguel, Perez-Sanchez, Horacio(2014). Labelling Herceptin with a novel oxaliplatin derivative: a computational approach towards the selective drug delivery . Journal of Molecular Modeling. 20. (9).
Merelli, I., Pérez-Sánchez, H., Gesing, S., D'Agostino, D.(2014). Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology . Concurrency Computation Practice and Experience. 26. (10). p. 1699-1704.
Bai, Q., Pérez-Sánchez, H., Zhang, Y., Shao, Y., Shi, D., Liu, H., Yao, X.(2014). Ligand induced change of β2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: Insight from molecular dynamics simulation, free energy calculation and Markov state model analysis . Physical Chemistry Chemical Physics. 16. (30). p. 15874-15885.
Bai, Qifeng, Pérez-Sánchez, Horacio, Zhang, Yang, Shao, Yonghua, Shi, Danfeng, Liu, Huanxiang, Yao, Xiaojun(2014). Ligand induced change of β 2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis . Physical Chemistry Chemical Physics. 16. (30). p. 15874-15885.
Navarro-Gonzalez, Inmaculada, Perez-Sanchez, Horacio, Martin-Pozuelo, Gala, Garcia-Alonso, Javier, Jesus Periago, Maria(2014). The Inhibitory Effects of Bioactive Compounds of Tomato Juice Binding to Hepatic HMGCR: In Vivo Study and Molecular Modelling . Plos One. 9. (1).
Pérez-Sánchez, Horacio, Cecilia, J. M., Imbernón-Tudela, Baldomero, Pérez-Garrido, Alfonso, Soto-Iniesta, J.(2014). The Need for an Integrated Computational/Experimental Approach in the Discovery and Design of New Drugs. Drug Designing: Open Access.
Merelli, I., Pérez-Sánchez, H., Gesing, S., D'Agostino, D.(2014). Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives . BioMed Research International. 2014.
Merelli, Ivan, Perez-Sanchez, Horacio, Gesing, Sandra, D'Agostino, Daniele(2014). Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives . Biomed Research International.
Navarro-González, I., Pérez-Sánchez, H., Martín-Pozuelo, G., García-Alonso, J., Periago, M.J.(2014). The inhibitory effects of bioactive compounds of Tomato juice binding to hepatic HMGCR: In vivostudy and molecular modelling . PLoS ONE. 9. (1).
Guerrero, Gines D., Imbernon, Baldomero, Perez-Sanchez, Horacio, Sanz, Francisco, Garcia, Jose M., Cecilia, Jose M.(2014). A Performance/Cost Evaluation for a GPU-Based Drug Discovery Application on Volunteer Computing . Biomed Research International.
Guerrero, G.D., Wallace, R.M., Vázquez-Poletti, J.L., Cecilia, J.M., García, J.M., Mozos, D., Pérez-Sánchez, H.(2014). A performance/cost model for a CUDA drug discovery application on physical and public cloud infrastructures . Concurrency Computation Practice and Experience. 26. (10). p. 1787-1798.
Guerrero, Gines D., Wallace, Richard M., Vazquez-Poletti, Jose L., Cecilia, Jose M., Garcia, Jose M., Mozos, Daniel, Perez-Sanchez, Horacio(2014). A performance/cost model for a CUDA drug discovery application on physical and public cloud infrastructures . Concurrency and Computation-Practice & Experience. 26. (10). p. 1787-1798.
Guerrero, G.D., Imbernón, B., Pérez-Sánchez, H., Sanz, F., García, J.M., Cecilia, J.M.(2014). A performance/cost evaluation for a GPU-based drug discovery application on volunteer computing . BioMed Research International. 2014.
García-Martínez, J.M., Garzón, E.M., Cecilia, J.M., Pérez-Sánchez, H., Ortigosa, P.M.(2014). An efficient approach for solving the HP protein folding problem based on UEGO . Journal of Mathematical Chemistry. 53. (3). p. 794-806.
