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Sayoni Das - PhD in Structural Molecular and Computational Biology - Subject Matter Expert from Kolabtree




Dr. Sayoni Das

Sayoni Das - PhD in Structural Molecular and Computational Biology - Subject Matter Expert from Kolabtree
United Kingdom

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Summary

Subject Matter Expertise

  • Molecular Biology
  • Bioinformatics
  • Biotechnology
  • Genetics & Genomics
  • Proteins & Peptides
  • Biochemistry
  • Microbiology
  • Structural Biology
  • Molecular Evolution
  • Research & Development
  • Nanobiotechnology
  • Computer Programming

Services

  • Literature search
  • Scientific consulting
  • Data Science
  • Editing
  • Experiment design
  • Statistical review
  • Writing
  • Other

Work Experience

  • Post-doctoral Research Associate

    University College London

    July 2016 - Present

Education

  • PhD in Structural Molecular and Computational Biology

    University College London

    September 2012 - June 2016

  • M.S (Research) in Biochemical Engineering and Biotechnology

    IIT Delhi

    August 2010 - June 2012

  • B.Tech Biotecnology

    West Bengal University of Technology

    August 2006 - June 2010

Publications

    JOURNAL ARTICLE
  • {"ProfilePublicationId":12156,"Type":"journal-article","Citation":"@article{Das2016,title = {Gene3D: Expanding the utility of domain assignments},journal = {Nucleic Acids Research},year = {2016},volume = {44},number = {D1},pages = {D404-D409},author = {Lam, S.D. and Dawson, N.L. and Das, S. and Sillitoe, I. and Ashford, P. and Lee, D. and Lehtinen, S. and Orengo, C.A. and Lees, J.G.}}","JournalTitle":"Nucleic Acids Research","Title":"Gene3D: Expanding the utility of domain assignments","CitationType":"bibtex","DOI":"10.1093/nar/gkv1231","Date":"2016-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84976904331\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50221,"ProfilePublicationId":12156,"ContributorName":"Lees, J.G.","CountributorRole":""},{"PublicationContributorId":50220,"ProfilePublicationId":12156,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50219,"ProfilePublicationId":12156,"ContributorName":"Lehtinen, S.","CountributorRole":""},{"PublicationContributorId":50218,"ProfilePublicationId":12156,"ContributorName":"Lee, D.","CountributorRole":""},{"PublicationContributorId":50217,"ProfilePublicationId":12156,"ContributorName":"Ashford, P.","CountributorRole":""},{"PublicationContributorId":50216,"ProfilePublicationId":12156,"ContributorName":"Sillitoe, I.","CountributorRole":""},{"PublicationContributorId":50215,"ProfilePublicationId":12156,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50214,"ProfilePublicationId":12156,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50213,"ProfilePublicationId":12156,"ContributorName":"Lam, S.D.","CountributorRole":""}]}
  • {"ProfilePublicationId":12157,"Type":"journal-article","Citation":"@article{Das2016,title = {Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases},journal = {PLoS Computational Biology},year = {2016},volume = {12},number = {6},author = {Lee, D. and Das, S. and Dawson, N.L. and Dobrijevic, D. and Ward, J. and Orengo, C.}}","JournalTitle":"PLoS Computational Biology","Title":"Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases","CitationType":"bibtex","DOI":"10.1371/journal.pcbi.1004926","Date":"2016-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84978909761\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50227,"ProfilePublicationId":12157,"ContributorName":"Orengo, C.","CountributorRole":""},{"PublicationContributorId":50226,"ProfilePublicationId":12157,"ContributorName":"Ward, J.","CountributorRole":""},{"PublicationContributorId":50225,"ProfilePublicationId":12157,"ContributorName":"Dobrijevic, D.","CountributorRole":""},{"PublicationContributorId":50224,"ProfilePublicationId":12157,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50223,"ProfilePublicationId":12157,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50222,"ProfilePublicationId":12157,"ContributorName":"Lee, D.","CountributorRole":""}]}
  • {"ProfilePublicationId":12158,"Type":"journal-article","Citation":"@article{Das2016,title = {Protein function annotation using protein domain family resources},journal = {Methods},year = {2016},volume = {93},pages = {24-34},author = {Das, S. and Orengo, C.A.}}","JournalTitle":"Methods","Title":"Protein function annotation using protein domain family resources","CitationType":"bibtex","DOI":"10.1016/j.ymeth.2015.09.029","Date":"2016-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84953241659\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50229,"ProfilePublicationId":12158,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50228,"ProfilePublicationId":12158,"ContributorName":"Das, S.","CountributorRole":""}]}
