Profile Details

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Hire Gungor B.

Turkey

USD 150 /hr

Bioinformatician and web developer with 10+ years of experience

Profile Summary

Hi! I’m currently a bioinformatics analyst at Seven Bridges and a PhD student in Computer Engineering at Middle East Technical University (METU). I graduated from METU majoring Bioinformatics in MSc in Sep, 2016 and Biology in BS in Jan, 2014. I have been learning coding / programming since more than 12 years and in the last years I have participated in many projects about biology, bioinformatics, web design and web programming. I work as a freelance web developer and have made websites using HTML, CSS, JavaScript, AJAX, PHP, MySQL. I can also program in Python, C/C++, R, Java, and Perl.

Subject Matter Expertise

• ★ Computational Biology
• ★ Genomics
• ★ Bioinformatics
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Data Analysis
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Data Visualization
• ☆ Machine Learning
• ☆ Data Mining
• ☆ Gene & Protein Expression Analysis
• ☆ Structural Bioinformatics
• ☆ Python
• ☆ SQL
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn

Services

• Data & AI

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

Work Experience

Bioinformatics Analyst

Seven Bridges

December 2016 - Present

Research Scholar

Indiana University Purdue University at Indianapolis

October 2015 - June 2016

Software Specialist

Evias Pharmaceutical R&D

February 2015 - September 2015

Intern

Maastricht University

June 2013 - September 2013

Intern

Deutsches Krebsforschungszentrum

June 2012 - October 2012

Education

PhD (Computer Engineering)

Middle East Technical University

October 2016 - Present

MSc (Bioinformatics)

Middle East Technical University

September 2014 - September 2016

BSc (Biology)

Middle East Technical University

September 2010 - February 2014

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Budak G, Dash S, Srivastava R, Lachke SA, Janga SC(2018). Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues . Experimental eye research.

Gungor Budak, Rajneesh Srivastava, Soma Dash, Salil A. Lachke, Sarath Chandra Janga(2017). Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations . Scientific Reports. 7. (1). Springer Nature

Gungor Budak, Rajneesh Srivastava, Sarath Chandra Janga(2017). Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with {RNA}-binding proteins from condition-specific {CLIP}-seq profiles . {RNA}. 23. (6). p. 836--846. Cold Spring Harbor Laboratory

Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Nature methods, 2016 .

Hashemikhabir S, Budak G, Janga SC, Cancer informatics, 2016, vol. 15, no. Suppl 2, pp. 17-24, 2016 .

Gungor Budak, Oyku Eren Ozsoy, Yesim Aydin Son, Tolga Can, Nurcan Tuncbag(2015). Reconstruction of the temporal signaling network in Salmonella-infected human cells . Front. Microbiol. 6. Frontiers Media {SA}

CONFERENCE PAPER

Gungor Budak, Seyedsasan Hashemikhabir, Gokhan Ersoy, Gokce Oguz, Burcu Yaldiz, Yener Tuncel, Saygin Karaaslan, Yesim Aydin Son, Tolga Can(2012). M4B: A novel method for designing and ordering of the genetic devices . {IEEE}