Profile Details

Create Project

★★★★★

☆☆☆☆☆

USD 150 /hr

★★★★★

☆☆☆☆☆

Hire Dr. Abtin T.

United States

USD 150 /hr

Bioinformatics Scientist | Genomics, Transcriptomics, Machine Learning & Computational Biology

Profile Summary

Bioinformatics scientist and former Stanford research fellow with extensive experience in computational biology, genomics, transcriptomics, machine learning, and biomedical data analysis. My work spans cancer bioinformatics, differential gene expression analysis, biomarker discovery, molecular data interpretation, predictive modeling, and computational drug discovery. I have experience developing and applying machine learning and deep learning models to complex biological and healthcare datasets, including genomic and transcriptomic data. I also work with scientific literature, research design, statistical analysis, data interpretation, scientific writing, and publication-oriented projects. I can support projects involving bioinformatics analysis, RNA-seq and gene expression analysis, genomics, computational biology, biomedical machine learning, biomarker identification, oncology research, data analysis, scientific consulting, research strategy, and manuscript development. My focus is on delivering scientifically rigorous, clearly documented, and practical results that clients can use for research, publication, product development, or strategic decision-making.

Subject Matter Expertise

• ☆ Chemoinformatics
• ☆ Computational Biology
• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Genomics
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Cytochemistry
• ☆ Cytogenetics
• ☆ Cell Signaling Pathways
• ☆ Membrane Biology
• ☆ Gene Regulation
• ☆ Stem Cell Research
• ☆ Biotechnology & Bioengineering
• ☆ Recombinant Protein Expression
• ☆ Bioinformatics
• ☆ Cell Culture
• ☆ Primary Cells
• ☆ Cell Banking
• ☆ Cell Line Engineering
• ☆ Large Scale Cell Culture
• ☆ Industrial Biotechnology
• ☆ Tissue Engineering
• ☆ Python
• ☆ Java
• ☆ Drug Discovery
• ☆ Drug Design
• ☆ Drug Development
• ☆ Small Molecule Drug Development
• ☆ Drug-Drug Interactions
• ☆ Pharmacogenomics
• ☆ Hypothesis
• ☆ Peer Review
• ☆ Research Methodology
• ☆ Survey Design & Methodology
• ☆ Fact Checking
• ☆ Literature Search
• ☆ Gap Analysis
• ☆ Gray Literature Search
• ☆ Technical & Scientific Writing
• ☆ Journal Selection
• ☆ Manuscript & Journal Article Writing
• ☆ Instructional Materials
• ☆ Release Notes
• ☆ Experimental Protocols
• ☆ SOP & Protocol Writing
• ☆ White Papers
• ☆ Textbook Content Writing
• ☆ Science Communication
• ☆ Literature Review
• ☆ Traditional/Narrative Literature Review
• ☆ Systematic Literature Review
• ☆ Scientific Proofreading & Editing
• ☆ Proofreading & Editing
• ☆ Language Translation
• ☆ Business Operations
• ☆ Small Business
• ☆ Data-Driven Decision Making
• ☆ Entrepreneurship
• ☆ Business Intelligence

Services

• Writing
• Consulting
• Data & AI

Writing Technical Writing

Consulting Business Strategy Consulting, Healthcare Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Data Visualization, Big Data Analytics, Data Mining, Data Processing

Work Experience

Stanford University

- Present

Scientific researchers

Stanford University

January 2022 - April 2026

Education

Stanford University

- Present

Ph.D. in Bioinformatics

University of Barcelona

January 2021 - September 2026

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

(2026). Concordant Shared Transcriptomic Signatures and Candidate Regulatory Features in Chronic Lymphocytic Leukemia and Multiple Myeloma . ONCOLOGY RESEARCH.

Tondar, A., Marín, D.H., Liñán, L.C., Bepari, A.K.(2026). Concordant Shared Transcriptomic Signatures and Candidate Regulatory Features in Chronic Lymphocytic Leukemia and Multiple Myeloma . Oncology Research. 34. (9).

Abtin Tondar, Muhammad Irfan, Sergio Sánchez-Herrero, Hafsa Athar, Aleena Haqqi, Asim Kumar Bepari, Laura Calvet Liñán, David Hervás Marin (2025). In-silico structural and functional analysis of nonsynonymous single nucleotide polymorphisms in human FOLH1 gene . In Silico Pharmacology.

(2025). Achieving inclusive healthcare through integrating education and research with AI and personalized curricula . COMMUNICATIONS MEDICINE.

Bahmani, A., Cha, K., Alavi, A., Dixit, A., Ross, A., Park, R., Goncalves, F., Ma, S., Saxman, P., Nair, R., et al.(2025). Achieving inclusive healthcare through integrating education and research with AI and personalized curricula . Communications Medicine. 5. (1).

Tondar A, Sánchez-Herrero S, Bepari AK, Bahmani A, Calvet Liñán L, Hervás-Marín D (2024). Virtual Screening of Small Molecules Targeting BCL2 with Machine Learning, Molecular Docking, and MD Simulation . Biomolecules.

(2024). Achieving Inclusive Healthcare through Integrating Education and Research with AI and Personalized Curricula . medRxiv.

(2024). Forecasting Survival Rates in Metastatic Colorectal Cancer Patients Undergoing Bevacizumab-Based Chemotherapy: A Machine Learning Approach . BIOMEDINFORMATICS.

Sánchez-Herrero, S., Tondar, A., Perez-Bernabeu, E., Calvet, L., Juan, A.A.(2024). Forecasting Survival Rates in Metastatic Colorectal Cancer Patients Undergoing Bevacizumab-Based Chemotherapy: A Machine Learning Approach . Biomedinformatics. 4. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 733-753.