  • {"ProfilePublicationId":12159,"Type":"journal-article","Citation":"@article{Das2015,title = {CATH FunFHMMer web server: protein functional annotations using functional family assignments},journal = {Nucleic acids research},year = {2015},volume = {43},number = {W1},pages = {W148-W153},author = {Das, S. and Sillitoe, I. and Lee, D. and Lees, J.G. and Dawson, N.L. and Ward, J. and Orengo, C.A.}}","JournalTitle":"Nucleic acids research","Title":"CATH FunFHMMer web server: protein functional annotations using functional family assignments","CitationType":"bibtex","DOI":"10.1093/nar/gkv488","Date":"2015-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84979865064\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50236,"ProfilePublicationId":12159,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50235,"ProfilePublicationId":12159,"ContributorName":"Ward, J.","CountributorRole":""},{"PublicationContributorId":50234,"ProfilePublicationId":12159,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50233,"ProfilePublicationId":12159,"ContributorName":"Lees, J.G.","CountributorRole":""},{"PublicationContributorId":50232,"ProfilePublicationId":12159,"ContributorName":"Lee, D.","CountributorRole":""},{"PublicationContributorId":50231,"ProfilePublicationId":12159,"ContributorName":"Sillitoe, I.","CountributorRole":""},{"PublicationContributorId":50230,"ProfilePublicationId":12159,"ContributorName":"Das, S.","CountributorRole":""}]}
  • {"ProfilePublicationId":12160,"Type":"journal-article","Citation":"@article{Das2015,title = {CATH: Comprehensive structural and functional annotations for genome sequences},journal = {Nucleic Acids Research},year = {2015},volume = {43},number = {D1},pages = {D376-D381},author = {Sillitoe, I. and Lewis, T.E. and Cuff, A. and Das, S. and Ashford, P. and Dawson, N.L. and Furnham, N. and Laskowski, R.A. and Lee, D. and Lees, J.G. and Lehtinen, S. and Studer, R.A. and Thornton, J. and Orengo, C.A.}}","JournalTitle":"Nucleic Acids Research","Title":"CATH: Comprehensive structural and functional annotations for genome sequences","CitationType":"bibtex","DOI":"10.1093/nar/gku947","Date":"2015-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84941039390\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50250,"ProfilePublicationId":12160,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50249,"ProfilePublicationId":12160,"ContributorName":"Thornton, J.","CountributorRole":""},{"PublicationContributorId":50248,"ProfilePublicationId":12160,"ContributorName":"Studer, R.A.","CountributorRole":""},{"PublicationContributorId":50247,"ProfilePublicationId":12160,"ContributorName":"Lehtinen, S.","CountributorRole":""},{"PublicationContributorId":50246,"ProfilePublicationId":12160,"ContributorName":"Lees, J.G.","CountributorRole":""},{"PublicationContributorId":50245,"ProfilePublicationId":12160,"ContributorName":"Lee, D.","CountributorRole":""},{"PublicationContributorId":50244,"ProfilePublicationId":12160,"ContributorName":"Laskowski, R.A.","CountributorRole":""},{"PublicationContributorId":50243,"ProfilePublicationId":12160,"ContributorName":"Furnham, N.","CountributorRole":""},{"PublicationContributorId":50242,"ProfilePublicationId":12160,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50241,"ProfilePublicationId":12160,"ContributorName":"Ashford, P.","CountributorRole":""},{"PublicationContributorId":50240,"ProfilePublicationId":12160,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50239,"ProfilePublicationId":12160,"ContributorName":"Cuff, A.","CountributorRole":""},{"PublicationContributorId":50238,"ProfilePublicationId":12160,"ContributorName":"Lewis, T.E.","CountributorRole":""},{"PublicationContributorId":50237,"ProfilePublicationId":12160,"ContributorName":"Sillitoe, I.","CountributorRole":""}]}
  • {"ProfilePublicationId":12161,"Type":"journal-article","Citation":"@article{Das2015,title = {Diversity in protein domain superfamilies},journal = {Current Opinion in Genetics and Development},year = {2015},volume = {35},pages = {40-49},author = {Das, S. and Dawson, N.L. and Orengo, C.A.}}","JournalTitle":"Current Opinion in Genetics and Development","Title":"Diversity in protein domain superfamilies","CitationType":"bibtex","DOI":"10.1016/j.gde.2015.09.005","Date":"2015-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84943513626\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50253,"ProfilePublicationId":12161,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50252,"ProfilePublicationId":12161,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50251,"ProfilePublicationId":12161,"ContributorName":"Das, S.","CountributorRole":""}]}
