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Hire Dr. Gorka Bidegain

Spain

Profile Summary

My primary current research as a postdoc at the Gulf Coast Research Lab - USM (USA) focuses on the development and use of mathematical models to study emerging marine diseases causing mass mortalities in marine invertebrates such as corals, oysters, abalone, sea stars, etc., with a special emphasis on the processes that underlie the generation of outbreaks. Ocean ecosystems consist of complex relationships among hosts and pathogens that challenge traditional views of human and terrestrial disease processes. A better understanding of marine disease dynamics via modeling is essential for example to evaluate the influence of anthropogenic (e.g. pollution, fishing) and climatological drivers stimulating the spread and intensification. Currently, I am working on the project 'Development of a Theoretical Basis for Modeling Disease Processes Marine Invertebrates' funded by the National Science Foundation (NSF) program in Ecology and Evolution of Infectious Diseases. The results of this project are providing an important advancement in the theoretical basis for modeling diseases and disease transmission in marine systems. In parallel I work on the development of new methodologies and algorithms related with nonparametric statistics, such as nonparametric curves estimation, testing procedures, variable selection, bootstrap resampling methods with implications in biology and fisheries. My previous research (PhD, University of Cantabria, Spain) centered in the ecological dynamics of marine invertebrates with commercial interest with emphasis on modeling different ecological aspects such as habitat suitability, larval dispersal and population connectivity, and potential expansion of introduced species.

Subject Matter Expertise

• ☆ Infectious Diseases
• ☆ Infectious Disease
• ☆ Pollution

Services

• Scientific consulting
• Product development
• Scientific writing
• Data science & analysis

Work Experience

Assistant Professor

University of the Basque Country

September 2018 - Present

Assistant Professor

University of the Basque Country

October 2017 - June 2018

Post-Doctoral Research Associate / Research Affiliate

University of Southern Mississippi Gulf Coast Research Laboratory

August 2013 - March 2018

Research Associate/PhD Student

Environmental Hydraulic Institute, University of Cantabria

December 2008 - July 2013

Marine and Environmental Consultant Scientist

Sertiic/Intecsa

March 2003 - December 2007

Education

MSc in Education

University of the Basque Country

October 2016 - September 2017

PhD in Environmental Hydraulics (Environmental Hydraulics Institute, IH Cantabria)

University of Cantabria

February 2009 - March 2013

Master of Advances Studies in Marine Sciences (Maritime, Environmental and Hydraulic Engineering )

Polytechnic University of Catalonia

September 2003 - June 2005

MSc Coastal and Marine Engineering and Management (Maritime, Environmental and Hydraulic Engineering)

Polytechnic University of Catalonia

January 2000 - September 2001

BSc in Environmental Sciences (Environmental Sciences Faculty)

University of Almeria

September 1997 - July 1999

BSc in Environmental Sciences (Environmental Sciences Faculty)

University of Almeria

September 1997 - July 1999

BSc in Oceanography (Marine Sciences Faculty)

University of Las Palmas de G.C.

September 1992 - July 1997

Certifications

• Certification details not provided.

Publications

OTHER

Gorka Bidegain, Tal Ben-Horin(2019). Discrete stochastic marine metapopulation disease model . {PeerJ}

Gorka Bidegain, Tal Ben-Horin(2018). Discrete stochastic marine metapopulation disease model . {PeerJ}

Gorka Bidegain, Tal Ben-Horin(2018). Discrete stochastic marine metapopulation disease model . {PeerJ}

Gorka Bidegain, Tal Ben-Horin(2018). Discrete stochastic marine metapopulation disease model . {PeerJ}

Gorka Bidegain, Tal Ben-Horin(2018). Discrete stochastic marine metapopulation disease model . {PeerJ}

JOURNAL ARTICLE

Gorka Bidegain, Lili Wang, Xiaolong Yang, Anguo Zhang, Ruijing Li, Guangshui Na, Xiutang Yuan(2019). Distribution patterns and ecological risk of endocrine-disrupting chemicals at Qingduizi Bay (China): A preliminary survey in a developing maricultured bay . Marine Pollution Bulletin. 146. p. 915--920. Elsevier {BV}

Bidegain, G., Mujika, J.F.L.(2019). Exploring the Relationship Between Attitudes Toward Science and PISA Scientific Performance,Exploración de la relación entre actitudes ante las ciencias y el rendimiento en el Programa Internacional para la evaluación de estudiantes (PISA) . Revista de Psicodidactica.

