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Hire Dr. Chamseddine K.

Sweden

Freelance Bioinformatics&Computational analysis | Expert in ChIP&ATAC-seq, microarrays, ontologies & biological network

Profile Summary

I am a senior research who works on genomics, transcription regulation and chromatin-related NGS. I have a PhD in genomics, a MSc in Human Genome and an BSc in Cell and Molecular Biology. My background is both wet lab molecular biology and bioinformatics. I specialise in next generation sequencing methods, including RNA-seq, ChIP-seq, ATAC-seq, as well as microarray analysis. I am proficient in R and Linux and can also use Python. Moreover, I'm experienced in ontolgies, biological pathways and network analysis. I provide consultancy and services in bioinformatics as well as science writing jobs.

Subject Matter Expertise

• ★ Genetics
• ★ Bioinformatics
• ☆ Apoptosis
• ☆ Microarrays
• ☆ Chromatin
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ ChIP-Seq
• ☆ Audio Transcription

Services

• Writing
• Consulting
• Data & AI

Writing Technical Writing

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization

Work Experience

Senior Postdoc

Danmarks Tekniske Universitet

May 2016 - Present

Senior Postdoc

Lunds universitet Biomedicinskt centrum

April 2015 - March 2016

Postdoc

CNRS Délégation Languedoc-Roussillon

May 2012 - February 2015

Education

PhD

Université de Montpellier Faculté de Pharmacie

September 2008 - March 2012

Master of human genome

Université de Monastir Institut Supérieur de Biotechnologie de Monastir

September 2003 - September 2005

Graduate of Biological Sciences

Université de Monastir Institut Supérieur de Biotechnologie de Monastir

September 1999 - June 2003

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

(2020). Identification of novel candidate genes by exome sequencing in Tunisian familial male breast cancer patients . Molecular biology reports.

(2020). Preferential Killing of Tetraploid Colon Cancer Cells by Targeting the Mitotic Kinase PLK1 . Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology.

(2018). Reversine inhibits Colon Carcinoma Cell Migration by Targeting JNK1 . Scientific reports.

(2018). Reversine inhibits Colon Carcinoma Cell Migration by Targeting JNK1 . Scientific reports.

The ROS/SUMO axis contributes to the response of acute myeloid leukemia cells to chemotherapeutic drugs @article{PMID:24910433, Title= {The ROS/SUMO axis contributes to the response of acute myeloid leukemia cells to chemotherapeutic drugs}, Author= {Bossis, Guillaume and Sarry, Jean-Emmanuel and Kifagi, Chamseddine and Ristic, Marko and Saland, Estelle and Vergez, François and Salem, Tamara and Boutzen, Héléna and Baik, Hayeon and Brockly, Frédérique and Pelegrin, Mireia and Kaoma, Tony and Vallar, Laurent and Récher, Christian and Manenti, Stéphane and Piechaczyk, Marc}, DOI= {10.1016/j.celrep.2014.05.016}, Number= {6}, Volume= {7}, Month= {June}, Year= {2014}, Journal= {Cell reports}, ISSN= {2211-1247}, Pages= {1815—1823}, URL= {https://doi.org/10.1016/j.celrep.2014.05.016}} . Cell reports.

19th Congress of the European Hematology Association, Milan, Italy, June 12–15, 2014 @article{PMCID:PMC4060398, Title= {19th Congress of the European Hematology Association, Milan, Italy, June 12–15, 2014}, Author= {Unknown author(s)}, Number= {Suppl 1}, Volume= {99}, Month= {June}, Year= {2014}, Journal= {Haematologica}, ISSN= {0390-6078}, Pages= {1—796}, URL= {http://europepmc.org/articles/PMC4060398}} . Haematologica.

A novel m.12908T>a mutation in the mitochondrial ND5 gene in patient with infantile-onset Pompe disease @article{PMID:23131568, Title= {A novel m.12908T>a mutation in the mitochondrial ND5 gene in patient with infantile-onset Pompe disease}, Author= {Chamkha, Imen and Alila-Fersi, Olfa and Mkaouar-Rebai, Emna and Aloulou, Hajer and Kifagi, Chamseddine and Hachicha, Mongia and Fakhfakh, Faiza}, DOI= {10.1016/j.bbrc.2012.10.105}, Number= {1-2}, Volume= {429}, Month= {December}, Year= {2012}, Journal= {Biochemical and biophysical research communications}, ISSN= {0006-291X}, Pages= {31—38}, URL= {https://doi.org/10.1016/j.bbrc.2012.10.105}} . Biochemical and biophysical research communications.

New mutation c.374C>T and a putative disease-associated haplotype within SCN1B gene in Tunisian families with febrile seizures @article{PMID:21040232, Title= {New mutation c.374C>T and a putative disease-associated haplotype within SCN1B gene in Tunisian families with febrile seizures}, Author= {Fendri-Kriaa, N and Kammoun, F and Salem, I Hadj and Kifagi, C and Mkaouar-Rebai, E and Hsairi, I and Rebai, A and Triki, C and Fakhfakh, F}, DOI= {10.1111/j.1468-1331.2010.03216.x}, Number= {5}, Volume= {18}, Month= {May}, Year= {2011}, Journal= {European journal of neurology}, ISSN= {1351-5101}, Pages= {695—702}, URL= {https://doi.org/10.1111/j.1468-1331.2010.03216.x}} . European journal of neurology.