(2024). Virtual Screening of Small Molecules Targeting BCL2 with Machine Learning, Molecular Docking, and MD Simulation . BIOMOLECULES.

Tondar, A., Sánchez-Herrero, S., Bepari, A.K., Bahmani, A., Calvet Liñán, L., Hervás-Marín, D.(2024). Virtual Screening of Small Molecules Targeting BCL2 with Machine Learning, Molecular Docking, and MD Simulation . Biomolecules. 14. (5).

(2023). Data science, analytics and artificial intelligence in e-health: trends, applications and challenges . SORT-STATISTICS AND OPERATIONS RESEARCH TRANSACTIONS.

Castaneda, J., Calvet, L., Benito, S., Tondar, A., Juan, A.A.(2023). Data science, analytics and artifcial intelligence in e-health: trends, applications and challenges . Sort. 47. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 81-128.

(2023). MOVING THE NEEDLE FOR CELL THERAPIES: A NEXT-GENERATION EX VIVO PLATFORM USING NANONEEDLES FOR PRECISION CARGO DELIVERY. CYTOTHERAPY.

(2023). Silicon Nanoneedle-Mediated Cargo Delivery for Cell Engineering. MOLECULAR THERAPY.

(2023). Utilizing Surface-Functionalized Nanoneedles for <i>Ex Vivo</i> Physical Cargo Delivery into Cells. MOLECULAR THERAPY.

(2021). SUPPORTING EFFICIENT ASSIGNMENT OF MEDICAL RESOURCES IN CANCER TREATMENTS WITH SIMULATION-OPTIMIZATION . 2021 WINTER SIMULATION CONFERENCE, WSC.

(2019). Nanoconjugates for normalization of cultured human diabetic limbal epithelial cells and organ-cultured corneas by gene therapy. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE.

(2017). Four novel <i>ARSA</i> gene mutations with pathogenic impacts on metachromatic leukodystrophy: a bioinformatics approach to predict pathogenic mutations . THERAPEUTICS AND CLINICAL RISK MANAGEMENT.

(2017). Nitric oxide pathway presumably does not contribute to antianxiety and memory retrieval effects of losartan . BEHAVIOURAL PHARMACOLOGY.

(2016). Electromagnetic Fields and Stem Cell Fate: When Physics Meets Biology . REVIEWS OF PHYSIOLOGY, BIOCHEMISTRY AND PHARMACOLOGY, VOL 171.

(2016). Exosome-inspired targeting of cancer cells with enhanced affinity . JOURNAL OF MATERIALS CHEMISTRY B.

(2016). Understanding biophysical behaviours of microfluidic-synthesized nanoparticles at nano-biointerface . COLLOIDS AND SURFACES B-BIOINTERFACES.

(2015). Four Novel p.N385K, p.V36A, c.1033-1034insT and c.1417-1418delCT Mutations in the Sphingomyelin Phosphodiesterase 1 (<i>SMPD1</i>) Gene in Patients with Types A and B Niemann-Pick Disease (NPD) . INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES.

(2015). Generation of eye field/optic vesicle-like structures from human embryonic stem cells under two-dimensional and chemically defined conditions . IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL.

(2015). Human Adipocyte Derived Mesenchymal Stem cell supports keratinocyte growth in a modified Collagen-Hyalorunic acid matrix. BONE MARROW TRANSPLANTATION.

(2015). Oral consumption of α-linolenic acid increases serum BDNF levels in healthy adult humans . NUTRITION JOURNAL.

(2015). The therapeutic potential of berberine against the altered intrinsic properties of the CA1 neurons induced by Aβ neurotoxicity . EUROPEAN JOURNAL OF PHARMACOLOGY.

(2014). A newly identified c.1824_1828dupATACG mutation in exon 13 of the <i>GAA</i> gene in infantile-onset glycogen storage disease type II (Pompe disease) . MOLECULAR BIOLOGY REPORTS.

(2014). FEASIBILITY OF CLINOPTILOLITE APPLICATION AS A MICROPOROUS CARRIER FOR PH-CONTROLLED ORAL DELIVERY OF METRONIDAZOLE . SPECIAL TOPICS & REVIEWS IN POROUS MEDIA-AN INTERNATIONAL JOURNAL.

(2014). Human Pluripotent Stem Cell-Derived Retinal Pigmented Epithelium in Retinal Treatment: from Bench to Bedside . MOLECULAR NEUROBIOLOGY.

(2014). Two Novel Tyrosinase (<i>TYR</i>) Gene Mutations with Pathogenic Impact on Oculocutaneous Albinism Type 1 (OCA1) . PLOS ONE.

(2012). SILENT ABSTRACT. IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL.

(2011). Effect of Mozart Music on Hippocampal Content of BDNF in Postnatal Rats. BASIC AND CLINICAL NEUROSCIENCE.

OTHER

Bahmani, A., Cha, K., Alavi, A., Dixit, A., Ross, A., Park, R., Goncalves, F., Ma, S., Saxman, P., Nair, R., et al.(2024). Achieving Inclusive Healthcare through Integrating Education and Research with AI and Personalized Curricula . Medrxiv.

CONFERENCE PAPER

Martins, L.D.C., Castaneda, J., Juan, A.A., Tondar, A., Calvet, L., Barrios, B.B., Sanchez-Garcia, J.L.(2021). Supporting Efficient Assignment of Medical Resources in Cancer Treatments with Simulation-Optimization . Proceedings Winter Simulation Conference. 2021-December.