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Hire David L.

Switzerland

USD 45 /hr

Bioinformatician, scRNAseq, Scientific writter, Data analyst

Profile Summary

David Lopez-Rodriguez, PhD - Researcher based in Switzerland With a Ph.D. in biomedicine/bioinformatics and over 5 years of experience in the field, I possess a distinct advantage in being able to proficiently conduct bioinformatic analysis while comprehending the underlying biological problem. I have extensive experience in publishing scientific peer-reviewed papers, including renowned journals such as Nature Reviews Endocrinology (Impact Factor: 47.5) and Environmental Health Perspectives (IF: 10.7), among others. My expertise includes: - Transcriptomic analysis: single-cell RNA sequencing (scRNAseq), bulk RNAseq, ChIPseq,... - scRNAseq workflows: ranging from clustering andquality control to advanced techniques (pseudotime, transcription factor analysis, cell-cell communication, RNA velocity and so much more) - Chemoinformatics: visualization, analysis of chemicals, QSAR (Quantitative Structure-Activity Relationship) & more. - Biomedical and clinical statistical data analysis - Statistical analysis for toxicity studies - Data analysis using R, Python, and bash. - Data visualization / figure preparation using photoshop / InDesign What I offer: - Written reports: I provide easily understandable reports that include a concise summary of the methods used - Data visualization: I create high-quality, publication-ready figures to effectively represent your data - Code assistance: I offer assistance with your code needs and help troubleshoot problems on a case-by-case basis - Scientific/Tecnical writing: I can review and provide feedback on grants, papers, reports, and other scientific and technical documents - Scientific/Technical illustration: I offer services for creating visually appealing and scientifically accurate illustrations - ...And more. I am flexible and open to discussing additional services that may be required to meet your specific needs Visit my website for a detailed description of my background and publications: dalodriguez.github.io/

Subject Matter Expertise

• ★ Next Generation Sequencing (NGS)
• ★ Data Visualization
• ★ Bioinformatics
• ☆ Chemoinformatics
• ☆ Computational Biology
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Epigenetics
• ☆ PCR
• ☆ Gene Expression Analysis
• ☆ RNA Sequencing
• ☆ ChIP-Seq
• ☆ Cell Biology
• ☆ Cell Signaling Pathways
• ☆ Neuroscience
• ☆ Neurophysiology
• ☆ Computational Neuroscience
• ☆ Neuroanatomy
• ☆ Developmental Neuroscience
• ☆ Molecular Neuroscience
• ☆ Data Analysis
• ☆ Algorithm Design
• ☆ Data Processing
• ☆ Cluster Analysis
• ☆ Statistics
• ☆ Statistical Review
• ☆ Circadian Rhythm Research
• ☆ Python
• ☆ R

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research User Research, Technology Scouting, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Image Processing, Image Analysis, Algorithm Design-ML, Data Visualization

Work Experience

BIoinformatician / Biologist

University of Lausanne

October 2021 - Present

Research Fellow

University of Lausanne

October 2021 - Present

FREIA Horizon 2020 Research fellow

University of Liège

September 2020 - September 2021

BIoinformatician / Biologist

University of Liege

January 2020 - January 2021

PhD Student

University of Liège

January 2015 - September 2020

Biomedicine

University of Liege

January 2016 - January 2020

Education

MAS in Toxicology. Risk Assessment, Clinic Toxicology and Ecotoxicology Modules (11 ECTS)

University of Geneva

January 2023 - Present

PhD in Biomedicine

University of Liege

January 2016 - January 2020

MSc Experimental Neuroscience

University of Liege

January 2014 - January 2016

Certifications

• FELASA

  University of Liege

  January 2015 - Present

Publications

JOURNAL ARTICLE

Delphine Franssen, Hanna K. L. Johansson, David Lopez-Rodriguez, Arnaud Lavergne, Quentin Terwagne, Julie Boberg, Sofie Christiansen, Terje Svingen, Anne-Simone Parent(2023). Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats . Frontiers in Endocrinology. 14. Frontiers Media {SA}

Lopez-Rodriguez D, Rohrbach A, Lanzillo M, Gervais M, Croizier S, Langlet F(2023). Ontogeny of ependymoglial cells lining the third ventricle in mice . Frontiers in endocrinology.

Lopez-Rodriguez, D., Rohrbach, A., Lanzillo, M., Gervais, M., Croizier, S., Langlet, F.(2023). Ontogeny of ependymoglial cells lining the third ventricle in mice . Frontiers in Endocrinology. 13.

