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Profile Details
Contact
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USD 110 /hr
Hire Dr. Suzanne Fei
United States
USD 110 /hr

Bioinformatics & Biostatistics Core Director

Profile Summary
Subject Matter Expertise
Services
Scientific writing White paper, Grant proposal, Journal article, Educational content
Data science & analysis Simple data analysis, Complex data analysis, Statistical analysis
Work Experience

Bioinformatics & Biostatistics Core Director

Oregon Health & Science University

August 2017 - Present

Bioinformatics & Biostatistics Core Senior Analyst

Oregon Health & Science University

February 2015 - August 2017

Cancer Genomics Postdoctoral Researcher

Oregon Health & Science University

June 2011 - February 2015

Education

Graduate Certificate Applied Statistics (Mathematics and Statistics)

Portland State University

June 2006 - June 2011

PhD (Biomedical Informatics)

Oregon Health & Science University

September 2004 - June 2011

HBS (Biochemistry/Biophysics)

Oregon State University

September 1999 - June 2004

Certifications
  • Certification details not provided.
Publications
JOURNAL ARTICLE
Daughtry, Brittany L and Rosenkrantz, Jimi L and Lazar, Nathan H and Fei, Suzanne S and Redmayne, Nash and Torkenczy, Kristof A and Adey, Andrew and Yan, Melissa and Gao, Lina and Park, Byung and Nevonen, Kimberly A and Carbone, Lucia and Chavez, Shawn L(2019). Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion . Genome research. p. gr.239830.118. Cold Spring Harbor Laboratory Press
Bayles, R. G. and Olivas, A. and Denfeld, Q. and Woodward, W. R. and Fei, S. S. and Gao, L. and Habecker, B. A.(2018). Transcriptomic and neurochemical analysis of the stellate ganglia in mice highlights sex differences . Scientific Reports. 8. (1). p. 8963.
Messaoudi, Ilhem and Handu, Mithila and Rais, Maham and Sureshchandra, Suhas and Park, Byung S. and Fei, Suzanne S. and Wright, Hollis and White, Ashley E. and Jain, Ruhee and Cameron, Judy L. and Winters-Stone, Kerri M. and Varlamov, Oleg(2017). Long-lasting effect of obesity on skeletal muscle transcriptome . BMC Genomics. 18. (1). p. 411.
Fei, Suzanne S and Mitchell, Asia D and Heskett, Michael B and Vocke, Cathy D and Ricketts, Christopher J and Peto, Myron and Wang, Nicholas J and S{\"{o}}nmez, Kemal and Linehan, W Marston and Spellman, Paul T(2016). Patient-specific factors influence somatic variation patterns in von Hippel-Lindau disease renal tumours . Nature communications. 7. p. 11588.
Linehan, W Marston and Spellman, Paul T and Ricketts, Christopher J and Creighton, Chad J and Fei, Suzanne S and Davis, Caleb and Wheeler, David A and Murray, Bradley A and Schmidt, Laura and Vocke, Cathy D and Peto, Myron and {Al Mamun}, Abu Amar M and Shinbrot, Eve and Sethi, Anurag and Brooks, Samira and Rathmell, W Kimryn and Brooks, Angela N and Hoadley, Katherine A and Robertson, A Gordon and Brooks, Denise and Bowlby, Reanne and Sadeghi, Sara and Shen, Hui and Weisenberger, Daniel J and Bootwalla, Moiz and Baylin, Stephen