Wang, L., Yang, X., Zhang, A., Bidegain, G., Li, R., Na, G., Yuan, X.(2019). Distribution patterns and ecological risk of endocrine-disrupting chemicals at Qingduizi Bay (China): A preliminary survey in a developing maricultured bay . Marine Pollution Bulletin. 146. p. 915-920.

(2018). Intensive oyster aquaculture can reduce disease impacts on sympatric wild oysters . Aquaculture Environment Interactions.

Gorka Bidegain, Ika Paul-Pont(2018). Commentary: Plastic waste associated with disease on coral reefs . Frontiers in Marine Science. 5. Frontiers Media {SA}

Ben-Horin, T., Burge, C.A., Bushek, D., Groner, M.L., Proestou, D.A., Huey, L.I., Bidegain, G., Carnegie, R.B.(2018). Intensive oyster aquaculture can reduce disease impacts on sympatric wild oysters . Aquaculture Environment Interactions. 10. p. 557-567.

Bidegain, G., Paul-Pont, I.(2018). Commentary: Plastic waste associated with disease on coral reefs . Frontiers in Marine Science. 5. (JUL).

Bidegain, G., Guinda, X., Puente, A., Juanes, J.A. (2017) Distribution patterns of the gooseneck barnacle (Pollicipes pollicipes [Gmelin, 1789]) in the Cantabria region (N Spain): exploring different population assessment methods. Journal of Shellfish Research 36 (3), 1-11 .

Gorka Bidegain, Patricia L. Luque, Saijin Zhang, Jay R. Rooker, Enrique Rodríguez-Marín(2017). Dorsal fin spines as a non-invasive alternative calcified structure for microelemental studies in Atlantic bluefin tuna . Journal of Experimental Marine Biology and Ecology. 486. p. 127--133. Elsevier {BV}

Bidegain, G., Powell, E.N., Klinck, J.M., Hofmann, E.E., Ben-Horin, T., Bushek, D., Ford, S.E., Munroe, D.M., Guo, X.(2017). Modeling the transmission of Perkinsus marinus in the Eastern oyster Crassostrea virginica . Fisheries Research. 186. p. 82-93.

Bidegain, G., Guinda, X., Puente, A., Juanes, J.A.(2017). Distribution patterns of the gooseneck barnacle (Pollicipes pollicipes [Gmelin, 1789]) in the Cantabria Region (N Spain): Exploring different population assessment methods . Journal of Shellfish Research. 36. (3). p. 787-797.

Luque, P.L., Zhang, S., Rooker, J.R., Bidegain, G., Rodríguez-Marín, E.(2017). Dorsal fin spines as a non-invasive alternative calcified structure for microelemental studies in Atlantic bluefin tuna . Journal of Experimental Marine Biology and Ecology. 486. p. 127-133.

Guinda, X., Bidegain, G., Puente, A., Juanes, J.A.(2017). A first approach to stock assessment of the sea urchin Paracentrotus lividus (Lamarck, 1816) in Cantabria (Bay of Biscay) . Journal of the Marine Biological Association of the United Kingdom. 97. (3). p. 561-570.

Gorka Bidegain, Xabier Guinda, Araceli Puente, José Antonio Juanes(2016). A first approach to stock assessment of the sea urchin Paracentrotus lividus (Lamarck, 1816) in Cantabria (Bay of Biscay) . Journal of the Marine Biological Association of the United Kingdom. 97. (03). p. 561--570. Cambridge University Press ({CUP})

G. Bidegain, E.N. Powell, J.M. Klinck, T. Ben-Horin, E.E. Hofmann(2016). Microparasitic disease dynamics in benthic suspension feeders: Infective dose, non-focal hosts, and particle diffusion . Ecological Modelling. 328. p. 44--61. Elsevier {BV}

Bidegain, G., Powell, E.N., Klinck, J.M., Ben-Horin, T., Hofmann, E.E. Marine infectious disease dynamics and outbreak thresholds: pandemic infection and the potential role of filter feeders. Ecosphere 7 (4):e01286 .

