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Profile Details
Subject Matter Expertise
Services
Consulting
Scientific and Technical Consulting
Data & AI
Algorithm Design-Non ML,
Data Visualization,
Big Data Analytics
Work Experience
Senior Data Scientist
AstraZeneca FoU Göteborg
October 2022 - Present
Postdoctoral Research fellow
Umeå University
July 2020 - October 2022
Education
PhD in Bioinformatics & Computational Science
Umea University - Sweden
June 2015 - August 2020
Certifications
- Certification details not provided.
Publications
JOURNAL ARTICLE
(2020). Leaf shape in
Populus tremula
is a complex, omnigenic trait . Ecology and Evolution.
Mannapperuma, Chanaka and Liu, H. and Bel, M. and Delhomme, Nicolas and Serrano, A. and Schiffthaler, Bastian and Hvidsten, Torgeir R. and Vandepoele, K. and Ayllón-Benítez, A. and Street, Nathaniel(2020). PlantGenIE-PLAZA: integrating orthology into the PlantGenIE.org resource using the PLAZA pipeline.
Christie, N. and Mannapperuma, Chanaka and Ployet, R. and Merwe, K. van der and M{\"a}hler, Niklas and Delhomme, Nicolas and Naidoo, S. and Mizrachi, E. and Street, Nathaniel and Myburg, A. A(2020). The Eucalyptus Genome Integrative Explorer: an online resource for systems genetics in forest tree species. The Plant Journal.
Wegrzyn, Jill L. and Staton, Margaret A. and Street, Nathaniel R. and Main, Dorrie and Grau, Emily and Herndon, Nic and Buehler, Sean and Falk, Taylor and Zaman, Sumaira and Ramnath, Risharde and Richter, Peter and Sun, Lang and Condon, Bradford and Almsaeed, Abdullah and Chen, Ming and Mannapperuma, Chanaka and Jung, Sook and Ficklin, Stephen(2019). Cyberinfrastructure to Improve Forest Health and Productivity : The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment . Frontiers in Plant Science. 10.
Kumar, Vikash and Hainaut, Matthieu and Delhomme, Nicolas and Mannapperuma, Chanaka and Immerzeel, Peter and Street, Nathaniel and Henrissat, Bernard and Mellerowicz, Ewa J.(2019). Poplar carbohydrate-active enzymes : whole-genome annotation and functional analyses based on RNA expression data . The Plant Journal. 99. (4). p. 589--609.
Jokipii-Lukkari S, Delhomme N, Schiffthaler B, Mannapperuma C, Prestele J, Nilsson O, Street NR, Tuominen H(2018). Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce . Plant physiology.
Lin, Yao-Cheng and Wang, Jing and Delhomme, Nicolas and Schiffthaler, Bastian and Sundstr{\"o}m, G{\"o}rel and Zuccolo, Andrea and Nystedt, Bj{\"o}rn and Hvidsten, Torgeir R. and de la Torre, Amanda and Cossu, Rosa M. and Hoeppner, Marc P. and Lantz, Henrik and Scofield, Douglas G. and Zamani, Neda and Johansson, Anna and Mannapperuma, Chanaka and Robinson, Kathryn M. and M{\"a}hler, Niklas and Leitch, Ilia J. and Pellicer, Jaume and Park, Eung-Jun and Van Montagu, Marc and Van de Peer, Yves and Grabherr, Manfred and Jansson, Stefan and Ingvarsson, P{\"a}r K. and Street, Nathaniel R.(2018). Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen . Proceedings of the National Academy of Sciences of the United States of America. 115. (46). p. E10970--E10978. NATL ACAD SCIENCES
Jokipii-Lukkari, Soile and Delhomme, Nicolas and Schiffthaler, Bastian and Mannapperuma, Chanaka and Prestele, Jakob and Nilsson, Ove and Street, Nathaniel and Tuominen, Hannele(2018). Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce . Plant Physiology. 176. (4). p. 2851--2870. American Society of Plant Biologists
Sundell D, Street NR, Kumar M, Mellerowicz EJ, Kucukoglu M, Johnsson C, Kumar V, Mannapperuma C, Delhomme N, Nilsson O, et al.(2017). AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula . The Plant cell.
Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, et al.(2017). Spatially resolved transcriptome profiling in model plant species . Nature plants.
Sundell, David and Street, Nathaniel R. and Kumar, Manoj and Mellerowicz, Ewa J. and Kucukoglu, Melis and Johnsson, Christoffer and Kumar, Vikash and Mannapperuma, Chanaka and Delhomme, Nicolas and Nilsson, Ove and Tuominen, Hannele and Pesquet, Edouard and Fischer, Urs and Niittyla, Totte and Sundberg, Bjorn and Hvidsten, Torgeir R.(2017). AspWood : High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula . The Plant Cell. 29. (7). p. 1585--1604.
Giacomello, Stefania and Salmen, Fredrik and Terebieniec, Barbara K. and Vickovic, Sanja and Navarro, Jos{\’e;} Fernandez and Alexeyenko, Andrey and Reimegard, Johan and McKee, Lauren S. and Mannapperuma, Chanaka and Bulone, Vincent and St{\aa}hl, Patrik L. and Sundstr{\"o}m, Jens F. and Street, Nathaniel and Lundeberg, Joakim(2017). Spatially resolved transcriptome profiling in model plant species . Nature Plants. 3. (6).
Sundell D, Street NR, Kumar M, Mellerowicz EJ, Kucukoglu M, Johnsson C, Kumar V, Mannapperuma C, Delhomme N, Nilsson O, et al.(2016). AspWood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in Populus tremula .
Sundell D, Mannapperuma C, Netotea S, Delhomme N, Lin YC, Sjödin A, Van de Peer Y, Jansson S, Hvidsten TR, Street NR(2015). The Plant Genome Integrative Explorer Resource: PlantGenIE.org . The New phytologist.
Sundell, David and Mannapperuma, Chanaka and Netotea, Sergiu and Delhomme, Nicolas and Lin, Yao-Cheng and Sj{\"o}din, Andreas and Van de Peer, Yves and Jansson, Stefan and Hvidsten, Torgeir R. and Street, Nathaniel R.(2015). The Plant Genome Integrative Explorer Resource : PlantGenIE.org . New Phytologist. 208. (4). p. 1149--1156.
Sundell, David and Mannapperuma, Chanaka and Netotea, Sergiu and Delhomme, Nicolas and Lin, Yao-Cheng and Sj{\"o}din, Andreas and Van de Peer, Yves and Jansson, Stefan and Hvidsten, Torgeir R. and Street, Nathaniel R.(2015). The Plant Genome Integrative Explorer Resource : PlantGenIE.org . New Phytologist. 208. (4). p. 1149--1156.
BOOK CHAPTER
Mannapperuma, Chanaka and Street, Nathaniel and Waterworth, John(2019). Designing Usable Bioinformatics Tools for Specialized Users . Information Technology and Systems : Proceedings of ICITS 2019. (918). p. 649--670.
OTHER
Sundell, David and Street, Nathaniel R and Kumar, Manoj and Mellerowicz, Ewa J and Kucukoglu, Melis and Johnsson, Christoffer and Kumar, Vikash and Mannapperuma, Chanaka and Nilsson, Ove and Tuominen, Hannele and Pesquet, Edouard and Fischer, Urs and Niittyla, Totte and Sundberg, Bjoern and Hvidsten, Torgeir R(2016). High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula .
Mannapperuma, Chanaka(2010). Tangible Social Network System : Visual Markers for Social Network. 0315
Schiffthaler, Bastian and Terebieniec, Barbara K and M{\"a}hler, Niklas and Robinson, Kathryn M and Mannapperuma, Chanaka and Jansson, Stefan and Street, Nathaniel RAn integrated functional genomics and systems genetics analysis of leaf shape in Populus tremula .
Mannapperuma, Chanaka and Waterworth, John and Street, Nathaniel GenIE-Sys : Genome Integrative Explorer System .
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