B and Laird, Peter W and Cherniack, Andrew D and Saksena, Gordon and Haake, Scott and Li, Jun and Liang, Han and Lu, Yiling and Mills, Gordon B and Akbani, Rehan and Leiserson, Mark D M and Raphael, Benjamin J and Anur, Pavana and Bottaro, Donald and Albiges, Laurence and Barnabas, Nandita and Choueiri, Toni K and Czerniak, Bogdan and Godwin, Andrew K and Hakimi, A Ari and Ho, Thai H and Hsieh, James and Ittmann, Michael and Kim, William Y and Krishnan, Bhavani and Merino, Maria J and Shaw, Kenna R Mills and Reuter, Victor E and Reznik, Ed and Shelley, Carl S and Shuch, Brian and Signoretti, Sabina and Srinivasan, Ramaprasad and Tamboli, Pheroze and Thomas, George and Tickoo, Satish and Burnett, Kenneth and Crain, Daniel and Gardner, Johanna and Lau, Kevin and Mallery, David and Morris, Scott and Paulauskis, Joseph D and Penny, Robert J and Shelton, Candace and Shelton, W Troy and Sherman, Mark and Thompson, Eric and Yena, Peggy and Avedon, Melissa T and Bowen, Jay and Gastier-Foster, Julie M and Gerken, Mark and Leraas, Kristen M and Lichtenberg, Tara M and Ramirez, Nilsa C and Santos, Tracie and Wise, Lisa and Zmuda, Erik and Demchok, John A and Felau, Ina and Hutter, Carolyn M and Sheth, Margi and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan and Ayala, Brenda and Baboud, Julien and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Ally, Adrian and Balasundaram, Miruna and Balu, Saianand and Beroukhim, Rameen and Bodenheimer, Tom and Buhay, Christian and Butterfield, Yaron S N and Carlsen, Rebecca and Carter, Scott L and Chao, Hsu and Chuah, Eric and Clarke, Amanda and Covington, Kyle R and Dahdouli, Mahmoud and Dewal, Ninad and Dhalla, Noreen and Doddapaneni, Harsha V and Drummond, Jennifer A and Gabriel, Stacey B and Gibbs, Richard A and Guin, Ranabir and Hale, Walker and Hawes, Alicia and Hayes, D Neil and Holt, Robert A and Hoyle, Alan P and Jefferys, Stuart R and Jones, Steven J M and Jones, Corbin D and Kalra, Divya and Kovar, Christie and Lewis, Lora and Li, Jie and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Meng, Shaowu and Meyerson, Matthew and Mieczkowski, Piotr A and Moore, Richard A and Morton, Donna and Mose, Lisle E and Mungall, Andrew J and Muzny, Donna and Parker, Joel S and Perou, Charles M and Roach, Jeffrey and Schein, Jacqueline E and Schumacher, Steven E and Shi, Yan and Simons, Janae V and Sipahimalani, Payal and Skelly, Tara and Soloway, Matthew G and Sougnez, Carrie and Tam, Angela and Tan, Donghui and Thiessen, Nina and Veluvolu, Umadevi and Wang, Min and Wilkerson, Matthew D and Wong, Tina and Wu, Junyuan and Xi, Liu and Zhou, Jane and Bedford, Jason and Chen, Fengju and Fu, Yao and Gerstein, Mark and Haussler, David and Kasaian, Katayoon and Lai, Phillip and Ling, Shiyun and Radenbaugh, Amie and {Van Den Berg}, David and Weinstein, John N and Zhu, Jingchun and Albert, Monique and Alexopoulou, Iakovina and Andersen, Jeremiah J and Auman, J Todd and Bartlett, John and Bastacky, Sheldon and Bergsten, Julie and Blute, Michael L and Boice, Lori and Bollag, Roni J and Boyd, Jeff and