Guerrero, G.D., Cebrián, J.M., Pérez-Sánchez, H., García, J.M., Ujaldõn, M., Cecilia, J.M.(2014). Toward energy efficiency in heterogeneous processors: Findings on virtual screening methods . Concurrency Computation Practice and Experience. 26. (10). p. 1832-1846.
Guerrero, Gines D., Cebrian, Juan M., Perez-Sanchez, Horacio, Garcia, Jose M., Ujaldon, Manuel, Cecilia, Jose M.(2014). Toward energy efficiency in heterogeneous processors: findings on virtual screening methods . Concurrency and Computation-Practice & Experience. 26. (10). p. 1832-1846.
V. Rezaei, H. Pezeshk H. Pérez-Sánchez(2013). Generalized Baum-Welch Algorithm Based on The Similarity Between Sequences . PLOS ONE.
Zhang, Q., Wang, J., Guerrero, G.D., Cecilia, J.M., García, J.M., Li, Y., Pérez-Sánchez, H., Hou, T.(2013). Accelerated conformational entropy calculations using graphic processing units . Journal of Chemical Information and Modeling. 53. (8). p. 2057-2064.
López-Nicolás, J.M., Escorial Camps, M., Pérez-Sánchez, H., García-Carmona, F.(2013). Physicochemical and thermodynamic characterization of the encapsulation of methyl jasmonate by natural and modified cyclodextrins using reversed-phase high-pressure liquid chromatography . Journal of Agricultural and Food Chemistry. 61. (47). p. 11347-11354.
Manuel Lopez-Nicolas, Jose, Escorial Camps, Marta, Perez-Sanchez, Horacio, Garcia-Carmona, Francisco(2013). Physicochemical and Thermodynamic Characterization of the Encapsulation of Methyl Jasmonate by Natural and Modified Cyclodextrins Using Reversed-Phase High-Pressure Liquid Chromatography . Journal of Agricultural and Food Chemistry. 61. (47). p. 11347-11354.
Aguila, S., Martinez-Martinez, I, Navarro-Fernandez, J., Gutierrez-Gallego, R., Perez-Sanchez, H., De La Morena-Barrio, M. E., Vicente, V., Corral, J.(2013). Stabilization of N-glycosylation in Asn135 of antithrombin by an aromatic sequon . Journal of Thrombosis and Haemostasis. 11. p. 328-329.
Pérez-Sánchez, H.(2013). Virtual Screening for the Discovery of New Anticoagulants. Drug Design S. 1. p. 2169-0138.
Zhang, Qian, Garcia, Jose M., Wang, Junmei, Hou, Tingjun, Perez-Sanchez, Horacio(2013). A GPU based Conformational Entropy Calculation Method . Proceedings Iwbbio 2013: International Work-Conference on Bioinformatics and Biomedical Engineering. p. 735-+.
Zhang, Qian, Wang, Junmei, Guerrero, Gines D., Cecilia, Jose M., Garcia, Jose M., Li, Youyong, Perez-Sanchez, Horacio, Hou, Tingjun(2013). Accelerated Conformational Entropy Calculations Using Graphic Processing Units . Journal of Chemical Information and Modeling. 53. (8). p. 2057-2064.
Rezaei, V., Pezeshk, H., Pérez-Sánchez, H.(2013). Generalized Baum-Welch algorithm based on the similarity between sequences . PLoS ONE. 8. (12).
Sánchez-Linares, I., Pérez-Sánchez, H., Cecilia, J.M., García, J.M.(2012). High-Throughput parallel blind Virtual Screening using BINDSURF . BMC Bioinformatics. 13. (SUPPL 1).
Sanchez-Linares, Irene, Perez-Sanchez, Horacio, Cecilia, Jose M., Garcia, Jose M.(2012). High-Throughput parallel blind Virtual Screening using BINDSURF . Bmc Bioinformatics. 13.
Navarro-Fernández, J., Pérez-Sánchez, H., Martínez-Martínez, I., Meliciani, I., Guerrero, J.A., Vicente, V., Corral, J., Wenzel, W.(2012). In silico discovery of a compound with nanomolar affinity to antithrombin causing partial activation and increased heparin affinity . Journal of Medicinal Chemistry. 55. (14). p. 6403-6412.