Gorka Bidegain, Tal Ben-Horin, Kevin D. Lafferty, Hunter S. Lenihan(2016). Fishing diseased abalone to promote yield and conservation . Phil. Trans. R. Soc. B. 371. (1689). p. 20150211. The Royal Society

Ben-Horin, T., Lafferty, K.D., Bidegain, G., Lenihan, H.S.(2016). Fishing diseased abalone to promote yield and conservation . Philosophical Transactions of the Royal Society B: Biological Sciences. 371. (1689).

Bidegain, G., Powell, E.N., Klinck, J.M., Ben-Horin, T., Hofmann, E.E.(2016). Microparasitic disease dynamics in benthic suspension feeders: Infective dose, non-focal hosts, and particle diffusion . Ecological Modelling. 328. p. 44-61.

Bidegain, G., Powell, E.N., Klinck, J.M., Ben-Horin, T., Hofmann, E.E.(2016). Marine infectious disease dynamics and outbreak thresholds: Contact transmission, pandemic infection, and the potential role of filter feeders . Ecosphere. 7. (4).

Gorka Bidegain, Tal Ben-Horin, Lauren Huey, Diego A. Narvaez, David Bushek(2015). Parasite transmission through suspension feeding . Journal of Invertebrate Pathology. Elsevier {BV}

Gorka Bidegain, Xabier Guinda, Marta Sestelo, Javier Roca-Pardiñas, Araceli Puente, José Antonio Juanes(2015). Assessing the suitability of the minimum capture size and protection regimes in the gooseneck barnacle shellfishery . Ocean {\&} Coastal Management. 104. p. 150--158. Elsevier {BV}

(2015). Assessing the suitability of the minimum capture size and protection regimes in the gooseneck barnacle shellfishery . Ocean & Coastal Management.

Bidegain, G. 2015. A habitat suitability modeling-based approach for estimating coastal shellfish biomass. Thalassas 31 (1), 57-61.

Gorka Bidegain, Javier Francisco Bárcena, Andrés García, José Antonio Juanes(2015). Predicting coexistence and predominance patterns between the introduced Manila clam (Ruditapes philippinarum) and the European native clam (Ruditapes decussatus) . Estuarine, Coastal and Shelf Science. 152. p. 162--172. Elsevier {BV}

(2015). Predicting coexistence and predominance patterns between the introduced Manila clam (Ruditapes philippinarum) and the European native clam (Ruditapes decussatus) . Estuarine, Coastal and Shelf Science.

Bidegain, G.(2015). A habitat suitability modelling - Based approach for estimating coastal shellfish biomass . Thalassas. 31. (1). p. 57-61.

Ben-Horin, T., Bidegain, G., Huey, L., Narvaez, D.A., Bushek, D.(2015). Parasite transmission through suspension feeding . Journal of Invertebrate Pathology. 131. p. 155-176.

Bidegain, G., Guinda, X., Sestelo, M., Roca-Pardiñas, J., Puente, A., Juanes, J.A.(2015). Assessing the suitability of the minimum capture size and protection regimes in the gooseneck barnacle shellfishery . Ocean and Coastal Management. 104. p. 150-158.

Bidegain, G., Bárcena, J.F., García, A., Juanes, J.A.(2015). Predicting coexistence and predominance patterns between the introduced Manila clam (Ruditapes philippinarum) and the European native clam (Ruditapes decussatus) . Estuarine, Coastal and Shelf Science. 152. p. 162-172.

Gorka Bidegain, Javier Francisco Bárcena, Andrés García, José Antonio Juanes(2013). {LARVAHS}: Predicting clam larval dispersal and recruitment using habitat suitability-based particle tracking model . Ecological Modelling. 268. p. 78--92. Elsevier {BV}

Gorka Bidegain, José Antonio Juanes(2013). Does expansion of the introduced Manila clam Ruditapes philippinarum cause competitive displacement of the European native clam Ruditapes decussatus? . Journal of Experimental Marine Biology and Ecology. 445. p. 44--52. Elsevier {BV}

Bidegain, G. 2013. Marine larvae lost in the ocean: Searching for the big wave. Journal of Marine Animals and Their Ecology 6 (1), 4-5 .