Castle, Erik and Chen, Ying-Bei and Cheville, John C and Curley, Erin and Davies, Benjamin and DeVolk, April and Dhir, Rajiv and Dike, Laura and Eckman, John and Engel, Jay and Harr, Jodi and Hrebinko, Ronald and Huang, Mei and Huelsenbeck-Dill, Lori and Iacocca, Mary and Jacobs, Bruce and Lobis, Michael and Maranchie, Jodi K and McMeekin, Scott and Myers, Jerome and Nelson, Joel and Parfitt, Jeremy and Parwani, Anil and Petrelli, Nicholas and Rabeno, Brenda and Roy, Somak and Salner, Andrew L and Slaton, Joel and Stanton, Melissa and Thompson, R Houston and Thorne, Leigh and Tucker, Kelinda and Weinberger, Paul M and Winemiller, Cynthia and Zach, Leigh Anne and Zuna, Rosemary(2015). Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma . The New England journal of medicine.
Hoadley, K.A. and Yau, C. and Wolf, D.M. and Cherniack, A.D. and Tamborero, D. and Ng, S. and Leiserson, M.D.M. and Niu, B. and McLellan, M.D. and Uzunangelov, V. and Zhang, J. and Kandoth, C. and Akbani, R. and Shen, H. and Omberg, L. and Chu, A. and Margolin, A.A. and {Van't Veer}, L.J. and Lopez-Bigas, N. and Laird, P.W. and Raphael, B.J. and Ding, L. and Robertson, A.G. and Byers, L.A. and Mills, G.B. and Weinstein, J.N. and {Van Waes}, C. and Chen, Z. and Collisson, E.A. and Benz, C.C. and Perou, C.M. and Stuart, J.M. and Abbott, R. and Abbott, S. and Aksoy, B.A. and Aldape, K. and Ally, A. and Amin, S. and Anastassiou, D. and Auman, J.T. and Baggerly, K.A. and Balasundaram, M. and Balu, S. and Baylin, S.B. and Benz, S.C. and Berman, B.P. and Bernard, B. and Bhatt, A.S. and Birol, I. and Black, A.D. and Bodenheimer, T. and Bootwalla, M.S. and Bowen, J. and Bressler, R. and Bristow, C.A. and Brooks, A.N. and Broom, B. and Buda, E. and Burton, R. and Butterfield, Y.S.N. and Carlin, D. and Carter, S.L. and Casasent, T.D. and Chang, K. and Chanock, S. and Chin, L. and Cho, D.-Y. and Cho, J. and Chuah, E. and Chun, H.-J.E. and Cibulskis, K. and Ciriello, G. and Cleland, J. and Cline, M. and Craft, B. and Creighton, C.J. and Danilova, L. and Davidsen, T. and Davis, C. and Dees, N.D. and Delehaunty, K. and Demchok, J.A. and Dhalla, N. and DiCara, D. and Dinh, H. and Dobson, J.R. and Dodda, D. and Doddapaneni, H. and Donehower, L. and Dooling, D.J. and Dresdner, G. and Drummond, J. and Eakin, A. and Edgerton, M. and Eldred, J.M. and Eley, G. and Ellrott, K. and Fan, C. and Fei, S. and Felau, I. and Frazer, S. and Freeman, S.S. and Frick, J. and Fronick, C.C. and Fulton, L.L. and Fulton, R. and Gabriel, S.B. and Gao, J. and Gastier-Foster, J.M. and Gehlenborg, N. and George, M. and Getz, G. and Gibbs, R. and Goldman, M. and Gonzalez-Perez, A. and Gross, B. and Guin, R. and Gunaratne, P. and Hadjipanayis, A. and Hamilton, M.P. and Hamilton, S.R. and Han, L. and Han, Y. and Harper, H.A. and Haseley, P. and Haussler, D. and Hayes, D.N. and Heiman, D.I. and Helman, E. and Helsel, C. and Herbrich, S.M. and Herman, J.G. and Hinoue, T. and Hirst, C. and Hirst, M. and Holt, R.A. and Hoyle, A.P. and Iype, L. and Jacobsen, A. and Jeffreys, S.R. and Jensen, M.A. and Jones, C.D. and Jones, S.J.M. and Ju, Z. and Jung, J. and Kahles, A. and Kahn, A. and Kalicki-Veizer, J. and Kalra, D. and Kanchi, K.