Navarro-Fernandez, J., Perez-Sanchez, H., Martinez-Martinez, I., Meliciani, I., Guerrero, J. A., Vicente, V., Corral, J., Wenzel, W.(2012). In Silico Discovery of a Compound with Nanomolar Affinity to Antithrombin Causing Partial Activation and Increased Heparin Affinity . Journal of Medicinal Chemistry. 55. (14). p. 6403-6412.
Pérez-Sánchez, Horacio, Cecilia, José M., García, José M.(2012). Recent Advances and Future Trend on the Emerging Role of GPUs as Platforms for Virtual Screening-Based Drug Discovery. VIRTUAL SCREENING. p. 19.
Navarro-Fernandez, J., Martinez-Martinez, I, Perez-Sanchez, H., Minano, A., Bohdan, N., Eugenia de la Morena-Barrio, M., Aguila, S., Vicente, V., Corral, J.(2011). Effect of the extracellular RNA in the anticoagulant function of antithrombin . Journal of Thrombosis and Haemostasis. 9. p. 726.
Pérez-Sánchez, H., Wenzel, W.(2011). Optimization methods for virtual screening on novel computational architectures . Current Computer-Aided Drug Design. 7. (1). p. 44-52.
Perez-Sanchez, Horacio, Wenzel, Wolfgang(2011). Optimization Methods for Virtual Screening on Novel Computational Architectures . Current Computer-Aided Drug Design. 7. (1). p. 44-52.
Pérez-Sánchez, Horacio, Fischer, Bernhard, Kokh, Daria, Merlitz, Holger, Wenzel, Wolfgang(2010). High throughput in-silico screening against flexible protein receptors. Journal of Cheminformatics. 2. p. 1.
De La Torre, J.G., Díaz Baños, F.G., Pérez Sánchez, H.E.(2010). Kerr constant of multi-subunit particles and semiflexible, wormlike chains . Journal of Physics Condensed Matter. 22. (49).
Garcia de la Torre, J., Diaz Banos, F. G., Perez Sanchez, H. E.(2010). Kerr constant of multi-subunit particles and semiflexible, wormlike chains . Journal of Physics-Condensed Matter. 22. (49).
Sánchez, Horacio E., Fischer, B., Merlitz, H., Wenzel, W.(2009). High Throughput In-Silico Screening Against Flexible Protein Receptors. Biophysical Journal. 96. (3). p. 86.
Garcia de la Torre, Jose, Hernandez Cifre, Jose G., Ortega, Alvaro, Rodriguez Schmidt, Ricardo, Fernandes, Miguel X., Perez Sanchez, Horacio E., Pamies, R.(2009). SIMUFLEX: Algorithms and Tools for Simulation of the Conformation and Dynamics of Flexible Molecules and Nanoparticles in Dilute Solution . Journal of Chemical Theory and Computation. 5. (10). p. 2606-2618.
de la Torre, J. Garcıa, Dıaz, F. G., Pérez, H. E.(2006). Computational methods for dynamic electro-optic properties of macromolecules and nanoparticles in solution. Molecular and Colloidal Electro-Optics, Taylor and Francis, New York. p. 109.
Perez Sanchez, Horacio, Tatarenko, Karine, Nigen, Michael, Pavlov, Georges, Imberty, Anne, Lortat-Jacob, Hugues, de la Torre, Jose Garcia, Ebel, Christine(2006). Organization of human interferon gamma-heparin complexes from solution properties and hydrodynamics . Biochemistry. 45. (44). p. 13227-13238.
Garcia De La Torre, J., Ortega, A., Perez Sanchez, H.E., Hernandez Cifre, J.G.(2005). MULTIHYDRO and MONTEHYDRO: Conformational search and Monte Carlo calculation of solution properties of rigid or flexible bead models . Biophysical Chemistry. 116. (2). p. 121-128.
de la Torre, JG, Ortega, A, Sanchez, HEP, Cifre, JGH(2005). MULTIHYDRO and MONTEHYDRO: Conformational search and Monte Carlo calculation of solution properties of rigid or flexible bead models . Biophysical Chemistry. 116. (2). p. 121-128.