A case of a Tunisian Rett patient with a novel double-mutation of the MECP2 gene @article{PMID:21575601, Title= {A case of a Tunisian Rett patient with a novel double-mutation of the MECP2 gene}, Author= {Fendri-Kriaa, Nourhene and Hsairi, Ines and Kifagi, Chamseddine and Ellouze, Emna and Mkaouar-Rebai, Emna and Triki, Chahnez and Fakhfakh, Faiza and {Tunisian network on mental retardation study}}, DOI= {10.1016/j.bbrc.2011.04.140}, Number= {2}, Volume= {409}, Month= {June}, Year= {2011}, Journal= {Biochemical and biophysical research communications}, ISSN= {0006-291X}, Pages= {270—274}, URL= {https://doi.org/10.1016/j.bbrc.2011.04.140}} . Biochemical and biophysical research communications.

A novel m.3395A>G missense mutation in the mitochondrial ND1 gene associated with the new tRNA(Ile) m.4316A>G mutation in a patient with hypertrophic cardiomyopathy and profound hearing loss @article{PMID:21144833, Title= {A novel m.3395A>G missense mutation in the mitochondrial ND1 gene associated with the new tRNA(Ile) m.4316A>G mutation in a patient with hypertrophic cardiomyopathy and profound hearing loss}, Author= {Chamkha, Imen and Mkaouar-Rebai, Emna and Aloulou, Hajer and Chabchoub, Imen and Kifagi, Chamseddine and Fendri-Kriaa, Nourhene and Kammoun, Thouraya and Hachicha, Mongia and Fakhfakh, Faiza}, DOI= {10.1016/j.bbrc.2010.12.012}, Number= {1}, Volume= {404}, Month= {January}, Year= {2011}, Journal= {Biochemical and biophysical research communications}, ISSN= {0006-291X}, Pages= {504—510}, URL= {https://doi.org/10.1016/j.bbrc.2010.12.012}} . Biochemical and biophysical research communications.

Association of genetic variations in TCF7L2, SLC30A8, HHEX, LOC387761, and EXT2 with Type 2 diabetes mellitus in Tunisia @article{PMID:21510814, Title= {Association of genetic variations in TCF7L2, SLC30A8, HHEX, LOC387761, and EXT2 with Type 2 diabetes mellitus in Tunisia}, Author= {Kifagi, Chamseddine and Makni, Kaouthar and Boudawara, Mouhamed and Mnif, Fatma and Hamza, Naziha and Abid, Mouhamed and Granier, Claude and Ayadi, Hammadi}, DOI= {10.1089/gtmb.2010.0199}, Number= {6}, Volume= {15}, Month= {June}, Year= {2011}, Journal= {Genetic testing and molecular biomarkers}, ISSN= {1945-0265}, Pages= {399—405}, URL= {https://doi.org/10.1089/gtmb.2010.0199}} . Genetic testing and molecular biomarkers.

(2010). Common polymorphisms of calpain-10 and the risk of Type 2 Diabetes in a Tunisian Arab population: a case-control study . BMC medical genetics.

Proteomic approaches for discovering biomarkers of diabetic nephropathy @article{PMID:20472580, Title= {Proteomic approaches for discovering biomarkers of diabetic nephropathy}, Author= {Ben Ameur, Randa and Molina, Laurence and Bolvin, Capucine and Kifagi, Chamseddine and Jarraya, Fayçal and Ayadi, Hammadi and Molina, Franck and Granier, Claude}, DOI= {10.1093/ndt/gfq258}, Number= {9}, Volume= {25}, Month= {September}, Year= {2010}, Journal= {Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association}, ISSN= {0931-0509}, Pages= {2866—2875}, URL= {http://ndt.oxfordjournals.org/cgi/content/full/25/9/2866}} . Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

Association of calpain-10 polymorphisms with type 2 diabetes in the Tunisian population @article{PMID:18487065, Title= {Association of calpain-10 polymorphisms with type 2 diabetes in the Tunisian population}, Author= {Kifagi, C and Makni, K and Mnif, F and Boudawara, M and Hamza, N and Rekik, N and Abid, M and Rebaï, A and Granier, C and Jarraya, F and Ayadi, H}, DOI= {10.1016/j.diabet.2008.01.007}, Number= {3}, Volume= {34}, Month= {June}, Year= {2008}, Journal= {Diabetes & metabolism}, ISSN= {1262-3636}, Pages= {273—278}, URL= {https://doi.org/10.1016/j.diabet.2008.01.007}} . Diabetes & metabolism.

CONFERENCE PAPER

(2018). The role of the transcription factors Bcl6 and Blimp-1 in intestinal dendritic cell subset specification . European Journal of Immunology.