Franssen, D., Svingen, T., Lopez Rodriguez, D., Van Duursen, M., Boberg, J., Parent, A.-S.(2022). A Putative Adverse Outcome Pathway Network for Disrupted Female Pubertal Onset to Improve Testing and Regulation of Endocrine Disrupting Chemicals . Neuroendocrinology. 112. (2). p. 101-114.

Lopez-Rodriguez D, Franssen D, Heger S, Parent AS(2021). Endocrine-disrupting chemicals and their effects on puberty . Best practice & research. Clinical endocrinology & metabolism.

López-Rodríguez D, Aylwin CF, Delli V, Sevrin E, Campanile M, Martin M, Franssen D, Gérard A, Blacher S, Tirelli E, et al.(2021). Multi- and Transgenerational Outcomes of an Exposure to a Mixture of Endocrine-Disrupting Chemicals (EDCs) on Puberty and Maternal Behavior in the Female Rat . Environmental health perspectives.

Franssen D, Svingen T, Lopez Rodriguez D, Van Duursen M, Boberg J, Parent AS(2021). A Putative Adverse Outcome Pathway Network for Disrupted Female Pubertal Onset to Improve Testing and Regulation of Endocrine Disrupting Chemicals . Neuroendocrinology.

López-Rodríguez, D., Aylwin, C.F., Delli, V., Sevrin, E., Campanile, M., Martin, M., Franssen, D., Gérard, A., Blacher, S., Tirelli, E., et al.(2021). Multi- and transgenerational outcomes of an exposure to a mixture of endocrine-disrupting chemicals (EDCs) on puberty and maternal behavior in the female rat . Environmental Health Perspectives. 129. (8).

Lopez-Rodriguez, D., Franssen, D., Heger, S., Parent, A.-S.(2021). Endocrine-disrupting chemicals and their effects on puberty . Best Practice and Research: Clinical Endocrinology and Metabolism. 35. (5).

Lopez-Rodriguez, D., Franssen, D., Bakker, J., Lomniczi, A., Parent, A.-S.(2021). Cellular and molecular features of EDC exposure: consequences for the GnRH network . Nature Reviews Endocrinology. 17. (2). p. 83-96.

Lopez-Rodriguez D, Franssen D, Bakker J, Lomniczi A, Parent AS(2020). Cellular and molecular features of EDC exposure: consequences for the GnRH network . Nature reviews. Endocrinology.

López-Rodríguez D, Franssen D, Sevrin E, Gérard A, Balsat C, Blacher S, Noël A, Parent AS(2019). Persistent vs Transient Alteration of Folliculogenesis and Estrous Cycle After Neonatal vs Adult Exposure to Bisphenol A . Endocrinology.

Fudvoye J, Lopez-Rodriguez D, Franssen D, Parent AS(2019). Endocrine disrupters and possible contribution to pubertal changes . Best practice & research. Clinical endocrinology & metabolism.

Lopez Rodriguez D, Delli V, Aylwin C, Gerard A, Blacher S, Tirelli E, Noel A, Bourguignon J, Lomniczi A, Parent A(2019). OR23-1 Transgenerational Effects of Endocrine Disrupting Chemicals on Pubertal Timing through Epigenetic Reprogramming of the Hypothalamus . Journal of the Endocrine Society.

Fudvoye, J., Lopez-Rodriguez, D., Franssen, D., Parent, A.-S.(2019). Endocrine disrupters and possible contribution to pubertal changes . Best Practice and Research: Clinical Endocrinology and Metabolism. 33. (3).

López-Rodríguez, D., Franssen, D., Sevrin, E., Gérard, A., Balsat, C., Blacher, S., Noël, A., Parent, A.-S.(2019). Persistent vs Transient Alteration of Folliculogenesis and Estrous Cycle After Neonatal vs Adult Exposure to Bisphenol A . Endocrinology. 160. (11). p. 2558-2572.

Sánchez CR, Ramos C, Díaz F, López D (2014). Attention-deficit/hyperactivity disorder: prevalence of risk in the scholastic scope of the Canary Islands. Actas espanolas de psiquiatria.

PREPRINT

López-Rodríguez D, Aylwin CF, Delli V, Sevrin E, Campanile M, Martin M, Franssen D, Gérard A, Blacher S, Tirelli E, et al.(2020). Multi- and transgenerational disruption of maternal behavior and female puberty by Endocrine Disrupting Chemical (EDC) mixture exposure .

OTHER

López-Rodríguez, D., Aylwin, C.F., Delli, V., Sevrin, E., Campanile, M., Martin, M., Franssen, D., Gérard, A., Blacher, S., Tirelli, E., et al.(2020). Multi- And transgenerational disruption of maternal behavior and female puberty by endocrine disrupting chemical (EDC) mixture exposure . bioRxiv.