Sanchez, HEP, de la Torre, JG, Banos, FGD(2005). Transient electric birefringence of wormlike macromolecules in electric fields of arbitrary strength: A computer simulation study . Journal of Chemical Physics. 122. (12).
Pérez Sánchez, H. E., García de la Torre, J., Díaz Baños, F. G.(2003). Birefringence, deformation, and scattering of wormlike macromolecules under an external agent. Steady-state properties in an electric field. The Journal of Physical Chemistry B. 107. (47). p. 13192-13200.
García de la Torre, J., Pérez Sánchez, H.E., Ortega, A., Hernández, J.G., Fernandes, M.X., Díaz, F.G., López Martínez, M.C.(2003). Calculation of the solution properties of flexible macromolecules: Methods and applications . European Biophysics Journal. 32. (5). p. 477-486.
de la Torre, J. García, Sanchez, H. E. Perez, Ortega, A., Hernandez, J. G., Fernandes, M. X., Diaz, F. G., Martinez, M. C. Lopez(2003). Calculation of the solution properties of flexible macromolecules: methods and applications . European Biophysics Journal. 32. (5). p. 477-486.
Pérez Sánchez, H.E., García de la Torre, J., Díaz Baños, F.G.(2002). Influence of field strength and flexibility on the transient electric birefringence of segmentally flexible macromolecules . Journal of Physical Chemistry B. 106. (26). p. 6754-6761.
Latest Advances in High-Performance Computing and Big Data in Omics-based Medicine @article{RID:0204191746526-69,
title = {Latest Advances in High-Performance Computing and Big Data in Omics-based Medicine},
journal = {},
year = {},
author = {Merelli, Ivan and Pérez-Sánchez, Horacio and Gesing, Sandra and D’Agostino, Daniele}
}.
PREPRINT
Pedro Garrido-Rodríguez, Miguel Carmena-Bargueño, María Eugenia de la Morena-Barrio, Carlos Bravo-Pérez, Belén de la Morena-Barrio, Rosa Cifuentes-Riquelme, María Luisa Lozano, Horacio Pérez-Sánchez, Javier Corral (2023). Analysis of AlphaFold and molecular dynamics structure predictions of mutations in serpins .
Levent Çavaş, Cengizhan Dag, Miguel Carmena-Bargueño, Carlos Martínez-Cortés, Horacio Pérez-Sánchez (2022). Secondary Metabolites from Caulerpa Cylindracea (Sonder) Could Be Alternative Natural Antiviral Compounds for COVID-19: A Further in Silico Proof .
BOOK CHAPTER
Savíns Puertas-Martín, Juana L. Redondo, Ester M. Garzón, Horacio Pérez-Sánchez, Pilar M. Ortigosa (2022). Increasing the Accuracy of Optipharm’s Virtual Screening Predictions by Implementing Molecular Flexibility .
Savíns Puertas-Martín, Juana L. Redondo, Antonio J. Banegas-Luna, Ester M. Garzón, Horacio Pérez-Sánchez, Valerie J. Gillet, Pilar M. Ortigosa (2022). Virtual Screening Based on Electrostatic Similarity and Flexible Ligands .
Perez-Sanchez, Horacio, Ceron-Carrasco, Jose P., Cecilia, Jose M., IEEE(2017). Implementation of an efficient Blind Docking technique on HPC architectures for the discovery of allosteric inhibitors . 2017 46th International Conference on Parallel Processing Workshops (Icppw). p. 33-38.
Saadi, Hocine, Taboudjemat, Nadia Nouali, Rahmoun, Abdellatif, Imbernon, Baldomero, Perez Sanchez, Horacio, Cecilia, Jose M., IEEE(2017). Parallel desolvation energy term calculation for blind docking on GPU architectures . 2017 46th International Conference on Parallel Processing Workshops (Icppw). p. 16-22.
