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Hire Anna M.

Turkey

USD 16 /hr

Biostatistican(7 years of experience)&Data scientist with experince in medicine, molecular biology and bioinformatics

Profile Summary

Biostatistician | Junior data scientist with experience in data analysis and bioinformatics specified in clinical medicine, molecular biology, and genetics. Service offerings: ✅ Analysis of big data (prediction, classification, clusterization) ✅ Statistical reports with visualization ✅ Preparation of protocol for clinical trials ✅ Bioinformatic analysis ✅ Design of laboratory experiments Qualifications: 🔹 Statistical analysis 🔹 EDA 🔹 Machine learning 🔹 Bioinformatics 🔹 Visualization Tools: 🔸 Python (scikit-learn, pandas, numpy, biopython) 🔸 R (bioconductor) 🔸 SQL 🔸 GraphPad 🔸 Mendeley 🔸 Galaxy 🔸 Pathway analysis: GeneAnalytics, WEBGestalt, GSEA 🔸 SnapGene Previous projects: 🧬 Biostatistics and medical research including the creation of diagnostical indexes 🧬 Machine learning and various statistical models in big data (classification, regression, clusterization, optimization of hyperparameters, ensembles) 🧬 RNA, DNA barcode sequencing analysis 🧬 Preparation of protocols for clinical trials including statistical analysis I look forward to working with you. Reach out, and let's get started!

Subject Matter Expertise

• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ PCR
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Data Analysis
• ☆ Machine Learning
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Blotting
• ☆ Python
• ☆ Clinical Trials
• ☆ Clinical Trial Design
• ☆ Clinical Trials Data Analysis

Services

• Writing
• Research
• Consulting
• Data & AI

Research Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Data Cleaning, Data Processing

Work Experience

PhD candidate

Ariel University

June 2022 - July 2023

Education

PhD

Saint Petersburg State University

September 2019 - Present

medical doctor

Saint Petersburg State University

September 2013 - August 2019

Certifications

• IELTS

  British Council

  July 2022 - Present

Publications

JOURNAL ARTICLE

Anna Malkova, Anna Starshinova, Igor Kudryavtsev, Artem Rubinstein, Irina Dovgaluk, Dmitry Kudlay (2023). Tuberculosis and COVID-19 Dually Affect Human Th17 Cell Immune Response . Biomedicines.

Anna Malkova, Анна Старшинова, Igor Kudryavtsev, Artem Rubinstein , Irina Dovgaluk, Dmitry Kudlay (2023). Tuberculosis and COVID-19 Dually Affect Human Th17 Cell Immune Response . Biomedicines.

Anna Malkova, Anna Starshinova, Yulia Zinchenko, Dmitriy Kudlay, Igor Kudryavtsev, Piotr Yablonskiy (2023). Sarcoidosis and Autoimmune Inflammatory Syndrome Induced by Adjuvants . Life.

Anna Malkova, Igor Kudryavtsev, Yulia Zinchenko, Anna Starshinova, Maria Serebriakova, Tatiana Akisheva, Dmitriy Kudlay, Anzhela Glushkova, Piotr Yablonskiy, Yehuda Shoenfeld (2023). Circulating Regulatory T Cell Subsets in Patients with Sarcoidosis . Diagnostics.

Anna Malkova, Анна Старшинова, Ulia Zinchenko, Dmitry Kudlay, Igor Kudryavtsev, Piotr Yablonskiy (2023). Sarcoidosis and Autoimmune Inflammatory Syndrome Induced by Adjuvants . Life.

Anna Malkova, Igor Kudryavtsev, Yuliya Zinchenko, Anna Starshinova, Maria Serebriakova, Tatiana Akisheva, Dmitry Kudlay, Anzhela Glushkova, Piotr Yablonskiy, Yehuda Shoenfeld (2023). Circulating Regulatory T Cell Subsets in Patients with Sarcoidosis . Diagnostics.

Anna Malkova, Elena Vasichkina, Daria Alekseeva, Igor Kudryavtsev, Anzhela Glushkova, Anastasia Y. Starshinova, Dmitry Kudlay, Anna Starshinova (2023). COVID-19 Heart Lesions in Children: Clinical, Diagnostic and Immunological Changes . International Journal of Molecular Sciences.

Anna Malkova, Elena Vasichkina, Daria Alekseeva, Igor Kudryavtsev, Anzhela Glushkova, Anastasia Y. Starshinova, Dmitry Kudlay, Anna Starshinova (2023). COVID-19 Heart Lesions in Children: Clinical, Diagnostic and Immunological Changes . International Journal of Molecular Sciences.

The predictive potential of autoimmune-inflammatory syndrome induced by adjuvants (ASIA) criteria to assess the risk of adverse events and efficacy of immune checkpoint inhibitor therapy <head> <META HTTP-EQUIV="Refresh" CONTENT="0;URL=/servlet/useragent"> </head> . Immunologic Research.

