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Hire Dr. Carole Y. P.

United States

USD 100 /hr

Genomics Core Manager - Expert in Sequencing - Experimental Design

Profile Summary

I am a Sr. Clinical Data & Analytical Specialist and a Genomics core manager. With a PhD in Oncology and Cancer Biology, and 16 years of experience in molecular and cell biology, I specialize in providing comprehensive research support from experimental design to data analysis. My role involves collaborating with researchers to customize workflows, offer training, and ensure high-quality outcomes in NGS (single cell RNA seq, bulk RNA seq, CHIP-seq, ATAC-seq, Cut and Tag, etc.). I am here to help you design and perform your NGS project, from sample collection to library prep and sequencing.

Subject Matter Expertise

• ☆ Biochemistry
• ☆ Immunoassay
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Genomics
• ☆ Epigenetics
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ RNA Synthesis
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ ChIP-Seq
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Microscopy
• ☆ Fluorescence Microscopy
• ☆ Cell Culture
• ☆ Cytometry

Services

• Research

Research User Research, Technology Scouting, Scientific and Technical Research

Work Experience

Sr. Clinical Data and Analytics Specialist

Johns Hopkins All Children's Hospital

June 2023 - Present

Education

PhD

Université Paris Cité

September 2010 - September 2013

MS

École Pratique des Hautes Études

September 2009 - June 2010

Certifications

• Statistics and R

  Harvard X

  June 2023 - Present

Publications

PREPRINT

Merve Uslu, Ran Ran, Mohd Farhan Siddiqui, Jing Liang, Luther Raechal, Matjaz Dogsa, Carole Perrot, Linda Lieberman, Douglas K. Brubaker, Martin Trapecar (2025). Personalized Gut–Liver Microphysiological System Maps Donor-Specific Tissue-Resident Immunity and Reveals a Conserved Metabolic Crosstalk .

JOURNAL ARTICLE

Tourki B, Jia M, Karampitsakos T, Vera IM, Arsenault A, Fatima Z, Perrot CY, Allen D, Farsaei F, Rutenberg D, et al. (2024). Convergent and divergent immune aberrations in COVID-19, post-COVID-19-interstitial lung disease, and idiopathic pulmonary fibrosis . American journal of physiology. Cell physiology.

Perrot CY, Karampitsakos T, Unterman A, Adams T, Marlin K, Arsenault A, Zhao A, Kaminski N, Katlaps G, Patel K, et al. (2024). Mast-cell expressed membrane protein-1 is expressed in classical monocytes and alveolar macrophages in idiopathic pulmonary fibrosis and regulates cell chemotaxis, adhesion, and migration in a TGFβ-dependent manner . American journal of physiology. Cell physiology.

Perrot CY, Karampitsakos T, Herazo-Maya JD (2023). Monocytes and macrophages: emerging mechanisms and novel therapeutic targets in pulmonary fibrosis . American journal of physiology. Cell physiology.

Sawada J, Perrot CY, Chen L, Fournier-Goss AE, Oyer J, Copik A, Komatsu M (2020). High Endothelial Venules Accelerate Naive T Cell Recruitment by Tumor Necrosis Factor-Mediated R-Ras Upregulation . The American journal of pathology.

Perrot CY, Herrera JL, Fournier-Goss AE, Komatsu M (2020). Prostaglandin E2 breaks down pericyte-endothelial cell interaction via EP1 and EP4-dependent downregulation of pericyte N-cadherin, connexin-43, and R-Ras . Scientific reports.

Perrot CY, Sawada J, Komatsu M (2018). Prolonged activation of cAMP signaling leads to endothelial barrier disruption via transcriptional repression of RRAS . FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Perrot CY, Gilbert C, Marsaud V, Postigo A, Javelaud D, Mauviel A (2013). GLI2 cooperates with ZEB1 for transcriptional repression of CDH1 expression in human melanoma cells . Pigment cell & melanoma research.

Perrot CY, Javelaud D, Mauviel A (2013). Insights into the Transforming Growth Factor-β Signaling Pathway in Cutaneous Melanoma . Annals of dermatology.

Perrot CY, Javelaud D, Mauviel A (2012). Overlapping activities of TGF-β and Hedgehog signaling in cancer: therapeutic targets for cancer treatment . Pharmacology & therapeutics.