Contreras, Antonio V., Navarro, Sergio, Llanes, Antonio, Munoz, Andres, Perez-Sanchez, Horacio, Cecilia, Jose M.(2017). The Forex Market as an Elastic Network Model . 2017 13th International Conference on Intelligent Environments (Ie 2017). p. 155-159.
Pérez-Sánchez, Horacio, Peña-García, Jorge, den-Haan, Helena, Rodríguez-Schmidt, Ricardo, Cerón-Carrasco, José P., Raposo, Adriano N., Bouarkat, Mounira, Sabeur, Sid Ahmed, Díaz-Baños, Francisco Guillermo(2016). HYDROWEB, an Online Tool for the Calculation of Hydrodynamic Properties of Macromolecules. Bioinformatics and Biomedical Engineering. p. 82-90.
Perez-Sanchez, Horacio, Pena-Garcia, Jorge, den-Haan, Helena, Rodriguez-Schmidt, Ricardo, Ceron-Carrasco, Jose P., Raposo, Adriano N., Bouarkat, Mounira, Sabeur, Sid Ahmed, Guillermo Diaz-Banos, Francisco(2016). HYDROWEB, an Online Tool for the Calculation of Hydrodynamic Properties of Macromolecules . Bioinformatics and Biomedical Engineering (Iwbbio 2016). 9656. p. 82-90.
Llanes, Antonio, Vélez, Carlos, Sánchez, Antonia M., Pérez-Sánchez, Horacio, Cecilia, José M.(2016). Parallel Ant Colony Optimization for the HP Protein Folding Problem. Bioinformatics and Biomedical Engineering. p. 615-626.
Perez-Sianes, Javier, Perez-Sanchez, Horacio, Diaz, Fernando(2016). Virtual Screening: A Challenge for Deep Learning . 10th International Conference on Practical Applications of Computational Biology & Bioinformatics. 477. p. 13-22.
Peréz-Sánchez, Horacio, Fassihi, Afshin, Cecilia, José M., Ali, Hesham H., Cannataro, Mario(2015). Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry. Bioinformatics and Biomedical Engineering. p. 527-541.
Ghasemi, Fahimeh, Mehri, Alireza, Pena-Garcia, Jorge, den-Haan, Helena, Perez-Garrido, Alfonso, Fassihi, Afshin, Perez-Sanchez, Horacio(2015). Improving Activity Prediction of Adenosine A(2B) Receptor Antagonists by Nonlinear Models . Bioinformatics and Biomedical Engineering (Iwbbio 2015), Pt Ii. 9044. p. 635-644.
Sanchez-Linares, Irene, Perez-Sanchez, Horacio, Manuel Garcia, Jose(2012). Accelerating Grid Kernels for Virtual Screening on Graphics Processing Units . Applications, Tools and Techniques on the Road To Exascale Computing. 22. p. 413-420.
OTHER
Savíns Puertas Martín, Juana Lopez Redondo, Horacio Pérez-Sánchez, Pilar Martínez Ortigosa(2019). Optimizing Electrostatic Similarity for Virtual Screening: A New Methodology . American Chemical Society ({ACS})
Savíns Puertas Martín, Juana Lopez Redondo, Horacio Pérez-Sánchez, Pilar Martínez Ortigosa(2019). Optimizing Electrostatic Similarity for Virtual Screening: A New Methodology . American Chemical Society ({ACS})
Juluri, A., Ghasemi, F., Pérez-Sánchez, H., Murthy, R.N., Narasimha Murthy, S.(2015). Iontophoresis - Captisol-enabled(TM) lipophilic drug complex delivered transdermally by iontophoresis . Drug Development and Delivery. 15. (5).
Wenzel, Wolfgang, Perez-Sanchez, Horacio Emil, Klenin, Konstantin(2013). Method and system for determining the solvent accessible surface area and its derivatives of a molecule.
