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Hire Dr. Ahmad M.

United States

USD 25 /hr

Bioinformatician Data scientist Expert in Omics Data NGS Linux R Python and Machine learning

Profile Summary

M.Sc. Bioinformatician & Software Engineer bridging computer science and high-throughput biology with 10+ years of experience in AI/ML (PyTorch, TensorFlow, LLM agents, RAG), Multi-Omics/NGS pipelines (Bulk/Single-Cell RNA-Seq, ATAC-Seq, WES, WGS using Seurat & Scanpy), Drug/Protein design (Boltz-2, ColabFold, DiffDock, RDKit), and software engineering (Linux, Docker, Git, Snakemake, Python/R/Bash scripting).

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Biostatistics
• ☆ Cell Biology
• ☆ Stem Cell Research
• ☆ Data Analysis
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Data Visualization
• ☆ Data Collection
• ☆ Data Management
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Decision Science
• ☆ Drug Discovery
• ☆ High Throughput Screening (HTS)
• ☆ Drug Target Identification
• ☆ Drug Design

Services

• Writing
• Research
• Data & AI

Writing Medical Writing, Creative Writing

Research Market Research, User Research, Meta-Research, Feasibility Study

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics, Data Mining

Work Experience

Data Scientist

Prepaire Lab. UAE

April 2025 - March 2026

Data scientisit

ULB

February 2022 - January 2023

Education

PhD bioinformatics

Université Libre de Bruxelles

December 2021 - December 2025

Msc in software engineering

Islamic Azad University, Central Tehran Branch - Iran

September 2016 - October 2019

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Jahangiri, Sepideh, Abdan, Zahra, Totonchi, Mehdi, Allahmoradi, Fariba, Mousavi, Seyed Ahmad, Aznab, Mozaffar, Kobraei, Majid, Padidar, Kimiya(2025). Missense genetic variant in IQCA1 gene in patients with meningioma. Acta Neurologica Belgica. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1--9. Springer

Simorgh, Susan, Mousavi, Seyed Ahmad, Pasque, Vincent, Wierda, Keimpe, Vervliet, Tim, Yeganeh, Meghdad, Pooyan, Paria, Chai, Yoke Chin, Verfaillie, Catherine, Baharvand, Hossein, et al.(2023). A facile method to generate cerebral organoids from human pluripotent stem cells. EXCLI Journal. 22. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1055--1076.

Naderi, Somayeh, Shiri, Zahra, Zarei-Kheirabadi, Masoumeh, Mollamohammadi, Sepideh, Hosseini, Parastoo, Rahimi, Golnoosh, Moradmand, Azadeh, Samadian, Azam, Shojaei, Amir, Yeganeh, Meghdad, et al.(2023). Cryopreserved clinical-grade human embryonic stem cell-derived dopaminergic progenitors function in Parkinson's disease models. Life Sciences. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 121990. Elsevier

Saber, Maryam, Shekari, Faezeh, Mousavi, Seyed-Ahmad, Moini, Ashraf, Miri, Monireh-Sadat, Esfandiari, Fereshteh(2023). JAK/STAT3 pathway promotes proliferation of ovarian aggregate-derived stem cells in vitro. Experimental Cell Research. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 113689. Elsevier

Hesaraki, Mahdi, Bora, Ugur, Pahlavan, Sara, Salehi, Najmeh, Mousavi, Seyed Ahmad, Barekat, Maryam, Rasouli, Seyed Javad, Baharvand, Hossein, Ozhan, Gunes, Totonchi, Mehdi(2022). A Novel Missense Variant in Actin Binding Domain of MYH7 Is Associated With Left Ventricular Noncompaction. Frontiers in Cardiovascular Medicine. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 576. Frontiers

Abdolahzadeh, Hadis, Mohammadi, Parvaneh, Ghasemi, Mahshid, Mousavi, Seyed Ahmad, Bajouri, Amir, Ataei-Fashtami, Leila, Totonchi, Mehdi, Rezvani, Mohammad, Aghdami, Nasser, Shafieyan, Saeed(2022). Comparison of Skin Transcriptome between Responder and Non-Responder Vitiligo Lesions to Cell Transplantation: A Clinical Trial Study. Cell Journal (Yakhteh). 24. (6).

Farhadi, Aisan, Totonchi, Mehdi, Nabavi, Seyed Masood, Baharvand, Hossein, Pakdaman, Hossein, Hajizadeh-Saffar, Ensiyeh, Mousavi, Seyed Ahmad, Hadi, Fatemeh, Al-Sinawi, Hamed, Li, Quan, et al.(2022). P38 Initiates Degeneration of midbrain GABAergic and Glutamatergic Neurons in Diabetes Models. European Journal of Neuroscience. Wiley Online Library

Ghiasvand, Saeedeh, Javidi, Mohammad Amin, Mohammadian, Ali, Mousavi, Seyed Ahmad, Shahriari, Fatemeh, Alavian, Firoozeh(2021). Transcriptome analysis evinces anti-neoplastic mechanisms of hypericin: A study on U87 glioblastoma cell line. Life Sciences. 266. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 118874. Elsevier

Nejad, S Mohammadi, Hodjat, M, Mousavi, SA, Baeeri, M, Rezvanfar, MA, Rahimifard, M, Sabuncuoglu, S, Abdollahi, M(2020). Alteration of gene expression profile in mouse embryonic stem cells and neural differentiation deficits by ethephon. Human & Experimental Toxicology. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 0960327120930255. SAGE Publications Sage UK: London, England