Gorka Bidegain, Marta Sestelo, Javier Roca-Pardiñas, José Antonio Juanes(2013). Estimating a new suitable catch size for two clam species: Implications for shellfishery management . Ocean {\&} Coastal Management. 71. p. 52--63. Elsevier {BV}

Bidegain, G., Bárcena, J.F., García, A., Juanes, J.A.(2013). LARVAHS: Predicting clam larval dispersal and recruitment using habitat suitability-based particle tracking model . Ecological Modelling. 268. p. 78-92.

Bidegain, G., Juanes, J.A.(2013). Does expansion of the introduced Manila clam Ruditapes philippinarum cause competitive displacement of the European native clam Ruditapes decussatus? . Journal of Experimental Marine Biology and Ecology. 445. p. 44-52.

Bidegain, G., Sestelo, M., Roca-Pardiñas, J., Juanes, J.A.(2013). Estimating a new suitable catch size for two clam species: Implications for shellfishery management . Ocean and Coastal Management. 71. p. 52-63.

Juanes, J.A., Bidegain, G., Echavarri-Erasun, B., Puente, A., García, A., García, A., Bárcena, J.F., Álvarez, C., García-Castillo, G.(2012). Differential distribution pattern of native Ruditapes decussatus and introduced Ruditapes phillippinarum clam populations in the Bay of Santander (Gulf of Biscay): Considerations for fisheries management . Ocean and Coastal Management. 69. p. 316-326.

Gorka Bidegain, José Antonio Juanes, Beatriz Echavarri-Erasun, Araceli Puente, Ana García, Andrés García, Javier F. Bárcena, César Álvarez, Gerardo García-Castillo(2012). Differential distribution pattern of native Ruditapes decussatus and introduced Ruditapes phillippinarum clam populations in the Bay of Santander (Gulf of Biscay): Considerations for fisheries management . Ocean {\&} Coastal Management. 69. p. 316--326. Elsevier {BV}

CONFERENCE PAPER

Ben-Horin, T., Bidegain, G., Burge, C., Bushek, D., Carnegie, R., Groner, M., Hofmann, E.E., Munroe, D., Powell, E.N., Proestou, D., and Shroer, W. (2018) Does restoring oyster reefs restore oyster health? Coastal & Estuarine Research Federation Biennial Conference. Providence, Rhode Island, USA.

Bidegian, G., Klinck, J.M., Powell, E.N., Hoffman, E.E., Levin, J.C. (2017) The influence of hydrodynamics (advection and vertical mixing) on disease transmission time in benthic metapopulations distributed among reefs.109th National Shellfisheries Association Meeting, Knoxville, TN, USA.

Hoffman, E.E., Powell, E.N., Klinck, J.M., Bidegian, G. (2017) Modeling marine bivalve populations: approaches and challenges. 109th National Shellfisheries Association Meeting, Knoxville, TN, USA, Plenary Session.

Hofmann, E.E., Powell, E.N., Klinck, J.M., Bidegain, G. 2016. Modeling within-host pathogen interactions in marine bivalves. 14th Ecology and Evolution of Infectious Disease Meeting. 3-5 June. Cornell University, Ithaca, New York, USA .

Klinck, J.M., Bidegain, G., Powell, E.N., Ben-Horin, T., Hofmann, E.E. 2016. Disease transmission by free- drifting infectious particles in sessile filter feeders: a theoretical and model analysis. Oceans Sciences Meeting 2016, New Orleans, LA, USA .

23. Powell, E.N, Bidegain, G ., Munroe, D., Klinck, J.M., Hofmann, E.E. 2015. Models, reference points, and restoration: the challenge of oyster (and other marine) diseases. 23rd Biennial Coastal & Estuarine Research Federation (CERF) Conference, Nov 8-13, 2015. Portland, USA.

Guinda, X., Bidegain, G., Puente, A., Juanes, J.A. 2015. Application of science to policy in the harvesting of Paracentrotus lividus (Lamarck, 1816).50th European Marine Biology Symposium. Helgoland, Germany, 21-25 September .

(2015). Marine disease transmission models and an introduction to parameter estimation . RCN Marine Disease Modeling and Transmission Workshop. Old Dominion University. Norfolk, VA, USA. Talk.

(2015). The effect of current flow and oyster reef characteristics on disease dilution . 1st Research Exchange Meeting, University of Southernn Mississippi. Long Beach Campus, MS, USA.

(2015). Dilution of the oyster parasite Perkinsus marinus by commensal tunicates . Journal of Shellfish Research 34(2):585-694.