-L. and Kane, D.W. and Kim, H. and Kim, J. and Knijnenburg, T. and Koboldt, D.C. and Kovar, C. and Kramer, R. and Kreisberg, R. and Kucherlapati, R. and Ladanyi, M. and Lander, E.S. and Larson, D.E. and Lawrence, M.S. and Lee, D. and Lee, E. and Lee, S. and Lee, W. and Lehmann, K.-V. and Leinonen, K. and Leraas, K.M. and Lerner, S. and Levine, D.A. and Lewis, L. and Ley, T.J. and Li, H.I. and Li, J. and Li, W. and Liang, H. and Lichtenberg, T.M. and Lin, J. and Lin, L. and Lin, P. and Liu, W. and Liu, Y. and Liu, Y. and Lorenzi, P.L. and Lu, C. and Lu, Y. and Luquette, L.J. and Ma, S. and Magrini, V.J. and Mahadeshwar, H.S. and Mardis, E.R. and Marra, M.A. and Mayo, M. and McAllister, C. and McGuire, S.E. and McMichael, J.F. and Melott, J. and Meng, S. and Meyerson, M. and Mieczkowski, P.A. and Miller, C.A. and Miller, M.L. and Miller, M. and Moore, R.A. and Morgan, M. and Morton, D. and Mose, L.E. and Mungall, A.J. and Muzny, D. and Nguyen, L. and Noble, M.S. and Noushmehr, H. and O'Laughlin, M. and Ojesina, A.I. and Yang, T.-H.O. and Ozenberger, B. and Pantazi, A. and Parfenov, M. and Park, P.J. and Parker, J.S. and Paull, E. and Pedamallu, C.S. and Pihl, T. and Pohl, C. and Pot, D. and Protopopov, A. and Przytycka, T. and Radenbaugh, A. and Ramirez, N.C. and Ramirez, R. and R{\"{a}}tsch, G. and Reid, J. and Ren, X. and Reva, B. and Reynolds, S.M. and Rhie, S.K. and Roach, J. and Rovira, H. and Ryan, M. and Saksena, G. and Salama, S. and Sander, C. and Santoso, N. and Schein, J.E. and Schmidt, H. and Schultz, N. and Schumacher, S.E. and Seidman, J. and Senbabaoglu, Y. and Seth, S. and Sharpe, S. and Shen, R. and Sheth, M. and Shi, Y. and Shmulevich, I. and Silva, G.O. and Simons, J.V. and Sinha, R. and Sipahimalani, P. and Smith, S.M. and Sofia, H.J. and Sokolov, A. and Soloway, M.G. and Song, X. and Sougnez, C. and Spellman, P. and Staudt, L. and Stewart, C. and Stojanov, P. and Su, X. and Sumer, S.O. and Sun, Y. and Swatloski, T. and Tabak, B. and Tam, A. and Tan, D. and Tang, J. and Tarnuzzer, R. and Taylor, B.S. and Thiessen, N. and Thorsson, V. and Triche, T. and {Van Den Berg}, D.J. and Vandin, F. and Varhol, R.J. and Vaske, C.J. and Veluvolu, U. and Verhaak, R. and Voet, D. and Walker, J. and Wallis, J.W. and Waltman, P. and Wan, Y. and Wang, M. and Wang, W. and Wang, Z. and Waring, S. and Weinhold, N. and Weisenberger, D.J. and Wendl, M.C. and Wheeler, D. and Wilkerson, M.D. and Wilson, R.K. and Wise, L. and Wong, A. and Wu, C.-J. and Wu, C.-C. and Wu, H.-T. and Wu, J. and Wylie, T. and Xi, L. and Xi, R. and Xia, Z. and Xu, A.W. and Yang, D. and Yang, L. and Yang, L. and Yang, Y. and Yao, J. and Yao, R. and Ye, K. and Yoshihara, K. and Yuan, Y. and Yung, A.K. and Zack, T. and Zeng, D. and Zenklusen, J.C. and Zhang, H. and Zhang, J. and Zhang, N. and Zhang, Q. and Zhang, W. and Zhao, W. and Zheng, S. and Zhu, J. and Zmuda, E. and Zou, L.(2014). Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin . Cell. 158. (4).