BOOK
Pérez-Sánchez, H., Peña-García, J., den-Haan, H., Rodríguez-Schmidt, R., Cerón-Carrasco, J.P., Raposo, A.N., Bouarkat, M., Sabeur, S.A., Díaz-Baños, F.G.(2016). HYDROWEB, an online tool for the calculation of hydrodynamic properties of macromolecules . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9656. p. 82-90.
Llanes, A., Vélez, C., Sánchez, A.M., Pérez-Sánchez, H., Cecilia, J.M.(2016). Parallel ant colony optimization for the HP protein folding problem . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9656. p. 615-626.
Pérez-Sianes, J., Pérez-Sánchez, H., Díaz, F.(2016). Virtual screening: A challenge for deep learning . Advances in Intelligent Systems and Computing. 477. p. 13-22.
Pèrèz-Sànchez, H., Fassihi, A., Cecilia, J.M., Ali, H.H., Cannataro, M.(2015). Applications of high performance computing in bioinformatics, computational biology and computational chemistry . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 527-541.
Sánchez-Pérez, A., Muñoz, A., Peña-García, J., den-Haan, H., Bekas, N., Katsikoudi, A., Tzakos, A.G., Péréz-Sánchez, H.(2015). DIA-DB: A web-accessible database for the prediction of diabetes drugs . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 655-663.
Imbernòn, B., Llanes, A., Peña-Garcìa, J., Abellàn, J.L., Pèrèz-Sànchez, H., Cecilia, J.M.(2015). Enhancing the parallelization of non-bonded interactions kernel for virtual screening on GPUs . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 620-626.
Ghasemi, F., Mehri, A., Peña-García, J., den-Haan, H., Pérez-Garrido, A., Fassihi, A., Péréz-Sánchez, H.(2015). Improving activity prediction of adenosine A<inf>2B</inf> receptor antagonists by nonlinear models . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 635-644.
Pratap, R., Yadav, D.K., Singh, S., Rai, R., Kumar, N., Uhm, H.-S., Singh, H., Péréz-Sánchez, H.(2015). Molecular docking and biological evaluation of functionalized benzo[h]quinolines as colon cancer agents . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 664-673.
Zhang, X., Péréz-Sánchez, H., Lightstone, F.C.(2015). Molecular dynamics simulations of ligand recognition upon binding antithrombin: A MM/GBSA approach . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 584-593.
Cano, G., García-Rodríguez, J., Orts-Escolano, S., Peña-García, J., Kumar-Yadav, D., Pérez-Garrido, A., Péréz-Sánchez, H.(2015). Support vector machine prediction of drug solubility on GPUs . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9044. p. 645-654.
Zhang, Qian, Garcia, Jose M., Wang, Junmei, Hou, Tingjun, Perez-Sanchez, Horacio, Ortuno, F, Rojas, I(2013). A GPU based Conformational Entropy Calculation Method . Proceedings IWBBIO 2013: International Work-Conference on Bioinformatics and Biomedical Engineering. p. 735-743.
Guerrero, Gines D., Cecilia, Jose M., Garcia, Jose M., Perez-Sanchez, Horacio, Ortuno, F, Rojas, I(2013). Impact of implicit solvation models on database enrichment in GPU based blind Virtual Screening . Proceedings IWBBIO 2013: International Work-Conference on Bioinformatics and Biomedical Engineering. p. 731-734.
Sánchez-Linares, I., Pérez-Sánchez, H., García, J.M.(2012). Accelerating grid kernels for virtual screening on graphics processing units . Advances in Parallel Computing. 22. p. 413-420.
Guerrero, G.D., Pérez-Sánchez, H., Wenzel, W., Cecilia, J.M., García, J.M.(2011). Effective parallelization of non-bonded interactions kernel for virtual screening on GPUs . Advances in Intelligent and Soft Computing. 93. p. 63-69.