  • {"ProfilePublicationId":12162,"Type":"journal-article","Citation":"@article{Das2015,title = {Highlights of the 1st Student Symposium of the ISCB RSG UK},journal = {F1000Research},year = {2015},volume = {4},author = {Hassan, M. and Rahman, F. and Farmer, R. and Das, S. and Vayani, F.}}","JournalTitle":"F1000Research","Title":"Highlights of the 1st Student Symposium of the ISCB RSG UK","CitationType":"bibtex","DOI":"10.12688/f1000research.6616.1","Date":"2015-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84964637857\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50258,"ProfilePublicationId":12162,"ContributorName":"Vayani, F.","CountributorRole":""},{"PublicationContributorId":50257,"ProfilePublicationId":12162,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50256,"ProfilePublicationId":12162,"ContributorName":"Farmer, R.","CountributorRole":""},{"PublicationContributorId":50255,"ProfilePublicationId":12162,"ContributorName":"Rahman, F.","CountributorRole":""},{"PublicationContributorId":50254,"ProfilePublicationId":12162,"ContributorName":"Hassan, M.","CountributorRole":""}]}
  • {"ProfilePublicationId":12163,"Type":"journal-article","Citation":"@article{Das2014,title = {Functional classification of CATH superfamilies: A domain-based approach for protein function annotation},journal = {Bioinformatics},year = {2014},volume = {31},number = {21},pages = {3460-3467},author = {Das, S. and Lee, D. and Sillitoe, I. and Dawson, N.L. and Lees, J.G. and Orengo, C.A.}}","JournalTitle":"Bioinformatics","Title":"Functional classification of CATH superfamilies: A domain-based approach for protein function annotation","CitationType":"bibtex","DOI":"10.1093/bioinformatics/btv398","Date":"2014-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84947605491\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50264,"ProfilePublicationId":12163,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50263,"ProfilePublicationId":12163,"ContributorName":"Lees, J.G.","CountributorRole":""},{"PublicationContributorId":50262,"ProfilePublicationId":12163,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50261,"ProfilePublicationId":12163,"ContributorName":"Sillitoe, I.","CountributorRole":""},{"PublicationContributorId":50260,"ProfilePublicationId":12163,"ContributorName":"Lee, D.","CountributorRole":""},{"PublicationContributorId":50259,"ProfilePublicationId":12163,"ContributorName":"Das, S.","CountributorRole":""}]}
  • {"ProfilePublicationId":12164,"Type":"journal-article","Citation":"@article{Das2014,title = {Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis},journal = {Nucleic Acids Research},year = {2014},volume = {42},number = {D1},author = {Lees, J.G. and Lee, D. and Studer, R.A. and Dawson, N.L. and Sillitoe, I. and Das, S. and Yeats, C. and Dessailly, B.H. and Rentzsch, R. and Orengo, C.A.}}","JournalTitle":"Nucleic Acids Research","Title":"Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis","CitationType":"bibtex","DOI":"10.1093/nar/gkt1205","Date":"2014-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84891757330\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50274,"ProfilePublicationId":12164,"ContributorName":"Orengo, C.A.","CountributorRole":""},{"PublicationContributorId":50273,"ProfilePublicationId":12164,"ContributorName":"Rentzsch, R.","CountributorRole":""},{"PublicationContributorId":50272,"ProfilePublicationId":12164,"ContributorName":"Dessailly, B.H.","CountributorRole":""},{"PublicationContributorId":50271,"ProfilePublicationId":12164,"ContributorName":"Yeats, C.","CountributorRole":""},{"PublicationContributorId":50270,"ProfilePublicationId":12164,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50269,"ProfilePublicationId":12164,"ContributorName":"Sillitoe, I.","CountributorRole":""},{"PublicationContributorId":50268,"ProfilePublicationId":12164,"ContributorName":"Dawson, N.L.","CountributorRole":""},{"PublicationContributorId":50267,"ProfilePublicationId":12164,"ContributorName":"Studer, R.A.","CountributorRole":""},{"PublicationContributorId":50266,"ProfilePublicationId":12164,"ContributorName":"Lee, D.","CountributorRole":""},{"PublicationContributorId":50265,"ProfilePublicationId":12164,"ContributorName":"Lees, J.G.","CountributorRole":""}]}
  • {"ProfilePublicationId":12165,"Type":"journal-article","Citation":"@article{Das2012,title = {The chemical formula of a magnetotactic bacterium},journal = {Biotechnology and Bioengineering},year = {2012},volume = {109},number = {5},pages = {1205-1216},author = {Naresh, M. and Das, S. and Mishra, P. and Mittal, A.}}","JournalTitle":"Biotechnology and Bioengineering","Title":"The chemical formula of a magnetotactic bacterium","CitationType":"bibtex","DOI":"10.1002/bit.24403","Date":"2012-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84858441418\u0026partnerID=MN8TOARS","PublicationContributors":[{"PublicationContributorId":50278,"ProfilePublicationId":12165,"ContributorName":"Mittal, A.","CountributorRole":""},{"PublicationContributorId":50277,"ProfilePublicationId":12165,"ContributorName":"Mishra, P.","CountributorRole":""},{"PublicationContributorId":50276,"ProfilePublicationId":12165,"ContributorName":"Das, S.","CountributorRole":""},{"PublicationContributorId":50275,"ProfilePublicationId":12165,"ContributorName":"Naresh, M.","CountributorRole":""}]}
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