(2015). Overfiltration of marine diseases I: experimental evidence and notes from the field . Journal of Shellfish Research 34(2):585-694.

Bidegain, Gorka and Powell, Eric N and Klinck, John M and Ben-Horin, Tal and Hofmann, Eileen E(2015). Modeling overfiltration of marine pathogens . Journal of Mississippi Academy of Science. 60. (1).

Bidegain, Gorka and Powell, Eric N and Klinck, John M and Ben-Horin, Tal and Hofmann, Eileen E(2015). Epizootiological modeling of marine infectious diseases . Journal of Mississippi Academy of Science. 60. (1).

(2014). The collapse of oyster fisheries and emergence of Dermo disease in Atlantic estuaries . Ecology and Evolution of Infectious Diseases 12th Annual Conference, Fort Collins, CO.

Bidegain, G., Powell, E.N., Klinck, J.M., Hofmann, E.E. 2014. Modeling shellfish infectious diseases: Application to Dermo in eastern oyster, Crassostrea virginica. 106th NSA Meeting. Jacksonville, FL, USA. Journal of Shellfish Research 33, 592 .

(2014). A marine infectious disease model . Journal of Mississippi Academy of Science.

(2014). Development of a theoretical basis for modeling disease processes in marine invertebrates. Ocean Science Meeting, Honolulu, Hawaii, USA.

(2014). A marine infectious disease model . Journal of the Mississippi Academy of Sciences.

(2014). Beyond within-host proliferation and environmental control in marine invertebrate diseases . Bays and Bayous Symposium, Mobile, AL, USA.

(2012). Modelling habitat suitability for two clam species (Ruditapes sp.) using Ecological Niche Factor Analysis (ENFA). Estuarine and Coastal Sciences Association Symposium, ECSA 51, Venice.

(2012). Is the competitive interaction between the non indigenous bivalve Ruditapes philippinarum and the native bivalve Ruditapes decussatus a determining factor to explain the reduction of the native population?. XIII International Symposium on Oceanography of the Bay of Biscay. Santander. Spain.

(2012). Recruitment and growth of Pollicipes pollicipes on the coast of Cantabria (Gulf of Biscay, northern Spain). XIII International Symposium on Oceanography of the Bay of Biscay, Santander, Spain.

(2012). Modelling dispersal and potential recruitment patterns of Ruditapes phillippinarum and Ruditapes decussatus bivalves based on particle tracking, habitat suitability and larval dynamics . Estuarine and Coastal Sciences Association Symposium, ECSA 51, Venice.

(2011). A non parametric model for estimating an ideal size of capture for Ruditapes decussatus (native) and Ruditapes phillippinarum (introduced) bivalves . Symposium Estuaries and lagoons ecosystem trajectories. Bourdeaux.

(2011). An alternative model for estimating the lengthweight relationship of Ruditapes decussatus (native) and Ruditapes philippinarum (introduced) bivalves on the northern coast of Spain (Cantabrian Sea ) . 6th Congress of European Malacological Societies. Vitoria, Spain.

ONLINE RESOURCE

Ben-Horin, T., Bidegain, G., Lafferty, K., Lenihan, H. Fishing disease abalone to promote yield and conservation. 2016. Aquaculture 2016, World Aquaculture Society Meeting. Las Vegas, NV, USA .

Bidegain, G., Klinck, J.M., Levin, J., Powell, E.N., Haidvogel, D., Ben-Horin, T., Hofmann, E.E. 2016. A coupled benthic-circulation model for Dermo disease in the eastern oyster Crassostrea virginica. Aquaculture 2016, World Aquaculture Society Meeting. Las Vegas, NV, USA .

CONFERENCE ABSTRACT

Bidegain, G., Ben-Horin, T., Powell, E.N., Klinck, J.M., Bushek, D., Hofmanand Ben, Tal and Horin, Eric N and Hofmann, E.E. (2015) Journal of Shellfish Research 34(2):585-694 .

BOOK CHAPTER

(2014). Nonparametric regression applied to sea urchin growth . Sea Urchins: Habitat, Embryonic Development and Importance in the Environment.

DISSERTATION THESIS

(2013). Ecological dynamics of a native and a nonindigenous clam species: Implications for conservation and shellfishery management . PhD dissertation.