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Hire Dr. Abhishake L.

India

USD 40 /hr

Freelance Bioinformatician | NGS Data Analysis, Metagenomics & Machine Learning Expert

Profile Summary

I am a PhD-level bioinformatician specializing in microbial genomics and machine learning. My passion is helping researchers and biotech companies transform complex sequencing data into clear, interpretable, and publishable results. If you have generated NGS data but lack the time or in-house expertise for a robust analysis, I can provide the support you need.

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Evolutionary Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ DNA Sequencing
• ☆ RNA Sequencing
• ☆ Data Analysis
• ☆ Machine Learning
• ☆ Statistics
• ☆ Health Data Analysis
• ☆ Bioinformatics
• ☆ Python
• ☆ R
• ☆ Infectious Disease
• ☆ Antibiotic Resistance Research

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Meta-Research, Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Data Cleaning, Data Processing, Data Insights

Work Experience

Senior Research Fellow

CSIR - Indian Institute of Chemical Biology

March 2013 - 2019

Education

PhD (Infectious disease and immunology)

Indian Institute of Chemical Biology

January 2019 - August 2025

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Abhishake Lahiri, Rachana Banerjee, Stephy Mol Robinson, Prateek Verma, Ayushman Kumar Banerjee, Sohom Basak, Kausik Basak, Sandip Paul (2024). Exploring the resistome and virulome in major sequence types of Acinetobacter baumannii genomes: Correlations with genome divergence and sequence types . Infection, Genetics and Evolution.

Abhishake Lahiri, Rohit Roy Chowdhury, Jesmita Dhar, Stephy Mol Robinson, Kausik Basak, Sandip Paul, Rachana Banerjee (2023). MACI: A machine learning-based approach to identify drug classes of antibiotic resistance genes from metagenomic data . Computers in Biology and Medicine.

Abhishake Lahiri, Anupam Gautam, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Daniel H Huson, Sandip Paul (2023). Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification . Briefings in Bioinformatics.

Abhishake Lahiri, Ankita Sarkar, Priya Mitra, Tanusree Das, Jit Sarkar, Sandip Paul, Partha Chakrabarti (2023). Butyrate limits inflammatory macrophage niche in NASH . Cell Death & Disease.

Abhishake Lahiri, Daizee Talukdar, Purbita Bandopadhyay, Yogiraj Ray, Shekhar Ranjan Paul, Jafar Sarif, Ranit D’Rozario, Santanu Das, Debaleena Bhowmick, Shilpak Chatterjee, et al. (2023). Association of gut microbial dysbiosis with disease severity, response to therapy and disease outcomes in Indian patients with COVID-19 . Gut Pathogens.

Abhishake Lahiri, Yogiraj Ray, Shekhar Ranjan Paul, Purbita Bandopadhyay, Ranit D’Rozario, Jafar Sarif, Deblina Raychaudhuri, Debaleena Bhowmik, Janani Srinivasa Vasudevan, Ranjeet Maurya, et al.(2022). A phase 2 single center open label randomised control trial for convalescent plasma therapy in patients with severe COVID-19 . Nature Communications. 13. (1). Springer Science and Business Media {LLC}

Abhishake Lahiri, Dheerendra Pratap Mall, Subham Basu, Koushik Ghosh, Nidhi Kumari, Sandip Paul, Debabrata Biswas(2022). Human FKBP5 Negatively Regulates Transcription through Inhibition of P-TEFb Complex Formation . Molecular and Cellular Biology. 42. (1). p. 1--24. Informa {UK} Limited

Abhishake Lahiri, Debajyoti Das, Avishek Paul, Moumita Adak, Sujay K. Maity, Ankita Sarkar, Sandip Paul, Partha Chakrabarti(2021). Proteasome dysfunction under compromised redox metabolism dictates liver injury in NASH through ASK1/PPARγ binodal complementary modules . Redox Biology. 45. p. 102043. Elsevier {BV}

Abhishake Lahiri, Purbita Bandopadhyay, Ranit D’Rozario, Jafar Sarif, Yogiraj Ray, Shekhar Ranjan Paul, Rammohan Roy, Rajshekhar Maiti, Kausik Chaudhuri, Saugata Bagchi, et al.(2021). Nature and Dimensions of Systemic Hyperinflammation and its Attenuation by Convalescent Plasma in Severe COVID-19 . The Journal of Infectious Diseases. 224. (4). p. 565--574. Oxford University Press ({OUP})

Abhishake Lahiri, Rachana Banerjee, Narendrakumar M. Chaudhari, Anupam Gautam, Debaleena Bhowmik, Chitra Dutta, Sujay Chattopadhyay, Daniel H. Huson, Sandip Paul(2021). Interplay of Various Evolutionary Modes in Genome Diversification and Adaptive Evolution of the Family Sulfolobaceae . Frontiers in Microbiology. 12. Frontiers Media {SA}

Abhishake Lahiri, Changhon Lee, Ravi Verma, Seohyun Byun, Eun-Ji Jeun, Gi-Cheon Kim, Suyoung Lee, Hye-Ji Kang, Chan Johng Kim, Garima Sharma, et al.(2021). Structural specificities of cell surface β-glucan polysaccharides determine commensal yeast mediated immuno-modulatory activities . Nature Communications. 12. (1). Springer Science and Business Media {LLC}

Abhishake Lahiri, Changhon Lee, Ravi Verma, Seohyun Byun, Eun-Ji Jeun, Gi-Cheon Kim, Suyoung Lee, Hye-Ji Kang, Chan Johng Kim, Garima Sharma, et al.(2021). Structural specificities of cell surface β-glucan polysaccharides determine commensal yeast mediated immuno-modulatory activities . Nature Communications. 12. (1). Springer Science and Business Media {LLC}

BOOK CHAPTER

Abhishake Lahiri, Krishna Kumar, Debaleena Bhowmik, Sapan Mandloi, Anupam Gautam, Nupur Biswas, Sandip Paul, Saikat Chakrabarti (2023). Integrating Multi-Omics Data to Construct Reliable Interconnected Models of Signaling, Gene Regulatory, and Metabolic Pathways . Methods in Molecular Biology.

PREPRINT

Abhishake Lahiri, Yogiraj Ray, Shekhar Ranjan Paul, Purbita Bandopadhyay, Ranit D’Rozario, Jafar Sarif, Debaleena Bhowmik, Janani Srinivasa Vasudevan, Ranjeet Maurya, Akshay Kanakan, et al.(2020). Clinical and immunological benefits of convalescent plasma therapy in severe COVID-19: insights from a single center open label randomised control trial . Cold Spring Harbor Laboratory

Abhishake Lahiri, Purbita Bandopadhyay, Ranit D’Rozario, Jafar Sarif, Yogiraj Ray, Shekhar Ranjan Paul, Rammohan Roy, Rajshekhar Maiti, Kausik Chaudhuri, Saugata Bagchi, et al.(2020). Nature and dimensions of the cytokine storm and its attenuation by convalescent plasma in severe COVID-19 . Cold Spring Harbor Laboratory

Abhishake Lahiri, Debaleena Bhowmik, Sourav Pal, Arindam Talukdar, Sandip Paul(2020). Emergence of multiple variants of SARS-CoV-2 with signature structural changes . Cold Spring Harbor Laboratory