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Hire Dr. Giorgio G.

Italy

USD 20 /hr

Freelance Bioinformatician, Biostatistician, Data Scientist | Expert in BigData, Microbiota Research, NGS

Profile Summary

I was born as a molecular biologist with my gaze fixed on genetic engineering and few years later I have begun the way towards biostatistics and computer science discipline. My experiences are increasingly interested in the analysis of the complex systems (i.e. microbiota) and in the statistic methods to understand the dynamics of them. Expert in: R, Qiiime1 and 2, Biostatistics/Machine learning Beginner in: Java, python, SPSS, KNIME

Subject Matter Expertise

• ★ Biostatistics
• ★ Data Mining
• ☆ Microbiology
• ☆ Genetics
• ☆ Next Generation Sequencing (NGS)
• ☆ Data Analysis
• ☆ Data Processing
• ☆ Machine Learning
• ☆ Bioinformatics
• ☆ Applied Ecology
• ☆ Java

Services

• Writing
• Research
• Data & AI

Writing Technical Writing

Research Fact Checking, Gray Literature Search, Systematic Literature Review, Secondary Data Collection

Data & AI Statistical Analysis, Data Visualization

Work Experience

PostDoc fellowship: Big Data analyses for biomarker detection in mammalian cancer

IRCCS Istituto Nazionale dei Tumori (Milano)

October 2018 - Present

PostDoc fellowship: Maple project by JPI; Bioinformatics, Biostatistics and NGS data analyses

University of Milano

October 2017 - October 2018

Internship Trascriptomics analysis

INRA Functional genomics group (Paris)

January 2014 - August 2014

Internship in Genetic therapy

Généthon, Evry (Paris).

February 2013 - September 2013

Internship in Microarray analyses

IRCCS Burlo Garofolo hospital.

March 2009 - February 2010

Education

Master Java development

Istituto formativo europeo

February 2018 - Present

Ph.D. in Food Systems: Characterization of the intestinal microbial ecosystem through bioinformatic and statistical analyses of the microbiomics data

University of Milano

October 2014 - October 2017

Master 2 degree: Genome and Organisms Sciences, Systems & Synthetic biology. ECTF:B

University of Evry-Val d'Essonne, Paris (FR).

September 2013 - August 2014

Five years degree in Biology/Functional genomics. Vote:100/100 cum laude

University of Trieste (Italy)

September 2007 - December 2013

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Martini, D., Bernardi, S., Del Bo’, C., Liberona, N.H., Zamora-Ros, R., Tucci, M., Cherubini, A., Porrini, M., Gargari, G., González-Domínguez, R., et al.(2020). Estimated intakes of nutrients and polyphenols in participants completing the maple randomised controlled trial and its relevance for the future development of dietary guidelines for the older subjects . Nutrients. 12. (8). p. 1-17.

Koirala, R., Koirala, R., Gargari, G., Arioli, S., Taverniti, V., Fiore, W., Grossi, E., Anelli, G.M., Cetin, I., Guglielmetti, S.(2020). Effect of oral consumption of capsules containing Lactobacillus paracasei LPC-S01 on the vaginal microbiota of healthy adult women: A randomized, placebo-controlled, double-blind crossover study . FEMS Microbiology Ecology. 96. (6).

(2020). Impact of a multistrain probiotic formulation with high bifidobacterial content on the fecal bacterial community and short-chain fatty acid levels of healthy adults . Microorganisms. 8. (4).

Guglielmetti, S., Bernardi, S., Del Bo', C., Cherubini, A., Porrini, M., Gargari, G., Hidalgo-Liberona, N., Gonzalez-Dominguez, R., Peron, G., Zamora-Ros, R., et al.(2020). Effect of a polyphenol-rich dietary pattern on intestinal permeability and gut and blood microbiomics in older subjects: Study protocol of the MaPLE randomised controlled trial . BMC Geriatrics. 20. (1).

Dalla Via, A., Gargari, G., Taverniti, V., Rondini, G., Velardi, I., Gambaro, V., Visconti, G.L., De Vitis, V., Gardana, C., Ragg, E., et al.(2020). Urinary TMAO levels are associated with the taxonomic composition of the gut microbiota and with the choline TMA-lyase gene (cutC) harbored by enterobacteriaceae . Nutrients. 12. (1).

Bernardi S, Del Bo' C, Marino M, Gargari G, Cherubini A, Andrés-Lacueva C, Hidalgo-Liberona N, Peron G, González-Dominguez R, Kroon P, et al.(2019). Polyphenols and Intestinal Permeability: Rationale and Future Perspectives . Journal of agricultural and food chemistry.

(2019). Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7-/- mice . Scientific reports.

(2019). Exploring Associations between Interindividual Differences in Taste Perception, Oral Microbiota Composition, and Reported Food Intake . Nutrients.

Taverniti V, Marengo M, Fuglsang E, Skovsted HM, Arioli S, Mantegazza G, Gargari G, Iametti S, Bonomi F, Guglielmetti S, et al.(2019). Surface Layer of Lactobacillus helveticus MIMLh5 Promotes Endocytosis by Dendritic Cells . Applied and environmental microbiology.

Cattaneo C, Gargari G, Koirala R, Laureati M, Riso P, Guglielmetti S, Pagliarini E(2019). New insights into the relationship between taste perception and oral microbiota composition . Scientific reports.