Anna Malkova, Anna Starshinova, Ulia Zinchenko, Sergey Lapin, Alexandra Mazing, Dmitry Kudlay, Piotr Yablonskiy, Yehuda Shoenfeld (2022). Detection of Anti-Vimentin Antibodies in Patients with Sarcoidosis . Diagnostics.

Anna Malkova, Анна Старшинова, Ulia Zinchenko, Sergey Lapin, Alexandra Mazing, Dmitry Kudlay, Piotr Yablonskiy, Yehuda Shoenfeld (2022). Detection of Anti-Vimentin Antibodies in Patients with Sarcoidosis . Diagnostics.

N. V. Zhukova, R. V. Orlova, E. A. Kaledina, P. A. Naymushina, A. M. Malkova, N. P. Beliak (2022). Key differences between anti-PD-1/PD-L1 inhibitors . Meditsinskiy sovet = Medical Council.

A. M. Malkova, R. V. Orlova, N. V. Zhukova, A. R. Gubal, V. V. Sharoiko (2022). Analysis of possible markers of effective antitumor cellular immune response before starting therapy with immune check-point inhibitors . Siberian journal of oncology.

Anna Malkova, Anna A. Starshinova, Igor Kudryavtsev, Ulia Zinchenko, Vadim Karev, Dmitry Kudlay, Angela Glushkova, Anastasiya Y. Starshinova, Jose Dominguez, Raquel Villar-Hern&#225;ndez, et al.(2022). Molecular and Cellular Mechanisms of M. tuberculosis and SARS-CoV-2 Infections—Unexpected Similarities of Pathogenesis and What to Expect from Co-Infection . International Journal of Molecular Sciences. 23. (4). p. 2235. {MDPI} {AG}

Anna Malkova, Anna A. Starshinova, Igor Kudryavtsev, Ulia Zinchenko, Vadim Karev, Dmitry Kudlay, Angela Glushkova, Anastasiya Y. Starshinova, Jose Dominguez, Raquel Villar-Hern&#225;ndez, et al. (2022). Molecular and Cellular Mechanisms of <i>M. tuberculosis</i> and SARS-CoV-2 Infections&mdash;Unexpected Similarities of Pathogenesis and What to Expect from Co-Infection . International Journal of Molecular Sciences.

Anna Malkova, Natalia Gavrilova, Anna Starshinova, Yulia Zinchenko, Dmitry Kudlay, Valeria Shapkina, Ekaterina Belyaeva, Maria Pavlova, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Small Fiber Neuropathy in Sarcoidosis . Pathophysiology.

Anna Malkova, Natalia Gavrilova, Анна Старшинова, Ulia Zinchenko, Dmitry Kudlay, Valeria Shapkina, Ekaterina Belyaeva, Maria Pavlova, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Small Fiber Neuropathy in Sarcoidosis . Pathophysiology.

R. V. Orlova, N. V. Zhukova, A. M. Malkova, E. A. Kaledina, A. R. Gubal, V. V. Sharoiko (2021). Comparative analysis of IL-1β blood serum concentration, neutrophil-to-lymphocytes ratio in peripheral blood, and the levels of PD-L1 expression in malignant tissues of the patients with various solid tumors . Medical Immunology (Russia).

Annа Malkova, Igor Kudryavtsev, Anna Starshinova, Dmitry Kudlay, Yulia Zinchenko, Anzhela Glushkova, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Post COVID-19 Syndrome in Patients with Asymptomatic/Mild Form . Pathogens.

Anna Malkova, Igor Kudryavtsev, Anna Starshinova, Dmitry Kudlay, Ulia Zinchenko, Anzhela Glushkova, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Post COVID-19 Syndrome in Patients with Asymptomatic/Mild Form . Pathogens.

Olga V. Mikolaichuk and Vladimir V. Sharoyko and Elena A. Popova and Alexandra V. Protas and Alexander V. Fonin and Lubov V. Vasina and Yurii A. Anufrikov and Mikhail D. Luttsev and Iuliia A. Nashchekina and Anna M. Malkova and Grigorii V. Tochilnikov and Sergei V. Ageev and Konstantin N. Semenov(2021). Biocompatibility and bioactivity study of a cytostatic drug belonging to the group of alkylating agents of the triazine derivative class . Journal of Molecular Liquids. p. 117630. Elsevier {BV}

R. V. Orlova, E. A. Kaledina, A. M. Malkova, N. V. Zhukova, P. A. Naymushina, N. P. Beliak, A. E. Jukova, A. S. Sarmatova, N. A. Karaseva, I. V. Egorova, et al. (2021). Limitations and opportunities of cancer treatment in the COVID-19 pandemic . Meditsinskiy sovet = Medical Council.

Anna Malkova, Anna Starshinova, Ulia Zinchenko, Dmitry Kudlay, Anzhela Glushkova, Irina Dovgalyk, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Efficacy of Different Types of Therapy for COVID-19: A Comprehensive Review . Life.