(2013). Comprehensive molecular characterization of clear cell renal cell carcinoma . Nature. 499. (7456). p. 43--49. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.
Weinstein, J.N. and Collisson, E.A. and Mills, G.B. and Shaw, K.R.M. and Ozenberger, B.A. and Ellrott, K. and Sander, C. and Stuart, J.M. and Chang, K. and Creighton, C.J. and Davis, C. and Donehower, L. and Drummond, J. and Wheeler, D. and Ally, A. and Balasundaram, M. and Birol, I. and Butterfield, Y.S.N. and Chu, A. and Chuah, E. and Chun, H.-J.E. and Dhalla, N. and Guin, R. and Hirst, M. and Hirst, C. and Holt, R.A. and Jones, S.J.M. and Lee, D. and Li, H.I. and Marra, M.A. and Mayo, M. and Moore, R.A. and Mungall, A.J. and Robertson, A.G. and Schein, J.E. and Sipahimalani, P. and Tam, A. and Thiessen, N. and Varhol, R.J. and Beroukhim, R. and Bhatt, A.S. and Brooks, A.N. and Cherniack, A.D. and Freeman, S.S. and Gabriel, S.B. and Helman, E. and Jung, J. and Meyerson, M. and Ojesina, A.I. and Pedamallu, C.S. and Saksena, G. and Schumacher, S.E. and Tabak, B. and Zack, T. and Lander, E.S. and Bristow, C.A. and Hadjipanayis, A. and Haseley, P. and Kucherlapati, R. and Lee, S. and Lee, E. and Luquette, L.J. and Mahadeshwar, H.S. and Pantazi, A. and Parfenov, M. and Park, P.J. and Protopopov, A. and Ren, X. and Santoso, N. and Seidman, J. and Seth, S. and Song, X. and Tang, J. and Xi, R. and Xu, A.W. and Yang, L. and Zeng, D. and Auman, J.T. and Balu, S. and Buda, E. and Fan, C. and Hoadley, K.A. and Jones, C.D. and Meng, S. and Mieczkowski, P.A. and Parker, J.S. and Perou, C.M. and Roach, J. and Shi, Y. and Silva, G.O. and Tan, D. and Veluvolu, U. and Waring, S. and Wilkerson, M.D. and Wu, J. and Zhao, W. and Bodenheimer, T. and Hayes, D.N. and Hoyle, A.P. and Jeffreys, S.R. and Mose, L.E. and Simons, J.V. and Soloway, M.G. and Baylin, S.B. and Berman, B.P. and Bootwalla, M.S. and Danilova, L. and Herman, J.G. and Hinoue, T. and Laird, P.W. and Rhie, S.K. and Shen, H. and Triche, T. and Weisenberger, D.J. and Carter, S.L. and Cibulskis, K. and Chin, L. and Zhang, J. and Sougnez, C. and Wang, M. and Getz, G. and Dinh, H. and Doddapaneni, H.V. and Gibbs, R. and Gunaratne, P. and Han, Y. and Kalra, D. and Kovar, C. and Lewis, L. and Morgan, M. and Morton, D. and Muzny, D. and Reid, J. and Xi, L. and Cho, J. and Dicara, D. and Frazer, S. and Gehlenborg, N. and Heiman, D.I. and Kim, J. and Lawrence, M.S. and Lin, P. and Liu, Y. and Noble, M.S. and Stojanov, P. and Voet, D. and Zhang, H. and Zou, L. and Stewart, C. and Bernard, B. and Bressler, R. and Eakin, A. and Iype, L. and Knijnenburg, T. and Kramer, R. and Kreisberg, R. and Leinonen, K. and Lin, J. and Liu, Y. and Miller, M. and Reynolds, S.M. and Rovira, H. and Shmulevich, I. and Thorsson, V. and Yang, D. and Zhang, W. and Amin, S. and Wu, C.-J. and Wu, C.