CONFERENCE PAPER
Improving Activity Prediction of Adenosine A2B Receptor Antagonists by Nonlinear Models @inproceedings{RID:0204191746526-89,
title = {Improving Activity Prediction of Adenosine A2B Receptor Antagonists by Nonlinear Models},
booktitle = {},
year = {},
author = {Ghasemi, Fahimeh and Mehri, Alireza and Peña-García, Jorge and den-Haan, Helena and Pérez-Garrido, Alfonso and Fassihi, Afshin and Péréz-Sánchez, Horacio}
}.
Modeling Tasks Synchronization in the Fault-Tolerant Cyber-Physical Systems @inproceedings{RID:0204191746526-67,
title = {Modeling Tasks Synchronization in the Fault-Tolerant Cyber-Physical Systems},
booktitle = {},
year = {},
author = {Mezhuyev, Vitaliy and Zamli, Kamal Z. and Ameedeen, Mohamed Ariff and Pérez-Sánchez, Horacio and Samikannu, Ravi}
}.
Carretero, J., Garcia-Blas, J., Singh, D.E., Isaila, F., Lastovetsky, A., Fahringer, T., Prodan, R., Symeonidou, C., Bosilca, G., Perez-Sanchez, H., et al.(2014). Optimizations to enhance sustainability of MPI applications . ACM International Conference Proceeding Series. 09-12-September-2014. p. 145-150.
(2014). Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi} .
Perez-Sanchez, H., Guerrero, G.D., Garcia, J.M., Pena, J., Cecilia, J.M., Cano, G., Orts-Escolano, S., Garcia-Rodriguez, J.(2013). Improving drug discovery using a neural networks based parallel scoring function . Proceedings of the International Joint Conference on Neural Networks.
Guerrero, G.D., Pérez-Sánchez, H.E., Cecilia, J.M., García, J.M.(2012). Parallelization of virtual screening in drug discovery on massively parallel architectures . Proceedings - 20th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2012. p. 588-595.
Pérez-Sánchez, H., Kondov, I., García, J.M., Klenin, K., Wenzel, W.(2011). A pipeline pilot based SOAP implementation of FlexScreen for high-throughput virtual screening . CEUR Workshop Proceedings. 819.
Sánchez-Linares, I., Pérez-Sánchez, H., Guerrero, G.D., Cecilia, J.M., García, J.M.(2011). Accelerating multiple target drug screening on GPUs . Proceedings of the 9th International Conference on Computational Methods in Systems Biology, CMSB'11. p. 95-102.
Pérez-Sánchez, H., Wenzel, W.(2009). Implementation of an effective non-bonded interactions kernel for biomolecular simulations on the cell processor . INFORMATIK 2009 - Im Focus das Leben, Beitrage der 39. Jahrestagung der Gesellschaft fur Informatik e.V. (GI). p. 721-729.
Modeling Tasks Synchronization in the Fault-Tolerant Cyber-Physical Systems @inproceedings{RID:0204191746526-67,
title = {Modeling Tasks Synchronization in the Fault-Tolerant Cyber-Physical Systems},
booktitle = {},
year = {},
author = {Mezhuyev, Vitaliy and Zamli, Kamal Z. and Ameedeen, Mohamed Ariff and Pérez-Sánchez, Horacio and Samikannu, Ravi}
}.
Fang, Jianbin, Varbanescu, Ana Lucia, Imbernon, Baldomero, Cecilia, Jose M., Perez-Sanchez, Horacio Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi} .
Improving Activity Prediction of Adenosine A2B Receptor Antagonists by Nonlinear Models @inproceedings{RID:0204191746526-89,
title = {Improving Activity Prediction of Adenosine A2B Receptor Antagonists by Nonlinear Models},
booktitle = {},
year = {},
author = {Ghasemi, Fahimeh and Mehri, Alireza and Peña-García, Jorge and den-Haan, Helena and Pérez-Garrido, Alfonso and Fassihi, Afshin and Péréz-Sánchez, Horacio}
}.
REPORT
Zhang, X., Perez-Sanchez, H., Lightstone, F. C.(2014). Molecular Dynamics Simulations of the Antithrombin upon Ligand Recognition: A MM/GBSA Approach.