Abazari, Mohammad Foad, Soleimanifar, Fatemeh, Enderami, Seyed Ehsan, Nasiri, Navid, Nejati, Fatemeh, Mousavi, Seyed Ahmad, Soleimani, Masoud, Kiani, Jafar, Ghoraeian, Pegah, Kehtari, Mousa(2019). Decellularized amniotic membrane Scaffolds improve differentiation of iPSCs to functional hepatocyte-like cells. Journal of cellular biochemistry. Wiley Online Library

Pormehr, Leila Azizzadeh, Ahmadian, Shahin, Daftarian, Narsis, Mousavi, Seyed Ahmad, Shafiezadeh, Mahshid(2019). PRPF31 reduction causes mis-splicing of the phototransduction genes in human organotypic retinal culture. European Journal of Human Genetics. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1--8. Nature Publishing Group

Mansour, Reyhaneh Nassiri, Soleimanifar, Fatemeh, Abazari, Mohamad Foad, Torabinejad, Sepehr, Ardeshirylajimi, Abdolreza, Ghoraeian, Pegah, Mousavi, Seyed Ahmad, Sharif Rahmani, Edris, Hassannia, Hadi, Enderami, Seyed Ehsan(2018). Collagen coated electrospun polyethersulfon nanofibers improved insulin producing cells differentiation potential of human induced pluripotent stem cells. Artificial cells, nanomedicine, and biotechnology. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1--6. Taylor \& Francis

An, Yang, Kawaguchi, Akane, Zhao, Chen, Toyoda, Atsushi, Sharifi-Zarchi, Ali, Mousavi, Seyed Ahmad, Bagherzadeh, Reza, Inoue, Takeshi, Ogino, Hajime, Fujiyama, Asao, et al.(2018). Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians. Zoological Letters. 4. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 24. Springer

Daftarian, Narsis, Pormehr, Leila Azizzadeh, Ahmadian, Shahin, Rivolta, Carlo, Mousavi, Seyed Ahmad, Rezaeikanavi, Mozhgan, Ahmadieh, Hamid(2018). PRPF31 deficiency implicates key genes and pathways of photo-transduction as its tissue specific role (Proof-of-concept mechanism study in an ex-vivo model of RP11). Investigative Ophthalmology & Visual Science. 59. (9). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2327--2327. The Association for Research in Vision and Ophthalmology

Mansouri, Mehdi, Naghavi, Mohammad Reza, Alizadeh, Hoshang, Mohammadi-Nejad, Ghasem, Mousavi, Seyed Ahmad, Salekdeh, Ghasem Hosseini, Tada, Yuichi(2018). Transcriptomic analysis of Aegilops tauschii during long-term salinity stress. Functional & Integrative Genomics. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1--16. Springer

Al-Husini, Nadra, Sharifi, Ali, Mousavi, Seyed Ahmad, Chitsaz, Hamidreza, Ansari, Athar(2017). Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast. Scientific reports. 7. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 6894. Nature Publishing Group

Mansouri, Mehdi, Naghavi, Mohamad Reza, Alizadeh, Houshang, Mohammadinejad, Ghasem, Mousavi, Seyed Ahmad, Salekdeh, GH, others(2016). Expression profiling of genes involved in signaling process in Aegilops tauschii under salinity stress. Iranian Journal of Field Crop Science. 47. (2). University of Tehran

Mousavi, Seyed Ahmad, Pouya, Farhad Movahedi, Ghaffari, Mohammad Reza, Mirzaei, Mehdi, Ghaffari, Akram, Alikhani, Mehdi, Ghareyazie, Mohammad, Komatsu, Setsuko, Haynes, Paul A, Salekdeh, Ghasem Hosseini(2016). PlantPReS: A database for plant proteome response to stress. Journal of proteomics. 143. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 69--72. Elsevier

Vahdat, Sadaf, Mousavi, Seyed Ahmad, Omrani, Gholamreza, Gholampour, Maziar, Sotoodehnejadnematalahi, Fattah, Ghazizadeh, Zaniar, Gharechahi, Javad, Baharvand, Hossein, Salekdeh, Ghasem Hosseini, Aghdami, Nasser(2015). Cellular and molecular characterization of human cardiac stem cells reveals key features essential for their function and safety. Stem cells and development. 24. (12). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1390--1404. Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA

Tabar, M Sharifi, Vakilian, H, Alikhani, M, Jangravi, Z, Rastegar, D Ahmadi, Karamzadeh, M, Arefnezhad, B, Mirshahvaladi, Sh, Taleahmad, S, Matin, P Parsa, et al.(2013). Exploring New Frontiers in Human Y Chromosome Proteome Project. International Journal of Fertility & Sterility. 7. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 26. Royan Institute of Iran

Vakilian, H, Alikhani, M, Jangravi, Z, Karamzadeh, R, Arefnezhad, B, Sh, Mirshahvaladi, Taleahmad, S, Mousavi, SA, Pooyan, P, Sabbaghian, M, et al.(2013). I-39: Exploring New Frontiers in Human Y Chromosome Proteome Project. International Journal of Fertility and Sterility. 7. (3). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 18--18. Royan Institute, Iranian Academic Center for Education Culture and Research~…

Jangravi, Zohreh, Alikhani, Mehdi, Arefnezhad, Babak, Sharifi Tabar, Mehdi, Taleahmad, Sara, Karamzadeh, Razieh, Jadaliha, Mahdieh, Mousavi, Seyed Ahmad, Ahmadi Rastegar, Diba, Parsamatin, Pouria, et al.(2012). A fresh look at the male-specific region of the human Y chromosome. Journal of proteome research. 12. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 6--22. ACS Publications