Profile Details

Create Project

★★★★★

☆☆☆☆☆

USD 100 /hr

★★★★★

☆☆☆☆☆

Hire Dr. Austin N.

United States

USD 100 /hr

PhD Bioinformatics Consultant | Expert in Advanced Data Analysis, Multiomics, and Clinical Trial Insights

Profile Summary

PhD at Oregon Health and Science University in Computational Biology. I am a research scientist working on analyses for mIHC, CyToF, RNA-seq, and DSP. Previously, I developed bioinformatics software in order to investigate the relationship between HLA and infectious disease and to discover novel targets for immunotherapy from patient sequencing data and large datasets such as GTEx and TCGA. Languages: Python. R, C++.

Subject Matter Expertise

• ☆ Computational Biology
• ☆ Virology
• ☆ Molecular Biology
• ☆ Omics
• ☆ Data Analysis
• ☆ Statistics
• ☆ Health Data Analysis
• ☆ Bioinformatics
• ☆ R
• ☆ Clinical Trials

Services

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Work Experience

Computational Biologist

Knight Diagnostic Laboratories- Immune Monitoring & Cancer Omics

January 2022 - Present

Education

PhD Bioengineering

Oregon Health & Science University

September 2018 - October 2022

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Nguyen A, Nellore A and Thompson RF. Discordant results among major histocompatibility complex binding affinity prediction tools [version 1; peer review: 2 approved with reservations] F1000Research 2023, 12:617 (https://doi.org/10.12688/f1000research.132538.1) .

Austin Nguyen, Abhinav Nellore, Reid F. Thompson (2023). Discordant results among major histocompatibility complex binding affinity prediction tools . F1000Research.

Austin Nguyen, Tasneem Yusufali, Jill A. Hollenbach, Abhinav Nellore, Reid F. Thompson (2022). Minimal observed impact of HLA genotype on hospitalization and severity of SARS‐CoV‐2 infection . HLA.

Austin Nguyen, Julianne K. David, Sean K. Maden, Mary A. Wood, Benjamin R. Weeder, Abhinav Nellore, Reid F. Thompson, Tom Gallagher(2020). Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2 . Journal of Virology. 94. (13). American Society for Microbiology

(2018). Population-level distribution and putative immunogenicity of cancer neoepitopes . BMC cancer.

PREPRINT

Austin Nguyen, Abhinav Nellore, Reid F. Thompson (2022). Discordant results among MHC binding affinity prediction tools .

Austin Nguyen, Tasneem Yusufali, Jill A. Hollenbach, Abhinav Nellore, Reid F. Thompson (2021). Minimal observed impact of HLA genotype on hospitalization and severity of SARS-CoV-2 infection .

Austin Nguyen, Massimo Bionaz (2019). Analysis of model organism viability through an interspecies pathway comparison pipeline using the dynamic impact approach .

(2019). A multidimensional analog to the Burrows-Wheeler transform.

OTHER

Austin Nguyen, Julianne K. David, Sean K. Maden, Mary A. Wood, Benjamin R. Weeder, Abhinav Nellore, Reid F. Thompson(2020). Human leukocyte antigen susceptibility map for SARS-CoV-2 . Cold Spring Harbor Laboratory

Mary A. Wood, Austin Nguyen, Adam Struck, Kyle Ellrott, Abhinav Nellore, Reid F. Thompson(2018). neoepiscope improves neoepitope prediction with multi-variant phasing . Cold Spring Harbor Laboratory