Pepè Sciarria T, Arioli S, Gargari G, Mora D, Adani F(2019). Monitoring microbial communities' dynamics during the start-up of microbial fuel cells by high-throughput screening techniques . Biotechnology Reports.

Taverniti V, Koirala R, Dalla Via A, Gargari G, Leonardis E, Arioli S, Guglielmetti S(2019). Effect of Cell Concentration on the Persistence in the Human Intestine of Four Probiotic Strains Administered through a Multispecies Formulation . Nutrients.

Cattaneo, C., Riso, P., Laureati, M., Gargari, G., Pagliarini, E.(2019). Exploring associations between interindividual differences in taste perception, oral microbiota composition, and reported food intake . Nutrients. 11. (5).

Pepè Sciarria, T., Arioli, S., Gargari, G., Mora, D., Adani, F.(2019). Monitoring microbial communities’ dynamics during the start-up of microbial fuel cells by high-throughput screening techniques . Biotechnology Reports. 21.

Cattaneo, C., Gargari, G., Koirala, R., Laureati, M., Riso, P., Guglielmetti, S., Pagliarini, E.(2019). New insights into the relationship between taste perception and oral microbiota composition . Scientific Reports. 9. (1).

Taverniti, V., Marengo, M., Fuglsang, E., Skovsted, H.M., Arioli, S., Mantegazza, G., Gargari, G., Iametti, S., Bonomi, F., Guglielmetti, S., et al.(2019). Surface layer of Lactobacillus helveticus MIMLh5 promotes endocytosis by dendritic cells . Applied and Environmental Microbiology. 85. (9).

(2019). Effect of cell concentration on the persistence in the human intestine of four probiotic strains administered through a multispecies formulation . Nutrients. 11. (2).

Bernardi, S., Del Bo', C., Bernardi, S., Bernardi, S., Del Bo', C., Marino, M., Gargari, G., Cherubini, A., Andrés-Lacueva, C., Hidalgo-Liberona, N., et al.(2019). Polyphenols and Intestinal Permeability: Rationale and Future Perspectives . Journal of Agricultural and Food Chemistry.

(2019). Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7 ^−/− mice . Scientific Reports. 9. (1).

(2018). Fecal Clostridiales distribution and short-chain fatty acids reflect bowel habits in irritable bowel syndrome . Environmental microbiology.

Colombo S, Arioli S, Gargari G, Neri E, Della Scala G, Mora D(2018). Characterization of airborne viromes in cheese production plants . Journal of applied microbiology.

(2018). Evidence of dysbiosis in the intestinal microbial ecosystem of children and adolescents with primary hyperlipidemia and the potential role of regular hazelnut intake . FEMS microbiology ecology.

(2018). Effect of Lactobacillus paracasei CNCM I-1572 on symptoms, gut microbiota, short chain fatty acids, and immune activation in patients with irritable bowel syndrome: A pilot randomized clinical trial . United European Gastroenterology Journal. 6. (4). p. 604-613.

(2018). Fecal Clostridiales distribution and short-chain fatty acids reflect bowel habits in irritable bowel syndrome . Environmental Microbiology. 20. (9). p. 3201-3213.

(2018). Characterization of airborne viromes in cheese production plants . Journal of Applied Microbiology. 125. (5). p. 1444-1454.

(2018). Evidence of dysbiosis in the intestinal microbial ecosystem of children and adolescents with primary hyperlipidemia and the potential role of regular hazelnut intake . FEMS microbiology ecology. 94. (5).

(2017). Effect of Lactobacillus paracasei CNCM I-1572 on symptoms, gut microbiota, short chain fatty acids, and immune activation in patients with irritable bowel syndrome: A pilot randomized clinical trial . United European Gastroenterology Journal.

(2017). T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP . Cell reports.

(2017). Serum lipid profile and fatty acid composition of erythrocyte phospholipids in children and adolescents with primary hyperlipidemia . International Journal of Food Sciences and Nutrition. 68. (3). p. 339-348.

Colombo, S., Arioli, S., Neri, E., Della Scala, G., Gargari, G., Mora, D.(2017). Viromes as genetic reservoir for the microbial communities in aquatic environments: A focus on antimicrobial-resistance genes . Frontiers in Microbiology. 8. (JUN).

(2017). T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP . Cell Reports. 18. (11). p. 2566-2575.

Gargari G, Taverniti V, Balzaretti S, Ferrario C, Gardana C, Simonetti P, Guglielmetti S(2016). Consumption of a Bifidobacterium bifidum Strain for 4 Weeks Modulates Dominant Intestinal Bacterial Taxa and Fecal Butyrate in Healthy Adults . Applied and Environmental Microbiology.

Montagna M, Mereghetti V, Gargari G, Guglielmetti S, Faoro F, Lozzia G, Locatelli D, Limonta L(2016). Evidence of a bacterial core in the stored products pest Plodia interpunctella: the influence of different diets . Environmental microbiology.

(2016). Consumption of a bifidobacterium bifidum strain for 4 weeks modulates dominant intestinal bacterial taxa and fecal butyrate in healthy adults . Applied and Environmental Microbiology. 82. (19). p. 5850-5859.

Montagna, M., Mereghetti, V., Gargari, G., Guglielmetti, S., Faoro, F., Lozzia, G., Locatelli, D., Limonta, L.(2016). Evidence of a bacterial core in the stored products pest Plodia interpunctella: the influence of different diets . Environmental Microbiology. 18. (12). p. 4961-4973.