Anna Malkova, Anna Starshinova, Ulia Zinchenko, Dmitry Kudlay, Anzhela Glushkova, Irina Dovgalyk, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Efficacy of Different Types of Therapy for COVID-19: A Comprehensive Review . Life.

A. Malkova, A. Starshinova, Y. Zinchenko, N. Gavrilova, I. Kudryavtsev, S. Lapin, A. Mazing, E. Surkova, M. Pavlova, E. Belaeva, et al.(2021). New laboratory criteria of the autoimmune inflammation in pulmonary sarcoidosis and tuberculosis . Clinical Immunology. 227. p. 108724. Elsevier {BV}

Anna Malkova, Dmitriy Kudlay, Igor Kudryavtsev, Anna Starshinova, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Immunogenetic Predictors of Severe COVID-19 . Vaccines.

Anna Malkova, Dmitry Kudlay, Igor Kudryavtsev, Анна Старшинова, Piotr Yablonskiy, Yehuda Shoenfeld (2021). Immunogenetic Predictors of Severe COVID-19 . Vaccines.

(2020). Imbalance in B cell and T Follicular Helper Cell Subsets in Pulmonary Sarcoidosis . Scientific Reports.

Anna Malkova, V&#226;nia Borba, Natalia Basantsova, Gilad Halpert, Laura Andreoli, Angela Tincani, Howard Amital, Yehuda Shoenfeld(2020). Classical Examples of the Concept of the ASIA Syndrome . Biomolecules. 10. (10). p. 1436. {MDPI} {AG}

Anna Malkova, V&#226;nia Vieira Borba, Natalia Gavrilova, Gilad Halpert, Laura ANDREOLI, Angela Tincani, Howard Amital, Yehuda Shoenfeld (2020). Classical Examples of the Concept of the ASIA Syndrome . Biomolecules.

(2020). The opposite effect of human leukocyte antigen genotypes in sarcoidosis and tuberculosis: a narrative review of the literature . ERJ Open Research.

(2020). New Coronaviral Infection: Features of Clinical Course, Capabilities of Diagnostics, Treatment and Prevention in Adults and Children . Current Pediatrics.

(2020). Autoimmune component in the etiology of sarcoidosis . Tuberculosis and Lung Diseases.

(2020). Sarcoidosis as an Autoimmune Disease . Frontiers in Immunology.

(2019). CHARACTERISTICS OF AUTOIMMUNE INFLAMMATION IN THE PATIENTS WITH LUNG TUBERCULOSIS . Medical Immunology (Russia).

Recombinant tuberculosis allergen (Diaskintest®) in tuberculosis diagnostic in Russia (Meta‑Analysis). Int J Mycobacteriol.

PREPRINT

Anna Malkova, Anna Starshinova, Ulia Zinchenko, Sergey Lapin, Alexandra Mazing, Dmitry Kudlay, Piotr Yablonskiy, Yehuda Shoenfeld (2022). Detection of Antibodies in Patients with Sarcoidosis .

Anna Malkova, Rashida Orlova, Natalia Zhukova, Ekaterina Kaledina, Alexandra Demchenkova, Polina Naymushina, Vladimir Sharoyko (2022). Clinical and pathogenetic relationship between IL-1β and IL-8 in melanoma .

CONFERENCE PAPER

A.M. Malkova and R.V. Orlova and N.V. Zhukova and V.V. Sharoyko and E.A. Kaledina and A. Gubal(2020). 40P Correlation of IL-1-β-serum concentration with the number of leukocytes in peripheral blood in patients with solid tumours before immune checkpoint inhibitors therapy . Annals of Oncology. 31. p. S1229. Elsevier {BV}

OTHER

Anna Malkova, Anna Starshinova, Yulia Zinchenko, Natalia Basantsova, Igor Kudryavtsev, Sergey Lapin, Alexandra Mazing, Elena Surkova, Maria Pavlova, Ekaterina Belyaeva, et al.(2020). New laboratory criterion for the differential diagnosis of sarcoidosis and pulmonary tuberculosis . Research Square

Anna Malkova, Anna Starshinova, Yulia Zinchenko, Natalia Basantsova, Igor Kudryavtsev, Sergey Lapin, Alexandra Mazing, Elena Surkova, Maria Pavlova, Ekaterina Belyaeva, et al.(2020). New Laboratory Criterion for the Differential Diagnosis of Sarcoidosis and Pulmonary Tuberculosis . Research Square

CONFERENCE ABSTRACT

(2019). Autoantibodies to vimentin different modifications in patients with tuberculosis and different granulomatous lung diseases . Tuberculosis.

(2019). Imbalance in memory B-cells in patients with pulmonary sarcoidosis . Airway cell biology and immunopathology.

(2019). Detection of various autoantibodies in patients with pulmonary sarcoidosis . Sarcoidosis and other granulomatous ILD/DPLD.

WORKING PAPER

Detection of Antibodies in Patients with Sarcoidosis .