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Hire Dr. Ali Hassan Ali E.

Egypt

USD 38 /hr

Bioinformatics specialist | Expert in metagenomics

Profile Summary

I'm a bioinformatics specialist, particularly interested in metagenomics. As a postdoc at the Institute of Virology, Helmholtz Zentrum München, I investigate the role of viruses, especially bacteriophages and their interplay with bacteria to maintain the balance of different ecosystems, whether in the environment or in clinical contexts. In my PhD, I studied antibiotic resistance in Red Sea brine pools. I also set some guidelines for more accurate identification of antibiotic resistance genes in metagenomes. I also have good experience in microbiology and molecular biology.

Subject Matter Expertise

• ☆ Microbiology
• ☆ Molecular Biology
• ☆ Bioinformatics
• ☆ Antibiotic Development

Services

• Consulting
• Data & AI
• Product Development

Work Experience

Postdoctoral fellow

Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) - Institut für Virologie

December 2016 - Present

Education

PhD

The American University in Cairo

January 2013 - May 2016

MSc

Ghent University

September 2009 - July 2011

BSc Pharmaceutical Sciences

Ain Shams University

September 2001 - June 2006

Certifications

• Certification details not provided.

Publications

OTHER

Aly O. Abdelkareem, Mahmoud I. Khalil, Ali H. A. Elbehery, Hazem M. Abbas(2020). Viral Sequence Identification in Metagenomes using Natural Language Processing Techniques . Cold Spring Harbor Laboratory

Aly O. Abdelkareem, Mahmoud I. Khalil, Mostafa Elaraby, Hazem Abbas, Ali H. A. Elbehery(2018). {VirNet}: Deep attention model for viral reads identification . {IEEE}

JOURNAL ARTICLE

Ma, T., Jiang, Y., Elbehery, A.H.A., Blank, S., Kurmayer, R., Deng, L.(2020). Resilience of planktonic bacterial community structure in response to short-term weather deterioration during the growing season in an alpine lake . Hydrobiologia. 847. (2). p. 535-548.

Ali H. A. Elbehery, Judith Feichtmayer, Dave Singh, Christian Griebler, Li Deng(2018). The Human Virome Protein Cluster Database ({HVPC}): A Human Viral Metagenomic Database for Diversity and Function Annotation . Frontiers in Microbiology. 9. Frontiers Media {SA}

Simon, L.M., Karg, S., Westermann, A.J., Engel, M., Elbehery, A.H.A., Hense, B., Heinig, M., Deng, L., Theis, F.J.(2018). MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data . GigaScience. 7. (6).

Elbehery, A.H.A., Feichtmayer, J., Singh, D., Griebler, C., Deng, L.(2018). The human virome protein cluster database (HVPC): A human viral metagenomic database for diversity and function annotation . Frontiers in Microbiology. 9. (MAY).

Mustafa Adel, Ali H. A. Elbehery, Sherry K. Aziz, Ramy K. Aziz, Hans-Peter Grossart, Rania Siam(2016). Viruses-to-mobile genetic elements skew in the deep Atlantis {II} brine pool sediments . Scientific Reports. 6. p. 32704. Springer Nature

Ali H. A. Elbehery, Ramy K. Aziz, Rania Siam(2016). Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics . {OMICS}: A Journal of Integrative Biology. 20. (4). p. 229--238. Mary Ann Liebert Inc

Adel, M., Elbehery, A.H.A., Aziz, S.K., Aziz, R.K., Grossart, H.-P., Siam, R.(2016). Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments . Scientific Reports. 6.

Ali H. A. Elbehery, David J. Leak, Rania Siam(2016). Novel thermostable antibiotic resistance enzymes from the Atlantis {II} Deep Red Sea brine pool . Microbial Biotechnology. 10. (1). p. 189--202. Wiley-Blackwell

Ali H. A. Elbehery, Ramy K. Aziz, Rania Siam(2016). Insertion sequences enrichment in extreme Red sea brine pool vent . Extremophiles. 21. (2). p. 271--282. Springer Nature

Hassan M.E. Azzazy, Ali H.A. Elbehery(2015). Clinical laboratory data: acquire, analyze, communicate, liberate . Clinica Chimica Acta. 438. p. 186--194. Elsevier {BV}

Ali H. A. Elbehery, Hassan M. E. Azzazy(2014). Nanoparticle-based detection of cancer-associated {RNA} . {WIREs} Nanomed Nanobiotechnol. 6. (4). p. 384--397. Wiley-Blackwell

CONFERENCE PAPER

Abdelkareem, A.O., Khalil, M.I., Elaraby, M., Abbas, H., Elbehery, A.H.A.(2019). VirNet: Deep attention model for viral reads identification . Proceedings - 2018 13th International Conference on Computer Engineering and Systems, ICCES 2018. p. 623-626.