-C. and Akbani, R. and Aldape, K. and Baggerly, K.A. and Broom, B. and Casasent, T.D. and Cleland, J. and Dodda, D. and Edgerton, M. and Han, L. and Herbrich, S.M. and Ju, Z. and Kim, H. and Lerner, S. and Li, J. and Liang, H. and Liu, W. and Lorenzi, P.L. and Lu, Y. and Melott, J. and Nguyen, L. and Su, X. and Verhaak, R. and Wang, W. and Wong, A. and Yang, Y. and Yao, J. and Yao, R. and Yoshihara, K. and Yuan, Y. and Yung, A.K. and Zhang, N. and Zheng, S. and Ryan, M. and Kane, D.W. and Aksoy, B.A. and Ciriello, G. and Dresdner, G. and Gao, J. and Gross, B. and Jacobsen, A. and Kahles, A. and Ladanyi, M. and Lee, W. and Lehmann, K.-V. and Miller, M.L. and Ramirez, R. and R{\"{a}}tsch, G. and Reva, B. and Schultz, N. and Senbabaoglu, Y. and Shen, R. and Sinha, R. and Sumer, S.O. and Sun, Y. and Taylor, B.S. and Weinhold, N. and Fei, S. and Spellman, P. and Benz, C. and Carlin, D. and Cline, M. and Craft, B. and Goldman, M. and Haussler, D. and Ma, S. and Ng, S. and Paull, E. and Radenbaugh, A. and Salama, S. and Sokolov, A. and Swatloski, T. and Uzunangelov, V. and Waltman, P. and Yau, C. and Zhu, J. and Hamilton, S.R. and Abbott, S. and Abbott, R. and Dees, N.D. and Delehaunty, K. and Ding, L. and Dooling, D.J. and Eldred, J.M. and Fronick, C.C. and Fulton, R. and Fulton, L.L. and Kalicki-Veizer, J. and Kanchi, K.-L. and Kandoth, C. and Koboldt, D.C. and Larson, D.E. and Ley, T.J. and Lin, L. and Lu, C. and Magrini, V.J. and Mardis, E.R. and McLellan, M.D. and McMichael, J.F. and Miller, C.A. and O'Laughlin, M. and Pohl, C. and Schmidt, H. and Smith, S.M. and Walker, J. and Wallis, J.W. and Wendl, M.C. and Wilson, R.K. and Wylie, T. and Zhang, Q. and Burton, R. and Jensen, M.A. and Kahn, A. and Pihl, T. and Pot, D. and Wan, Y. and Levine, D.A. and Black, A.D. and Bowen, J. and Frick, J. and Gastier-Foster, J.M. and Harper, H.A. and Helsel, C. and Leraas, K.M. and Lichtenberg, T.M. and McAllister, C. and Ramirez, N.C. and Sharpe, S. and Wise, L. and Zmuda, E. and Chanock, S.J. and Davidsen, T. and Demchok, J.A. and Eley, G. and Felau, I. and Sheth, M. and Sofia, H. and Staudt, L. and Tarnuzzer, R. and Wang, Z. and Yang, L. and Zhang, J. and Omberg, L. and Margolin, A. and Raphael, B.J. and Vandin, F. and Wu, H.-T. and Leiserson, M.D.M. and Benz, S.C. and Vaske, C.J. and Noushmehr, H. and Wolf, D. and Veer, L.V. and Anastassiou, D. and Yang, T.-H.O. and Lopez-Bigas, N. and Gonzalez-Perez, A. and Tamborero, D. and Xia, Z. and Li, W. and Cho, D.-Y. and Przytycka, T. and Hamilton, M. and McGuire, S. and Nelander, S. and Johansson, P. and J{\"{o}}rnsten, R. and Kling, T.(2013). The cancer genome atlas pan-cancer analysis project . Nature Genetics. 45. (10).
Fei, Suzanne S and Wilmarth, Phillip A and Hitzemann, Robert J and McWeeney, Shannon K and Belknap, John K and David, Larry L(2011). Protein database and quantitative analysis considerations when integrating genetics and proteomics to compare mouse strains . Journal of proteome research. 10. (7). p. 2905--12.
Kisby, G. E. and Standley, M. and Park, T. and Olivas, A. and Fei, S. and Jacob, T. and Reddy, A. and Lu, X. and Pattee, P. and Nagalla, S. R.(2006). Proteomic analysis of the genotoxicant methylazoxymethanol (MAM)-induced changes in the developing cerebellum . Journal of Proteome Research. 5. (10). p. 2656--2665.